Wall clock time and date at job start Mon Mar 30 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47662 * 2 1 4 4 N 1.46508 * 109.47304 * 120.00509 * 2 1 3 5 5 C 1.46851 * 124.33895 * 119.97156 * 4 2 1 6 6 C 1.54482 * 105.42355 * 197.01974 * 5 4 2 7 7 H 1.08996 * 110.97403 * 216.44395 * 6 5 4 8 8 N 1.46901 * 110.96835 * 92.71357 * 6 5 4 9 9 C 1.46905 * 110.99870 * 158.09130 * 8 6 5 10 10 H 1.09004 * 109.46962 * 34.99990 * 9 8 6 11 11 C 1.52999 * 109.47094 * 274.99984 * 9 8 6 12 12 C 1.50696 * 109.47161 * 155.00107 * 9 8 6 13 13 H 1.08005 * 119.99735 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00295 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99693 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00152 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47063 * 59.99743 * 16 14 12 18 18 H 1.48498 * 109.46900 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47092 * 299.99687 * 16 14 12 20 20 C 1.54634 * 101.79778 * 334.58021 * 6 5 4 21 21 C 1.34413 * 124.34385 * 299.96997 * 4 2 1 22 22 O 1.21282 * 124.94774 * 359.62840 * 21 4 2 23 23 H 1.09007 * 109.46545 * 299.99962 * 1 2 3 24 24 H 1.09003 * 109.47134 * 59.99119 * 1 2 3 25 25 H 1.08992 * 109.47365 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47013 * 240.00208 * 2 1 3 27 27 H 1.08999 * 109.47803 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47069 * 300.00673 * 3 2 1 29 29 H 1.09007 * 109.47110 * 60.00383 * 3 2 1 30 30 H 1.09002 * 110.26134 * 78.04674 * 5 4 2 31 31 H 1.08997 * 110.28769 * 316.00913 * 5 4 2 32 32 H 1.00901 * 111.00067 * 282.04305 * 8 6 5 33 33 H 1.08999 * 109.47123 * 179.97438 * 11 9 8 34 34 H 1.08997 * 109.47624 * 300.00377 * 11 9 8 35 35 H 1.09006 * 109.47163 * 60.00429 * 11 9 8 36 36 H 0.96996 * 119.99950 * 180.02562 * 15 14 12 37 37 H 1.08994 * 110.48410 * 143.49314 * 20 6 5 38 38 H 1.09004 * 110.48357 * 266.13684 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.8656 -1.8900 1.1723 6 6 2.7603 -2.4957 2.5895 7 1 3.7130 -2.9224 2.9032 8 7 1.6907 -3.5005 2.6536 9 6 1.9041 -4.4258 3.7745 10 1 2.3482 -3.8865 4.6113 11 6 2.8443 -5.5502 3.3357 12 6 0.5829 -5.0130 4.1997 13 1 -0.3245 -4.7277 3.6881 14 6 0.5325 -5.9144 5.2418 15 7 1.6374 -6.2614 5.8650 16 14 -1.1051 -6.6428 5.7683 17 1 -1.7092 -7.3781 4.6283 18 1 -0.8894 -7.5780 6.9014 19 1 -2.0184 -5.5517 6.1934 20 6 2.4040 -1.2534 3.4386 21 6 1.7485 -0.3081 2.4561 22 8 1.0765 0.6544 2.7610 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9563 0.8901 30 1 3.8984 -1.6182 0.9542 31 1 2.4967 -2.5987 0.4309 32 1 0.7846 -3.0608 2.7152 33 1 3.0030 -6.2365 4.1675 34 1 2.4003 -6.0894 2.4990 35 1 3.8000 -5.1255 3.0282 36 1 1.6020 -6.8958 6.5979 37 1 1.7076 -1.5213 4.2330 38 1 3.3058 -0.8050 3.8557 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389861910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:07 Heat of formation + Delta-G solvation = -59.272216 kcal Electronic energy + Delta-G solvation = -17949.808308 eV Core-core repulsion = 15212.016813 eV Total energy + Delta-G solvation = -2737.791494 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.58872 -38.21020 -37.05206 -35.59003 -33.65278 -30.91511 -29.10090 -28.09706 -27.93316 -27.09602 -23.38222 -22.63823 -21.47868 -19.79116 -18.56057 -17.67691 -17.25697 -16.75285 -16.34628 -15.51993 -15.31111 -15.21763 -14.77662 -14.51640 -14.34791 -13.85184 -13.64399 -13.38597 -13.21518 -12.95132 -12.84288 -12.69202 -12.59370 -12.35146 -12.22379 -12.18339 -12.16291 -12.00432 -11.74880 -10.89629 -10.62406 -10.53350 -9.64411 -9.09161 -8.12744 -6.25597 1.42676 1.42943 1.50658 1.58187 2.09638 2.41574 3.16278 3.40173 3.45712 3.78580 3.94409 4.07691 4.14947 4.31505 4.41750 4.63949 4.69552 4.73316 4.78183 4.87015 4.90720 4.91377 4.95335 5.03455 5.15418 5.25174 5.27901 5.32805 5.54381 5.68637 5.76279 5.90891 6.18901 6.26875 6.43844 6.74648 6.96612 7.21874 7.44433 8.92076 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034299 B = 0.005833 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.150894 B = 4799.343062 C = 5065.230338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 C -0.160 4.160 4 N -0.607 5.607 5 C 0.116 3.884 6 C 0.077 3.923 7 H 0.106 0.894 8 N -0.670 5.670 9 C 0.217 3.783 10 H -0.022 1.022 11 C -0.113 4.113 12 C -0.540 4.540 13 H 0.052 0.948 14 C 0.018 3.982 15 N -0.913 5.913 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.276 1.276 20 C -0.185 4.185 21 C 0.517 3.483 22 O -0.578 6.578 23 H 0.038 0.962 24 H 0.089 0.911 25 H 0.051 0.949 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.039 0.961 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.327 0.673 33 H 0.054 0.946 34 H 0.027 0.973 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.075 0.925 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 9.568 -12.148 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 C -0.218 4.218 4 N -0.340 5.340 5 C -0.006 4.006 6 C -0.034 4.034 7 H 0.124 0.876 8 N -0.299 5.299 9 C 0.109 3.891 10 H -0.004 1.004 11 C -0.172 4.172 12 C -0.578 4.578 13 H 0.070 0.930 14 C -0.181 4.181 15 N -0.552 5.552 16 Si 0.780 3.220 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.202 1.202 20 C -0.227 4.227 21 C 0.305 3.695 22 O -0.459 6.459 23 H 0.057 0.943 24 H 0.108 0.892 25 H 0.070 0.930 26 H 0.135 0.865 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.145 0.855 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.102 9.534 -12.405 16.174 hybrid contribution -1.187 0.020 1.611 2.001 sum 2.915 9.554 -10.794 14.707 Atomic orbital electron populations 1.22142 0.95471 1.01995 1.02587 1.21177 0.94077 0.93501 0.86856 1.22119 1.01498 0.95468 1.02670 1.48585 1.50537 1.29338 1.05573 1.22396 0.95533 0.85181 0.97510 1.22651 0.97317 0.89400 0.94067 0.87605 1.60718 1.04104 1.18166 1.46930 1.18911 0.94426 0.89749 0.86027 1.00435 1.21542 0.96510 0.99453 0.99648 1.21548 0.93916 1.26144 1.16202 0.92969 1.25610 0.99531 0.96763 0.96236 1.69988 1.28105 1.34103 1.23017 0.85670 0.80240 0.78229 0.77818 1.19696 1.20802 1.20199 1.23097 1.03018 0.97964 0.98611 1.20978 0.79210 0.84288 0.85001 1.90624 1.41824 1.30952 1.82478 0.94324 0.89217 0.92964 0.86475 0.91825 0.89364 0.94202 0.87940 0.88691 0.85531 0.92746 0.95360 0.94897 0.92845 0.90624 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 9.20 71.98 0.66 -3.16 16 2 C 0.15 3.07 3.47 44.99 0.16 3.23 16 3 C -0.16 -3.18 9.20 71.98 0.66 -2.52 16 4 N -0.61 -15.71 2.83 -793.82 -2.25 -17.96 16 5 C 0.12 2.65 7.04 86.82 0.61 3.26 16 6 C 0.08 2.33 3.20 45.98 0.15 2.48 16 7 H 0.11 3.09 7.24 -2.39 -0.02 3.07 16 8 N -0.67 -26.01 6.12 -467.88 -2.86 -28.87 16 9 C 0.22 10.41 2.49 44.17 0.11 10.52 16 10 H -0.02 -1.16 7.85 -2.38 -0.02 -1.17 16 11 C -0.11 -5.24 9.18 71.98 0.66 -4.58 16 12 C -0.54 -29.08 8.59 25.60 0.22 -28.86 16 13 H 0.05 2.81 7.62 -2.91 -0.02 2.79 16 14 C 0.02 1.00 5.30 84.66 0.45 1.45 16 15 N -0.91 -51.42 11.32 21.45 0.24 -51.17 16 16 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 20 C -0.18 -5.84 6.31 30.59 0.19 -5.65 16 21 C 0.52 17.04 7.41 87.90 0.65 17.69 16 22 O -0.58 -23.06 15.12 -3.04 -0.05 -23.11 16 23 H 0.04 1.15 6.80 -2.38 -0.02 1.13 16 24 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.12 1.79 8.07 -2.39 -0.02 1.77 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 1.06 6.77 -2.38 -0.02 1.04 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 2.12 8.09 -2.39 -0.02 2.10 16 32 H 0.33 13.50 7.97 -89.69 -0.71 12.79 16 33 H 0.05 2.82 6.07 -2.39 -0.01 2.81 16 34 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.03 1.29 7.49 -2.38 -0.02 1.28 16 36 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.08 2.84 8.08 -2.39 -0.02 2.82 16 38 H 0.12 3.21 8.14 -2.38 -0.02 3.19 16 Total: -1.00 -63.56 304.98 1.95 -61.61 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.32 Total: 20.23 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 4.52 Total: -6.14 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -4.87 Total: -98.00 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -63.56 1.95 -61.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389861910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.334 kcal (2) G-P(sol) polarization free energy of solvation -63.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds