Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47164 * 2 1 4 4 N 1.46501 * 109.47190 * 120.00433 * 2 1 3 5 5 C 1.46756 * 124.34809 * 120.04749 * 4 2 1 6 6 C 1.54483 * 105.47450 * 196.99431 * 5 4 2 7 7 H 1.09000 * 111.00111 * 92.71581 * 6 5 4 8 8 N 1.46900 * 110.97116 * 216.46574 * 6 5 4 9 9 C 1.46901 * 110.99879 * 198.83221 * 8 6 5 10 10 H 1.09002 * 109.47382 * 34.99750 * 9 8 6 11 11 C 1.53000 * 109.46851 * 274.99836 * 9 8 6 12 12 C 1.50700 * 109.46988 * 155.00128 * 9 8 6 13 13 H 1.07999 * 119.99754 * 95.30949 * 12 9 8 14 14 C 1.37868 * 119.99823 * 275.30326 * 12 9 8 15 15 N 1.31517 * 120.00019 * 355.46204 * 14 12 9 16 16 Si 1.86797 * 119.99932 * 175.18812 * 14 12 9 17 17 H 1.48496 * 109.47447 * 359.97438 * 16 14 12 18 18 H 1.48509 * 109.47544 * 120.00112 * 16 14 12 19 19 H 1.48507 * 109.47210 * 239.99865 * 16 14 12 20 20 C 1.54632 * 101.76154 * 334.58414 * 6 5 4 21 21 C 1.34413 * 124.34857 * 300.02308 * 4 2 1 22 22 O 1.21284 * 124.94293 * 359.57426 * 21 4 2 23 23 H 1.09000 * 109.47505 * 59.99584 * 1 2 3 24 24 H 1.08995 * 109.47516 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47000 * 299.99635 * 1 2 3 26 26 H 1.09007 * 109.46631 * 240.00251 * 2 1 3 27 27 H 1.09002 * 109.47079 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47196 * 300.00111 * 3 2 1 29 29 H 1.09000 * 109.46864 * 60.00282 * 3 2 1 30 30 H 1.09004 * 110.25169 * 77.99404 * 5 4 2 31 31 H 1.09003 * 110.25018 * 315.99444 * 5 4 2 32 32 H 1.00902 * 110.99648 * 74.87836 * 8 6 5 33 33 H 1.09003 * 109.47179 * 175.24946 * 11 9 8 34 34 H 1.09002 * 109.47664 * 295.24981 * 11 9 8 35 35 H 1.08999 * 109.47074 * 55.25283 * 11 9 8 36 36 H 0.96998 * 120.00020 * 4.86753 * 15 14 12 37 37 H 1.09003 * 110.48358 * 143.47542 * 20 6 5 38 38 H 1.08997 * 110.48547 * 265.98398 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8664 -1.8882 1.1725 6 6 2.7621 -2.4951 2.5893 7 1 1.9695 -3.2419 2.6370 8 7 4.0470 -3.0683 3.0117 9 6 3.8622 -4.0152 4.1195 10 1 2.9184 -4.5452 3.9910 11 6 3.8420 -3.2515 5.4451 12 6 4.9977 -5.0061 4.1279 13 1 5.8561 -4.8382 4.7614 14 6 4.9404 -6.1269 3.3271 15 7 3.8580 -6.3778 2.6236 16 14 6.4033 -7.2849 3.2353 17 1 7.4913 -6.7784 4.1099 18 1 5.9926 -8.6382 3.6886 19 1 6.8891 -7.3586 1.8339 20 6 2.4041 -1.2534 3.4386 21 6 1.7477 -0.3087 2.4561 22 8 1.0756 0.6537 2.7610 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.8989 -1.6152 0.9543 31 1 2.4981 -2.5968 0.4307 32 1 4.7019 -2.3426 3.2617 33 1 3.6210 -3.9421 6.2590 34 1 4.8152 -2.7906 5.6139 35 1 3.0752 -2.4777 5.4069 36 1 3.1278 -5.7393 2.6126 37 1 1.7077 -1.5223 4.2328 38 1 3.3050 -0.8055 3.8579 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389861914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = -42.678392 kcal Electronic energy + Delta-G solvation = -17952.108628 eV Core-core repulsion = 15215.036696 eV Total energy + Delta-G solvation = -2737.071932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.38028 -36.92207 -35.91471 -34.12854 -31.89218 -29.58349 -28.16119 -27.22812 -26.15829 -24.51086 -22.34507 -20.96377 -20.74855 -18.68170 -16.98754 -16.52352 -15.98581 -15.29674 -14.37918 -14.07044 -13.94910 -13.72749 -13.58003 -13.48142 -12.81888 -12.74355 -12.47934 -12.18730 -12.06117 -11.94727 -11.54321 -11.29875 -11.12231 -11.09378 -10.87515 -10.77079 -10.71148 -10.12886 -9.76534 -9.45080 -8.71369 -8.53349 -8.34710 -7.31224 -6.33699 -4.08118 2.80098 3.12677 3.45023 3.48589 3.61697 4.48182 4.55208 4.86570 4.92006 5.02832 5.08078 5.15482 5.34116 5.39037 5.55553 5.60974 5.73823 5.75150 5.81349 5.85990 5.87277 6.08330 6.16164 6.19289 6.21010 6.27464 6.43670 6.49327 6.78575 6.85462 7.04808 7.32454 7.95152 8.28236 8.39573 8.40114 8.55135 8.89893 9.69852 11.05154 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037292 B = 0.005721 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.641990 B = 4892.776301 C = 5291.632437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 C -0.166 4.166 4 N -0.616 5.616 5 C 0.109 3.891 6 C 0.081 3.919 7 H 0.090 0.910 8 N -0.660 5.660 9 C 0.190 3.810 10 H 0.042 0.958 11 C -0.168 4.168 12 C -0.584 4.584 13 H 0.047 0.953 14 C 0.034 3.966 15 N -0.903 5.903 16 Si 1.072 2.928 17 H -0.291 1.291 18 H -0.289 1.289 19 H -0.288 1.288 20 C -0.187 4.187 21 C 0.522 3.478 22 O -0.545 6.545 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.324 0.676 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.029 0.971 36 H 0.272 0.728 37 H 0.094 0.906 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.216 10.253 -4.575 11.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.048 3.952 3 C -0.224 4.224 4 N -0.350 5.350 5 C -0.014 4.014 6 C -0.032 4.032 7 H 0.109 0.891 8 N -0.290 5.290 9 C 0.085 3.915 10 H 0.060 0.940 11 C -0.227 4.227 12 C -0.623 4.623 13 H 0.065 0.935 14 C -0.173 4.173 15 N -0.538 5.538 16 Si 0.901 3.099 17 H -0.217 1.217 18 H -0.216 1.216 19 H -0.214 1.214 20 C -0.229 4.229 21 C 0.310 3.690 22 O -0.423 6.423 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.142 0.858 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.065 8.842 -5.622 10.917 hybrid contribution -0.609 2.083 1.306 2.533 sum -3.674 10.925 -4.316 12.308 Atomic orbital electron populations 1.22176 0.94974 1.02384 1.02954 1.20897 0.94304 0.93001 0.86962 1.22172 1.01255 0.96022 1.02977 1.48538 1.51059 1.29619 1.05797 1.22249 0.94618 0.85269 0.99262 1.22607 0.95798 0.93105 0.91685 0.89137 1.61481 1.05974 1.18426 1.43142 1.19446 0.98584 0.89847 0.83659 0.94014 1.22537 0.99269 0.99439 1.01440 1.21858 1.05705 1.07472 1.27249 0.93477 1.25739 1.01032 0.97828 0.92709 1.70701 1.05641 1.37568 1.39879 0.83515 0.74760 0.75423 0.76177 1.21672 1.21578 1.21399 1.23366 1.02570 0.97945 0.99035 1.20956 0.79384 0.84664 0.84027 1.90633 1.40461 1.29363 1.81849 0.91753 0.92434 0.91122 0.89551 0.92548 0.91761 0.91102 0.90674 0.90401 0.85759 0.93330 0.93970 0.95206 0.91649 0.88728 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.20 37.16 0.34 -1.63 16 2 C 0.15 1.84 3.47 -67.93 -0.24 1.61 16 3 C -0.17 -1.93 9.20 37.16 0.34 -1.59 16 4 N -0.62 -8.89 2.83 -164.84 -0.47 -9.36 16 5 C 0.11 1.62 7.04 -3.12 -0.02 1.60 16 6 C 0.08 1.36 3.42 -66.08 -0.23 1.13 16 7 H 0.09 1.65 7.56 -51.93 -0.39 1.26 16 8 N -0.66 -13.17 6.09 -99.24 -0.60 -13.78 16 9 C 0.19 4.34 2.29 -68.86 -0.16 4.18 16 10 H 0.04 1.04 6.04 -51.93 -0.31 0.73 16 11 C -0.17 -3.30 9.03 37.16 0.34 -2.97 16 12 C -0.58 -15.42 8.64 -34.44 -0.30 -15.72 16 13 H 0.05 1.26 7.81 -52.49 -0.41 0.85 16 14 C 0.03 0.92 5.45 -17.82 -0.10 0.82 16 15 N -0.90 -25.96 13.63 55.43 0.76 -25.20 16 16 Si 1.07 24.51 29.91 -169.99 -5.08 19.42 16 17 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 C -0.19 -2.93 4.86 -26.74 -0.13 -3.06 16 21 C 0.52 8.59 7.41 -10.86 -0.08 8.51 16 22 O -0.54 -10.32 15.12 5.55 0.08 -10.24 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.99 6.80 -51.93 -0.35 0.64 16 26 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.98 6.77 -51.93 -0.35 0.63 16 30 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.32 6.08 7.96 -39.29 -0.31 5.76 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.51 5.70 -51.93 -0.30 0.22 16 36 H 0.27 7.74 6.66 -40.82 -0.27 7.47 16 37 H 0.09 1.48 7.46 -51.93 -0.39 1.10 16 38 H 0.10 1.50 7.62 -51.93 -0.40 1.10 16 LS Contribution 302.44 15.07 4.56 4.56 Total: -1.00 -29.41 302.44 -7.06 -36.47 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.08 Total: 5.22 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.23 Total: -7.10 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.32 Total: -48.33 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.08 Total: 19.42 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.41 -7.06 -36.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389861914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.205 kcal (2) G-P(sol) polarization free energy of solvation -29.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds