Wall clock time and date at job start Mon Mar 30 2020 03:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47164 * 2 1 4 4 N 1.46501 * 109.47190 * 120.00433 * 2 1 3 5 5 C 1.46756 * 124.34809 * 120.04749 * 4 2 1 6 6 C 1.54483 * 105.47450 * 196.99431 * 5 4 2 7 7 H 1.09000 * 111.00111 * 92.71581 * 6 5 4 8 8 N 1.46900 * 110.97116 * 216.46574 * 6 5 4 9 9 C 1.46901 * 110.99879 * 198.83221 * 8 6 5 10 10 H 1.09002 * 109.47382 * 34.99750 * 9 8 6 11 11 C 1.53000 * 109.46851 * 274.99836 * 9 8 6 12 12 C 1.50700 * 109.46988 * 155.00128 * 9 8 6 13 13 H 1.07999 * 119.99754 * 95.30949 * 12 9 8 14 14 C 1.37868 * 119.99823 * 275.30326 * 12 9 8 15 15 N 1.31517 * 120.00019 * 355.46204 * 14 12 9 16 16 Si 1.86797 * 119.99932 * 175.18812 * 14 12 9 17 17 H 1.48496 * 109.47447 * 359.97438 * 16 14 12 18 18 H 1.48509 * 109.47544 * 120.00112 * 16 14 12 19 19 H 1.48507 * 109.47210 * 239.99865 * 16 14 12 20 20 C 1.54632 * 101.76154 * 334.58414 * 6 5 4 21 21 C 1.34413 * 124.34857 * 300.02308 * 4 2 1 22 22 O 1.21284 * 124.94293 * 359.57426 * 21 4 2 23 23 H 1.09000 * 109.47505 * 59.99584 * 1 2 3 24 24 H 1.08995 * 109.47516 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47000 * 299.99635 * 1 2 3 26 26 H 1.09007 * 109.46631 * 240.00251 * 2 1 3 27 27 H 1.09002 * 109.47079 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47196 * 300.00111 * 3 2 1 29 29 H 1.09000 * 109.46864 * 60.00282 * 3 2 1 30 30 H 1.09004 * 110.25169 * 77.99404 * 5 4 2 31 31 H 1.09003 * 110.25018 * 315.99444 * 5 4 2 32 32 H 1.00902 * 110.99648 * 74.87836 * 8 6 5 33 33 H 1.09003 * 109.47179 * 175.24946 * 11 9 8 34 34 H 1.09002 * 109.47664 * 295.24981 * 11 9 8 35 35 H 1.08999 * 109.47074 * 55.25283 * 11 9 8 36 36 H 0.96998 * 120.00020 * 4.86753 * 15 14 12 37 37 H 1.09003 * 110.48358 * 143.47542 * 20 6 5 38 38 H 1.08997 * 110.48547 * 265.98398 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8664 -1.8882 1.1725 6 6 2.7621 -2.4951 2.5893 7 1 1.9695 -3.2419 2.6370 8 7 4.0470 -3.0683 3.0117 9 6 3.8622 -4.0152 4.1195 10 1 2.9184 -4.5452 3.9910 11 6 3.8420 -3.2515 5.4451 12 6 4.9977 -5.0061 4.1279 13 1 5.8561 -4.8382 4.7614 14 6 4.9404 -6.1269 3.3271 15 7 3.8580 -6.3778 2.6236 16 14 6.4033 -7.2849 3.2353 17 1 7.4913 -6.7784 4.1099 18 1 5.9926 -8.6382 3.6886 19 1 6.8891 -7.3586 1.8339 20 6 2.4041 -1.2534 3.4386 21 6 1.7477 -0.3087 2.4561 22 8 1.0756 0.6537 2.7610 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.8989 -1.6152 0.9543 31 1 2.4981 -2.5968 0.4307 32 1 4.7019 -2.3426 3.2617 33 1 3.6210 -3.9421 6.2590 34 1 4.8152 -2.7906 5.6139 35 1 3.0752 -2.4777 5.4069 36 1 3.1278 -5.7393 2.6126 37 1 1.7077 -1.5223 4.2328 38 1 3.3050 -0.8055 3.8579 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389861914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:14 Heat of formation + Delta-G solvation = -61.880033 kcal Electronic energy + Delta-G solvation = -17952.941273 eV Core-core repulsion = 15215.036696 eV Total energy + Delta-G solvation = -2737.904578 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.65999 -38.45922 -37.20141 -35.59572 -33.65192 -31.06938 -29.54399 -28.15532 -27.53165 -26.49684 -23.44955 -22.66334 -22.25595 -19.90424 -18.87862 -17.71635 -17.34372 -16.64561 -15.89672 -15.61497 -15.40413 -15.27821 -14.75182 -14.61405 -14.43559 -14.18903 -13.89427 -13.67500 -13.18327 -13.01343 -12.95707 -12.72906 -12.51772 -12.46596 -12.28692 -12.15541 -12.13879 -11.89236 -11.58595 -10.78549 -10.62258 -10.37666 -9.73541 -8.93971 -8.44623 -6.20340 1.49925 1.60849 1.68355 1.84166 1.96972 2.64900 3.11371 3.39263 3.58374 3.78712 3.89663 4.01375 4.07864 4.17260 4.28584 4.51515 4.54013 4.57114 4.64718 4.68887 4.73080 4.77372 4.84500 4.86355 4.90685 4.98541 5.16244 5.19299 5.26684 5.35425 5.66224 6.05252 6.10273 6.30078 6.58168 6.83656 6.85848 7.12524 7.64535 8.93540 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037292 B = 0.005721 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.641990 B = 4892.776301 C = 5291.632437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 C -0.160 4.160 4 N -0.608 5.608 5 C 0.118 3.882 6 C 0.084 3.916 7 H 0.073 0.927 8 N -0.668 5.668 9 C 0.192 3.808 10 H 0.014 0.986 11 C -0.158 4.158 12 C -0.594 4.594 13 H 0.039 0.961 14 C -0.014 4.014 15 N -0.931 5.931 16 Si 1.114 2.886 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.178 4.178 21 C 0.518 3.482 22 O -0.572 6.572 23 H 0.091 0.909 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.111 0.889 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.333 0.667 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.262 0.738 37 H 0.094 0.906 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 11.006 -5.468 12.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 C -0.218 4.218 4 N -0.341 5.341 5 C -0.005 4.005 6 C -0.028 4.028 7 H 0.092 0.908 8 N -0.298 5.298 9 C 0.085 3.915 10 H 0.032 0.968 11 C -0.218 4.218 12 C -0.633 4.633 13 H 0.058 0.942 14 C -0.215 4.215 15 N -0.568 5.568 16 Si 0.939 3.061 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.220 4.220 21 C 0.306 3.694 22 O -0.452 6.452 23 H 0.110 0.890 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.129 0.871 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.152 0.848 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.390 9.611 -6.527 11.861 hybrid contribution -0.855 1.911 1.587 2.627 sum -3.245 11.522 -4.941 12.950 Atomic orbital electron populations 1.22133 0.94668 1.02170 1.02988 1.21235 0.94620 0.93517 0.86693 1.22116 1.01268 0.95410 1.02966 1.48611 1.50317 1.29164 1.06049 1.22117 0.95184 0.85406 0.97786 1.22452 0.93774 0.93133 0.93414 0.90833 1.61088 1.07708 1.18886 1.42132 1.19247 0.95961 0.90270 0.85972 0.96762 1.22401 1.00429 0.99550 0.99373 1.22204 1.06136 1.08456 1.26541 0.94225 1.26938 1.02412 0.99727 0.92415 1.70810 1.06348 1.37865 1.41792 0.82952 0.72594 0.74064 0.76524 1.20150 1.21164 1.21020 1.23254 1.02889 0.97037 0.98786 1.21003 0.79196 0.84380 0.84781 1.90626 1.41754 1.30543 1.82327 0.89019 0.92755 0.93745 0.87079 0.92410 0.89106 0.93733 0.89899 0.89699 0.84758 0.93964 0.93323 0.92917 0.92732 0.88792 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 9.20 71.98 0.66 -2.87 16 2 C 0.14 3.11 3.47 44.99 0.16 3.27 16 3 C -0.16 -3.35 9.20 71.98 0.66 -2.69 16 4 N -0.61 -16.58 2.83 -794.03 -2.25 -18.83 16 5 C 0.12 3.31 7.04 86.83 0.61 3.92 16 6 C 0.08 2.79 3.42 45.98 0.16 2.95 16 7 H 0.07 2.71 7.56 -2.39 -0.02 2.69 16 8 N -0.67 -26.16 6.09 -467.89 -2.85 -29.01 16 9 C 0.19 8.77 2.29 44.17 0.10 8.87 16 10 H 0.01 0.73 6.04 -2.39 -0.01 0.72 16 11 C -0.16 -6.08 9.03 71.98 0.65 -5.43 16 12 C -0.59 -31.35 8.64 25.60 0.22 -31.13 16 13 H 0.04 2.10 7.81 -2.91 -0.02 2.08 16 14 C -0.01 -0.77 5.45 84.65 0.46 -0.31 16 15 N -0.93 -54.11 13.63 21.44 0.29 -53.82 16 16 Si 1.11 48.98 29.91 68.60 2.05 51.03 16 17 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 20 C -0.18 -5.37 4.86 30.59 0.15 -5.22 16 21 C 0.52 16.59 7.41 87.90 0.65 17.24 16 22 O -0.57 -21.47 15.12 -3.04 -0.05 -21.52 16 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.04 1.21 6.80 -2.39 -0.02 1.20 16 26 H 0.11 1.96 8.07 -2.38 -0.02 1.94 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.18 6.77 -2.39 -0.02 1.17 16 30 H 0.08 2.25 8.07 -2.38 -0.02 2.23 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.33 12.01 7.96 -89.69 -0.71 11.30 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.75 5.70 -2.39 -0.01 1.74 16 36 H 0.26 15.26 6.66 -92.71 -0.62 14.64 16 37 H 0.09 2.86 7.46 -2.39 -0.02 2.84 16 38 H 0.11 3.09 7.62 -2.39 -0.02 3.07 16 Total: -1.00 -62.96 302.44 2.16 -60.80 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.48 Total: 22.74 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 4.48 Total: -11.39 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -4.81 Total: -101.66 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.05 Total: 51.03 kcal Total: -62.96 2.16 -60.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389861914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.079 kcal (2) G-P(sol) polarization free energy of solvation -62.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds