Wall clock time and date at job start Mon Mar 30 2020 03:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46950 * 2 1 4 4 C 1.46770 * 124.35278 * 270.19757 * 3 2 1 5 5 C 1.54478 * 105.41656 * 197.24527 * 4 3 2 6 6 H 1.09006 * 111.00155 * 92.50441 * 5 4 3 7 7 N 1.46891 * 110.97174 * 216.25862 * 5 4 3 8 8 C 1.46908 * 110.99984 * 198.83321 * 7 5 4 9 9 C 1.52999 * 109.47039 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.47108 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47560 * 179.97438 * 10 9 8 12 12 H 1.08007 * 119.99772 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00434 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99753 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99911 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47293 * 90.00044 * 15 13 11 17 17 H 1.48500 * 109.47218 * 209.99918 * 15 13 11 18 18 H 1.48502 * 109.47455 * 330.00045 * 15 13 11 19 19 C 1.54627 * 101.76190 * 334.37653 * 5 4 3 20 20 C 1.34417 * 124.35171 * 90.02265 * 3 2 1 21 21 O 1.21283 * 124.94355 * 359.61657 * 20 3 2 22 22 H 1.09000 * 109.47123 * 300.00011 * 1 2 3 23 23 H 1.08999 * 109.47272 * 60.00633 * 1 2 3 24 24 H 1.09004 * 109.46653 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47123 * 239.99989 * 2 1 3 26 26 H 1.09000 * 109.47097 * 119.99892 * 2 1 3 27 27 H 1.09004 * 110.45406 * 78.17088 * 4 3 2 28 28 H 1.09003 * 110.17218 * 316.17400 * 4 3 2 29 29 H 1.00903 * 110.99901 * 322.77911 * 7 5 4 30 30 H 1.09002 * 109.46479 * 299.99866 * 8 7 5 31 31 H 1.08998 * 109.47059 * 59.99450 * 8 7 5 32 32 H 1.09008 * 109.46902 * 299.99460 * 9 8 7 33 33 H 1.08996 * 109.47536 * 59.99251 * 9 8 7 34 34 H 1.09008 * 109.46775 * 299.99509 * 10 9 8 35 35 H 1.08996 * 109.47558 * 59.99235 * 10 9 8 36 36 H 0.97005 * 119.99913 * 179.97438 * 14 13 11 37 37 H 1.08998 * 110.48642 * 266.11574 * 19 5 4 38 38 H 1.09006 * 110.48810 * 143.47535 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2904 2.1635 -1.2117 5 6 3.1768 3.3413 -0.7497 6 1 4.2344 3.0964 -0.8480 7 7 2.8523 4.5663 -1.4925 8 6 3.9446 5.5441 -1.3981 9 6 3.5705 6.8039 -2.1816 10 6 4.7084 7.8220 -2.0839 11 6 4.3403 9.0625 -2.8562 12 1 3.3899 9.1190 -3.3662 13 6 5.2167 10.1255 -2.9117 14 7 6.3737 10.0569 -2.2903 15 14 4.7606 11.6629 -3.8697 16 1 4.0542 12.6132 -2.9734 17 1 5.9933 12.3021 -4.3960 18 1 3.8716 11.2957 -5.0011 19 6 2.7754 3.4733 0.7377 20 6 2.2715 2.0962 1.1097 21 8 2.1228 1.6940 2.2442 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.3606 2.5368 -1.6409 28 1 2.8236 1.5536 -1.9410 29 1 2.6355 4.3584 -2.4557 30 1 4.1110 5.8031 -0.3524 31 1 4.8549 5.1133 -1.8149 32 1 3.4039 6.5452 -3.2274 33 1 2.6603 7.2345 -1.7644 34 1 4.8755 8.0808 -1.0382 35 1 5.6184 7.3911 -2.5014 36 1 6.9904 10.8046 -2.3297 37 1 1.9840 4.2136 0.8550 38 1 3.6410 3.7395 1.3443 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000391462808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:57 Heat of formation + Delta-G solvation = -50.274859 kcal Electronic energy + Delta-G solvation = -16789.473236 eV Core-core repulsion = 14052.071896 eV Total energy + Delta-G solvation = -2737.401340 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57106 -37.21173 -35.84533 -34.02699 -32.67234 -30.86949 -28.94608 -27.63677 -25.68268 -23.58877 -22.59337 -21.18540 -20.19915 -19.44662 -16.88574 -16.78263 -16.28111 -15.69818 -15.28557 -14.55727 -14.25719 -14.16314 -13.91538 -13.71812 -13.50277 -13.28836 -12.56194 -12.32957 -12.24768 -11.84364 -11.63375 -11.52724 -11.29751 -11.15377 -10.84709 -10.60872 -10.52778 -9.92307 -9.72763 -9.37035 -9.08061 -8.95119 -8.40871 -8.35147 -6.00604 -4.02850 2.49783 2.77925 3.31940 3.38153 3.41284 4.01506 4.23989 4.37874 4.46682 4.75536 4.84917 4.91041 5.07284 5.11094 5.22025 5.35405 5.41433 5.44017 5.56112 5.65542 5.70607 5.77692 5.87657 5.94446 6.25043 6.34499 6.64643 6.68748 6.91804 7.09056 7.18127 7.44199 7.66786 7.80991 7.99477 8.05107 8.42363 9.04401 9.61355 11.10833 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.059549 B = 0.003404 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.086233 B = 8223.068269 C = 8432.492892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.103 3.897 5 C 0.073 3.927 6 H 0.066 0.934 7 N -0.678 5.678 8 C 0.058 3.942 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.147 4.147 20 C 0.521 3.479 21 O -0.537 6.537 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.343 0.657 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.117 0.883 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.321 -18.980 1.174 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.020 4.020 5 C -0.038 4.038 6 H 0.083 0.917 7 N -0.310 5.310 8 C -0.070 4.070 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.187 4.187 20 C 0.310 3.690 21 O -0.414 6.414 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.161 0.839 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.135 0.865 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.614 -18.900 2.316 20.899 hybrid contribution 0.502 0.522 -1.207 1.408 sum -8.112 -18.378 1.109 20.119 Atomic orbital electron populations 1.22164 0.95770 1.02249 1.02636 1.21335 0.94452 0.81245 1.03005 1.48331 1.66253 1.13655 1.07315 1.22232 1.00164 0.92355 0.87273 1.22386 0.97664 0.89755 0.93948 0.91654 1.60636 1.42883 1.09663 1.17837 1.22213 0.90482 0.92807 1.01508 1.21630 1.01147 0.93928 0.97816 1.19063 0.92619 0.92657 0.97242 1.21250 1.02819 1.00025 1.31714 0.92658 1.25031 0.95035 0.98705 0.95757 1.69963 1.08556 1.31710 1.43344 0.86594 0.77838 0.83305 0.80262 1.20644 1.21266 1.19881 1.22473 1.04109 0.95376 0.96775 1.21035 0.76280 0.87549 0.84184 1.90706 1.54092 1.75342 1.21224 0.92183 0.92307 0.91504 0.90442 0.90088 0.90056 0.90488 0.83863 0.91166 0.95350 0.93559 0.92442 0.96538 0.96798 0.93012 0.86485 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.24 37.16 0.38 -0.92 16 2 C 0.12 1.00 6.65 -4.04 -0.03 0.98 16 3 N -0.62 -6.37 2.93 -172.41 -0.51 -6.87 16 4 C 0.10 0.88 6.85 -3.12 -0.02 0.86 16 5 C 0.07 0.77 3.43 -66.09 -0.23 0.54 16 6 H 0.07 0.69 7.92 -51.93 -0.41 0.27 16 7 N -0.68 -8.34 6.29 -105.00 -0.66 -9.00 16 8 C 0.06 0.91 5.55 -3.82 -0.02 0.89 16 9 C -0.11 -2.09 5.41 -26.73 -0.14 -2.24 16 10 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 11 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 12 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 15 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 C -0.15 -1.73 6.54 -26.74 -0.17 -1.90 16 20 C 0.52 6.85 8.02 -10.86 -0.09 6.77 16 21 O -0.54 -9.01 17.59 5.55 0.10 -8.91 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 27 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.34 3.73 8.52 -39.29 -0.33 3.39 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.03 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.12 1.44 8.08 -51.93 -0.42 1.02 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 317.42 15.07 4.78 4.78 Total: -1.00 -32.13 317.42 -8.05 -40.18 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.61 Total: -2.56 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -0.87 Total: -8.02 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: -0.43 Total: -41.99 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.10 Total: -8.91 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.13 -8.05 -40.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391462808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.098 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds