Wall clock time and date at job start Mon Mar 30 2020 03:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47030 * 2 1 4 4 C 1.46768 * 124.35072 * 89.99750 * 3 2 1 5 5 C 1.54480 * 105.55098 * 163.02465 * 4 3 2 6 6 H 1.08997 * 110.96887 * 267.25550 * 5 4 3 7 7 N 1.46892 * 110.96950 * 143.49258 * 5 4 3 8 8 C 1.46901 * 111.00243 * 155.00111 * 7 5 4 9 9 C 1.52998 * 109.47503 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47042 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46978 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00071 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00120 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99847 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99816 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47004 * 60.00415 * 15 13 11 17 17 H 1.48500 * 109.46736 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47391 * 299.99636 * 15 13 11 19 19 C 1.54633 * 101.76342 * 25.37218 * 5 4 3 20 20 C 1.34570 * 124.43540 * 269.92356 * 3 2 1 21 21 O 1.21276 * 124.91592 * 0.40866 * 20 3 2 22 22 H 1.08999 * 109.47580 * 300.00240 * 1 2 3 23 23 H 1.09007 * 109.46847 * 60.00225 * 1 2 3 24 24 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47036 * 240.00094 * 2 1 3 26 26 H 1.08998 * 109.46748 * 119.99685 * 2 1 3 27 27 H 1.09002 * 110.24468 * 43.97969 * 4 3 2 28 28 H 1.09002 * 110.24463 * 282.06727 * 4 3 2 29 29 H 1.00900 * 111.00209 * 278.95433 * 7 5 4 30 30 H 1.09008 * 109.46876 * 300.00282 * 8 7 5 31 31 H 1.09001 * 109.47279 * 59.99335 * 8 7 5 32 32 H 1.08996 * 109.47020 * 299.99808 * 9 8 7 33 33 H 1.09000 * 109.46927 * 60.00011 * 9 8 7 34 34 H 1.08996 * 109.47098 * 299.99811 * 10 9 8 35 35 H 1.09000 * 109.47209 * 60.00235 * 10 9 8 36 36 H 0.96999 * 119.99677 * 179.97438 * 14 13 11 37 37 H 1.09002 * 110.48603 * 93.88148 * 19 5 4 38 38 H 1.08996 * 110.48483 * 216.52510 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1736 3.3454 0.7505 6 1 4.2325 3.1056 0.8474 7 7 2.8431 4.5675 1.4955 8 6 3.9848 5.4915 1.5244 9 6 3.6034 6.7492 2.3077 10 6 4.7928 7.7112 2.3383 11 6 4.4169 8.9503 3.1093 12 1 3.4284 9.0426 3.5346 13 6 5.3350 9.9661 3.2718 14 7 6.5388 9.8535 2.7544 15 14 4.8692 11.5017 4.2281 16 1 4.4994 11.1269 5.6166 17 1 6.0235 12.4354 4.2577 18 1 3.7145 12.1637 3.5697 19 6 2.7699 3.4774 -0.7364 20 6 2.2734 2.0981 -1.1099 21 8 2.1256 1.6968 -2.2447 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.8323 1.5531 1.9384 28 1 1.3635 2.5296 1.6437 29 1 2.0251 5.0156 1.1106 30 1 4.8329 5.0061 2.0076 31 1 4.2559 5.7661 0.5050 32 1 2.7553 7.2347 1.8249 33 1 3.3327 6.4742 3.3271 34 1 5.6406 7.2255 2.8213 35 1 5.0639 7.9863 1.3190 36 1 7.1845 10.5683 2.8684 37 1 1.9742 4.2135 -0.8517 38 1 3.6334 3.7493 -1.3434 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000391462809.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:00 Heat of formation + Delta-G solvation = -50.829579 kcal Electronic energy + Delta-G solvation = -16785.098513 eV Core-core repulsion = 14047.673119 eV Total energy + Delta-G solvation = -2737.425394 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.61100 -37.24271 -35.87854 -34.05358 -32.65199 -30.86961 -28.88416 -27.57241 -25.72338 -23.57034 -22.55693 -21.48227 -20.14723 -19.47139 -16.94161 -16.80077 -16.19573 -15.73978 -15.10720 -14.57685 -14.32978 -14.20277 -13.90377 -13.76271 -13.64188 -12.89290 -12.52423 -12.39773 -12.27137 -12.08151 -11.57011 -11.51341 -11.35255 -11.30961 -10.85287 -10.62603 -10.55140 -10.05692 -9.72948 -9.37036 -9.09513 -8.93065 -8.36121 -8.33886 -6.00685 -4.03018 2.43463 2.78005 3.33185 3.37575 3.40008 3.95969 4.32423 4.42357 4.48130 4.69625 4.83741 4.89851 4.96833 5.08879 5.32270 5.35197 5.38302 5.44516 5.54659 5.60595 5.69237 5.72585 5.84435 5.87405 6.24122 6.34935 6.64716 6.67143 6.90703 7.08440 7.17184 7.43578 7.66248 7.80648 7.99269 8.00830 8.42112 9.04006 9.61123 11.10711 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060017 B = 0.003386 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.418768 B = 8267.860396 C = 8463.618873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.621 5.621 4 C 0.110 3.890 5 C 0.079 3.921 6 H 0.099 0.901 7 N -0.677 5.677 8 C 0.058 3.942 9 C -0.108 4.108 10 C 0.022 3.978 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.187 4.187 20 C 0.521 3.479 21 O -0.538 6.538 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.343 0.657 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.261 0.739 37 H 0.105 0.895 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 -17.826 -3.511 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.013 4.013 5 C -0.033 4.033 6 H 0.117 0.883 7 N -0.308 5.308 8 C -0.070 4.070 9 C -0.146 4.146 10 C -0.015 4.015 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.229 4.229 20 C 0.309 3.691 21 O -0.415 6.415 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.162 0.838 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.032 0.968 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.907 -18.288 -3.491 20.639 hybrid contribution -0.200 1.249 -0.337 1.309 sum -9.106 -17.039 -3.828 19.696 Atomic orbital electron populations 1.22163 0.95799 1.02275 1.02562 1.21328 0.94406 0.81219 1.03041 1.48440 1.65853 1.13794 1.07537 1.22159 1.00301 0.92280 0.86598 1.22497 0.99908 0.91761 0.89103 0.88260 1.60493 1.08018 1.06601 1.55653 1.22209 0.92197 0.93472 0.99120 1.21636 1.00523 0.93475 0.98957 1.19056 0.92368 0.93053 0.97052 1.21217 0.98790 1.01985 1.33919 0.92707 1.25030 0.95014 0.98580 0.95870 1.69953 1.04842 1.33437 1.45354 0.86652 0.77869 0.82883 0.80564 1.20208 1.21316 1.20263 1.23188 1.03823 0.95935 0.99907 1.20902 0.76417 0.87530 0.84284 1.90704 1.53950 1.75537 1.21269 0.92247 0.92313 0.91481 0.90186 0.90287 0.90053 0.90277 0.83794 0.91151 0.95265 0.93558 0.92443 0.96548 0.96779 0.92949 0.87654 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.12 1.01 6.66 -4.04 -0.03 0.98 16 3 N -0.62 -6.30 2.94 -172.37 -0.51 -6.80 16 4 C 0.11 0.98 7.08 -3.12 -0.02 0.96 16 5 C 0.08 0.81 3.49 -66.08 -0.23 0.58 16 6 H 0.10 1.02 7.83 -51.93 -0.41 0.62 16 7 N -0.68 -8.27 6.36 -105.00 -0.67 -8.94 16 8 C 0.06 0.90 5.55 -3.82 -0.02 0.88 16 9 C -0.11 -2.10 5.41 -26.73 -0.14 -2.24 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 11 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 12 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 15 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.19 -2.00 6.55 -26.74 -0.18 -2.18 16 20 C 0.52 6.62 8.03 -10.79 -0.09 6.53 16 21 O -0.54 -8.85 17.60 5.56 0.10 -8.75 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.73 7.94 -51.93 -0.41 0.32 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.34 3.92 8.08 -39.29 -0.32 3.61 16 30 H 0.07 1.10 8.09 -51.92 -0.42 0.68 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.11 1.07 7.57 -51.93 -0.39 0.67 16 38 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -31.90 316.77 -8.02 -39.92 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.56 Total: -2.24 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.88 Total: -8.39 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.44 Total: -41.82 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.10 Total: -8.75 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.90 -8.02 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391462809.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.907 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds