Wall clock time and date at job start Mon Mar 30 2020 03:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47030 * 2 1 4 4 C 1.46768 * 124.35072 * 89.99750 * 3 2 1 5 5 C 1.54480 * 105.55098 * 163.02465 * 4 3 2 6 6 H 1.08997 * 110.96887 * 267.25550 * 5 4 3 7 7 N 1.46892 * 110.96950 * 143.49258 * 5 4 3 8 8 C 1.46901 * 111.00243 * 155.00111 * 7 5 4 9 9 C 1.52998 * 109.47503 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47042 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46978 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00071 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00120 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99847 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99816 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47004 * 60.00415 * 15 13 11 17 17 H 1.48500 * 109.46736 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47391 * 299.99636 * 15 13 11 19 19 C 1.54633 * 101.76342 * 25.37218 * 5 4 3 20 20 C 1.34570 * 124.43540 * 269.92356 * 3 2 1 21 21 O 1.21276 * 124.91592 * 0.40866 * 20 3 2 22 22 H 1.08999 * 109.47580 * 300.00240 * 1 2 3 23 23 H 1.09007 * 109.46847 * 60.00225 * 1 2 3 24 24 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47036 * 240.00094 * 2 1 3 26 26 H 1.08998 * 109.46748 * 119.99685 * 2 1 3 27 27 H 1.09002 * 110.24468 * 43.97969 * 4 3 2 28 28 H 1.09002 * 110.24463 * 282.06727 * 4 3 2 29 29 H 1.00900 * 111.00209 * 278.95433 * 7 5 4 30 30 H 1.09008 * 109.46876 * 300.00282 * 8 7 5 31 31 H 1.09001 * 109.47279 * 59.99335 * 8 7 5 32 32 H 1.08996 * 109.47020 * 299.99808 * 9 8 7 33 33 H 1.09000 * 109.46927 * 60.00011 * 9 8 7 34 34 H 1.08996 * 109.47098 * 299.99811 * 10 9 8 35 35 H 1.09000 * 109.47209 * 60.00235 * 10 9 8 36 36 H 0.96999 * 119.99677 * 179.97438 * 14 13 11 37 37 H 1.09002 * 110.48603 * 93.88148 * 19 5 4 38 38 H 1.08996 * 110.48483 * 216.52510 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1736 3.3454 0.7505 6 1 4.2325 3.1056 0.8474 7 7 2.8431 4.5675 1.4955 8 6 3.9848 5.4915 1.5244 9 6 3.6034 6.7492 2.3077 10 6 4.7928 7.7112 2.3383 11 6 4.4169 8.9503 3.1093 12 1 3.4284 9.0426 3.5346 13 6 5.3350 9.9661 3.2718 14 7 6.5388 9.8535 2.7544 15 14 4.8692 11.5017 4.2281 16 1 4.4994 11.1269 5.6166 17 1 6.0235 12.4354 4.2577 18 1 3.7145 12.1637 3.5697 19 6 2.7699 3.4774 -0.7364 20 6 2.2734 2.0981 -1.1099 21 8 2.1256 1.6968 -2.2447 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.8323 1.5531 1.9384 28 1 1.3635 2.5296 1.6437 29 1 2.0251 5.0156 1.1106 30 1 4.8329 5.0061 2.0076 31 1 4.2559 5.7661 0.5050 32 1 2.7553 7.2347 1.8249 33 1 3.3327 6.4742 3.3271 34 1 5.6406 7.2255 2.8213 35 1 5.0639 7.9863 1.3190 36 1 7.1845 10.5683 2.8684 37 1 1.9742 4.2135 -0.8517 38 1 3.6334 3.7493 -1.3434 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391462809.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:00 Heat of formation + Delta-G solvation = -72.300527 kcal Electronic energy + Delta-G solvation = -16786.029563 eV Core-core repulsion = 14047.673119 eV Total energy + Delta-G solvation = -2738.356444 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.51694 -38.32776 -36.97674 -35.60308 -34.11923 -32.29206 -29.88086 -28.65234 -27.27474 -24.47657 -24.06187 -22.43501 -21.73019 -20.36650 -18.50133 -17.79549 -17.56831 -16.69501 -16.51466 -16.21902 -15.45283 -15.23318 -15.02583 -14.58759 -14.49693 -14.32237 -13.89915 -13.60426 -13.39104 -13.19836 -12.90307 -12.80112 -12.53762 -12.43866 -12.25493 -12.19005 -12.00057 -11.51316 -11.35337 -11.11463 -10.98254 -10.52032 -9.76034 -9.38693 -8.17874 -6.28419 1.42126 1.44808 1.46418 1.52654 1.99386 2.42994 2.99407 3.15617 3.46358 3.57663 3.96136 4.02492 4.15956 4.26115 4.33626 4.43842 4.48952 4.59795 4.62767 4.76773 4.78386 4.86394 4.87480 4.95171 5.07115 5.18564 5.26157 5.30138 5.55914 5.58569 5.80542 5.90189 5.97987 6.07882 6.29772 6.43815 6.89429 7.07503 7.40885 8.93728 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060017 B = 0.003386 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.418768 B = 8267.860396 C = 8463.618873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.614 5.614 4 C 0.115 3.885 5 C 0.084 3.916 6 H 0.102 0.898 7 N -0.670 5.670 8 C 0.072 3.928 9 C -0.094 4.094 10 C 0.024 3.976 11 C -0.543 4.543 12 H 0.060 0.940 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.963 3.037 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.267 1.267 19 C -0.182 4.182 20 C 0.513 3.487 21 O -0.585 6.585 22 H 0.065 0.935 23 H 0.034 0.966 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.350 0.650 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.051 0.949 33 H 0.056 0.944 34 H -0.008 1.008 35 H -0.010 1.010 36 H 0.263 0.737 37 H 0.112 0.888 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.318 -18.298 -2.144 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.348 5.348 4 C -0.008 4.008 5 C -0.028 4.028 6 H 0.120 0.880 7 N -0.301 5.301 8 C -0.057 4.057 9 C -0.132 4.132 10 C -0.014 4.014 11 C -0.581 4.581 12 H 0.079 0.921 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.788 3.212 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.192 1.192 19 C -0.224 4.224 20 C 0.301 3.699 21 O -0.465 6.465 22 H 0.085 0.915 23 H 0.053 0.947 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.127 0.873 27 H 0.121 0.879 28 H 0.106 0.894 29 H 0.170 0.830 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.011 0.989 35 H 0.008 0.992 36 H 0.072 0.928 37 H 0.131 0.869 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.124 -18.782 -2.088 21.439 hybrid contribution 0.169 1.348 -0.755 1.554 sum -9.955 -17.434 -2.843 20.276 Atomic orbital electron populations 1.22113 0.95155 1.03299 1.01635 1.21551 0.94932 0.80270 1.03888 1.48574 1.64576 1.14395 1.07218 1.22209 1.00629 0.91760 0.86174 1.22488 1.00539 0.91313 0.88448 0.87955 1.60399 1.06973 1.06451 1.56314 1.21890 0.93207 0.92407 0.98224 1.21379 0.98039 0.94050 0.99729 1.18975 0.93894 0.93638 0.94868 1.21715 0.99113 1.03174 1.34123 0.92144 1.25978 0.94895 1.02168 0.96889 1.70087 1.06004 1.34639 1.46760 0.85529 0.77771 0.78584 0.79348 1.19107 1.21015 1.19214 1.23164 1.03914 0.95158 1.00165 1.21203 0.76185 0.88315 0.84157 1.90675 1.56217 1.76532 1.23109 0.91549 0.94715 0.89574 0.91434 0.87336 0.87939 0.89414 0.83003 0.91324 0.95427 0.93044 0.92554 0.98911 0.99160 0.92836 0.86947 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 10.24 71.98 0.74 -1.46 16 2 C 0.11 1.68 6.66 86.38 0.58 2.26 16 3 N -0.61 -11.34 2.94 -817.78 -2.40 -13.75 16 4 C 0.11 1.71 7.08 86.83 0.61 2.32 16 5 C 0.08 1.54 3.49 45.98 0.16 1.70 16 6 H 0.10 1.88 7.83 -2.39 -0.02 1.86 16 7 N -0.67 -14.87 6.36 -486.12 -3.09 -17.96 16 8 C 0.07 2.12 5.55 86.30 0.48 2.60 16 9 C -0.09 -3.58 5.41 30.59 0.17 -3.42 16 10 C 0.02 1.22 4.97 29.85 0.15 1.37 16 11 C -0.54 -30.53 9.11 25.60 0.23 -30.29 16 12 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 13 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 14 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 15 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 C -0.18 -3.71 6.55 30.59 0.20 -3.51 16 20 C 0.51 12.72 8.03 87.87 0.71 13.43 16 21 O -0.58 -19.58 17.60 -3.02 -0.05 -19.63 16 22 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 24 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 25 H 0.07 1.18 7.94 -2.39 -0.02 1.16 16 26 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 1.23 8.07 -2.39 -0.02 1.21 16 29 H 0.35 7.16 8.08 -89.69 -0.72 6.43 16 30 H 0.07 2.08 8.09 -2.38 -0.02 2.06 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 35 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.11 2.13 7.57 -2.39 -0.02 2.11 16 38 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -69.36 316.77 1.54 -67.82 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.29 Total: 8.61 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 4.48 Total: -14.64 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -5.21 Total: -88.05 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.05 Total: -19.63 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -69.36 1.54 -67.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391462809.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.477 kcal (2) G-P(sol) polarization free energy of solvation -69.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds