Wall clock time and date at job start Mon Mar 30 2020 03:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.34769 * 119.99798 * 274.99913 * 12 2 1 14 14 O 1.21280 * 120.00742 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99510 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47049 * 180.02562 * 15 13 12 17 17 H 1.09004 * 110.66931 * 54.29918 * 16 15 13 18 18 C 1.54897 * 110.75731 * 291.07010 * 16 15 13 19 19 C 1.54469 * 104.09867 * 203.89178 * 18 16 15 20 20 C 1.53878 * 106.68410 * 23.34173 * 19 18 16 21 21 H 1.08999 * 110.02687 * 240.87056 * 20 19 18 22 22 N 1.46900 * 110.03198 * 119.44366 * 20 19 18 23 23 C 1.54259 * 106.60097 * 0.15802 * 20 19 18 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 28 28 H 0.97005 * 119.99239 * 94.99888 * 12 2 1 29 29 H 1.08995 * 109.47765 * 299.99977 * 15 13 12 30 30 H 1.09000 * 109.47068 * 60.00791 * 15 13 12 31 31 H 1.09000 * 110.47994 * 322.41440 * 18 16 15 32 32 H 1.08998 * 110.48682 * 85.06074 * 18 16 15 33 33 H 1.08995 * 109.85789 * 264.09748 * 19 18 16 34 34 H 1.09003 * 110.15841 * 142.74513 * 19 18 16 35 35 H 1.00904 * 111.00197 * 62.82686 * 22 20 19 36 36 H 1.00898 * 110.99822 * 186.78203 * 22 20 19 37 37 H 1.09001 * 110.48719 * 217.71451 * 23 20 19 38 38 H 1.08995 * 110.60274 * 95.12688 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1584 2.4118 15 6 2.6489 -0.7289 3.5877 16 6 2.6999 0.2540 4.7590 17 1 1.7316 0.7340 4.9010 18 6 3.8100 1.3119 4.5400 19 6 4.1547 1.7963 5.9657 20 6 3.7353 0.6712 6.9281 21 1 2.9770 1.0359 7.6209 22 7 4.9044 0.1833 7.6718 23 6 3.1538 -0.4607 6.0561 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 0.7092 1.1618 -3.4843 28 1 2.2490 -1.6318 1.1525 29 1 1.9761 -1.5507 3.8326 30 1 3.6480 -1.1213 3.3985 31 1 4.6830 0.8572 4.0718 32 1 3.4366 2.1368 3.9333 33 1 3.6000 2.7070 6.1916 34 1 5.2256 1.9808 6.0512 35 1 5.2969 0.9130 8.2478 36 1 4.6686 -0.6267 8.2253 37 1 2.3026 -0.9261 6.5530 38 1 3.9183 -1.2050 5.8339 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393311870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:28 Heat of formation + Delta-G solvation = -65.041259 kcal Electronic energy + Delta-G solvation = -17358.976937 eV Core-core repulsion = 14620.935278 eV Total energy + Delta-G solvation = -2738.041659 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.31487 -37.90207 -34.77349 -33.28131 -32.32066 -30.31948 -28.79829 -27.55061 -25.24557 -24.75603 -21.28743 -19.89291 -19.87076 -19.19307 -17.06789 -16.22630 -15.62464 -15.38896 -15.14354 -14.84849 -14.53873 -14.15747 -13.34801 -13.08064 -12.84093 -12.37115 -11.96666 -11.57253 -11.42208 -11.15633 -11.06270 -10.95023 -10.91798 -10.88749 -10.64617 -10.45275 -10.31978 -10.24789 -10.20230 -9.01744 -8.87288 -8.83799 -8.50967 -7.82458 -6.09263 -4.18475 3.27358 3.32451 3.33768 3.52539 4.12760 4.35216 4.44444 4.64573 4.70040 5.09074 5.22573 5.28750 5.44797 5.49445 5.56992 5.68806 5.75599 5.86801 5.93606 5.97876 6.15379 6.17917 6.23195 6.54444 6.65475 6.86533 7.00823 7.04212 7.19766 7.24725 7.53231 7.61941 7.74043 7.96292 8.19196 8.74971 8.83214 9.23199 9.49650 10.96671 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.051158 B = 0.004377 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.188272 B = 6395.440752 C = 6494.761669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.713 5.713 13 C 0.500 3.500 14 O -0.555 6.555 15 C -0.135 4.135 16 C -0.071 4.071 17 H 0.081 0.919 18 C -0.112 4.112 19 C -0.119 4.119 20 C 0.085 3.915 21 H 0.034 0.966 22 N -0.845 5.845 23 C -0.117 4.117 24 H 0.025 0.975 25 H 0.014 0.986 26 H 0.089 0.911 27 H 0.264 0.736 28 H 0.387 0.613 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.338 0.662 36 H 0.337 0.663 37 H 0.060 0.940 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.528 -3.319 16.549 17.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.361 5.361 13 C 0.285 3.715 14 O -0.434 6.434 15 C -0.175 4.175 16 C -0.090 4.090 17 H 0.100 0.900 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.026 4.026 21 H 0.052 0.948 22 N -0.375 5.375 23 C -0.155 4.155 24 H 0.044 0.956 25 H 0.033 0.967 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.219 0.781 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.078 0.922 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.543 -2.455 15.686 16.514 hybrid contribution -0.185 -0.776 -0.034 0.798 sum 4.358 -3.230 15.652 16.565 Atomic orbital electron populations 1.22068 0.98619 0.98984 1.00804 1.18701 0.90924 0.93979 0.80202 0.93465 1.21206 1.32391 1.13186 0.90437 0.92181 1.24892 0.94833 0.94963 0.99039 1.69897 1.35909 1.22452 1.23922 0.86515 0.79174 0.79584 0.81852 1.20180 1.21142 1.20180 1.46545 1.65294 1.13491 1.10730 1.20482 0.78561 0.87625 0.84840 1.90624 1.51351 1.16185 1.85263 1.21711 1.02651 0.99192 0.93983 1.21772 0.99844 0.95155 0.92214 0.90050 1.22383 0.97664 0.99292 0.95609 1.22245 1.01357 0.96844 0.95294 1.21997 0.90417 0.95419 0.94781 0.94796 1.58903 1.32623 1.11161 1.34771 1.22517 0.99907 0.97463 0.95579 0.95590 0.96720 0.89248 0.92564 0.78052 0.89746 0.89492 0.91972 0.90239 0.92222 0.91231 0.85011 0.85034 0.92162 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.84 2.56 -69.08 -0.18 6.66 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.36 8.73 -34.44 -0.30 -14.66 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.24 11.32 55.43 0.63 -24.61 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.71 -15.05 5.07 -54.93 -0.28 -15.32 16 13 C 0.50 9.94 7.60 -10.99 -0.08 9.85 16 14 O -0.55 -13.10 14.34 5.56 0.08 -13.02 16 15 C -0.14 -1.93 5.20 -27.88 -0.15 -2.08 16 16 C -0.07 -0.96 2.46 -88.62 -0.22 -1.18 16 17 H 0.08 1.23 7.97 -51.93 -0.41 0.81 16 18 C -0.11 -1.60 5.69 -24.96 -0.14 -1.74 16 19 C -0.12 -1.40 6.59 -25.50 -0.17 -1.57 16 20 C 0.08 0.88 4.03 -66.60 -0.27 0.61 16 21 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 22 N -0.84 -7.50 9.10 -3.72 -0.03 -7.53 16 23 C -0.12 -1.27 5.93 -25.07 -0.15 -1.42 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 28 H 0.39 7.08 8.54 -40.82 -0.35 6.73 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 31 H 0.06 0.90 7.98 -51.93 -0.41 0.49 16 32 H 0.08 1.34 7.21 -51.93 -0.37 0.96 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 35 H 0.34 2.50 9.07 -39.29 -0.36 2.14 16 36 H 0.34 2.46 9.01 -39.29 -0.35 2.11 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.85 7.96 -51.93 -0.41 0.43 16 LS Contribution 306.30 15.07 4.62 4.62 Total: -1.00 -30.57 306.30 -7.70 -38.27 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.29 Total: 8.98 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.40 Total: -7.19 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.32 Total: -47.47 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.08 Total: -13.02 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.57 -7.70 -38.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393311870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.767 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds