Wall clock time and date at job start Mon Mar 30 2020 03:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.34769 * 119.99798 * 274.99913 * 12 2 1 14 14 O 1.21280 * 120.00742 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99510 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47049 * 180.02562 * 15 13 12 17 17 H 1.09004 * 110.66931 * 54.29918 * 16 15 13 18 18 C 1.54897 * 110.75731 * 291.07010 * 16 15 13 19 19 C 1.54469 * 104.09867 * 203.89178 * 18 16 15 20 20 C 1.53878 * 106.68410 * 23.34173 * 19 18 16 21 21 H 1.08999 * 110.02687 * 240.87056 * 20 19 18 22 22 N 1.46900 * 110.03198 * 119.44366 * 20 19 18 23 23 C 1.54259 * 106.60097 * 0.15802 * 20 19 18 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 28 28 H 0.97005 * 119.99239 * 94.99888 * 12 2 1 29 29 H 1.08995 * 109.47765 * 299.99977 * 15 13 12 30 30 H 1.09000 * 109.47068 * 60.00791 * 15 13 12 31 31 H 1.09000 * 110.47994 * 322.41440 * 18 16 15 32 32 H 1.08998 * 110.48682 * 85.06074 * 18 16 15 33 33 H 1.08995 * 109.85789 * 264.09748 * 19 18 16 34 34 H 1.09003 * 110.15841 * 142.74513 * 19 18 16 35 35 H 1.00904 * 111.00197 * 62.82686 * 22 20 19 36 36 H 1.00898 * 110.99822 * 186.78203 * 22 20 19 37 37 H 1.09001 * 110.48719 * 217.71451 * 23 20 19 38 38 H 1.08995 * 110.60274 * 95.12688 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1584 2.4118 15 6 2.6489 -0.7289 3.5877 16 6 2.6999 0.2540 4.7590 17 1 1.7316 0.7340 4.9010 18 6 3.8100 1.3119 4.5400 19 6 4.1547 1.7963 5.9657 20 6 3.7353 0.6712 6.9281 21 1 2.9770 1.0359 7.6209 22 7 4.9044 0.1833 7.6718 23 6 3.1538 -0.4607 6.0561 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 0.7092 1.1618 -3.4843 28 1 2.2490 -1.6318 1.1525 29 1 1.9761 -1.5507 3.8326 30 1 3.6480 -1.1213 3.3985 31 1 4.6830 0.8572 4.0718 32 1 3.4366 2.1368 3.9333 33 1 3.6000 2.7070 6.1916 34 1 5.2256 1.9808 6.0512 35 1 5.2969 0.9130 8.2478 36 1 4.6686 -0.6267 8.2253 37 1 2.3026 -0.9261 6.5530 38 1 3.9183 -1.2050 5.8339 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393311870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:27 Heat of formation + Delta-G solvation = -87.254612 kcal Electronic energy + Delta-G solvation = -17359.940180 eV Core-core repulsion = 14620.935278 eV Total energy + Delta-G solvation = -2739.004902 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.76820 -39.10656 -36.67100 -34.33341 -34.21774 -31.65429 -30.39788 -28.59699 -27.34083 -25.91657 -23.05864 -21.33328 -20.81406 -20.67325 -18.81437 -17.52490 -17.17980 -16.93890 -16.16675 -16.10913 -15.90853 -15.64184 -14.79537 -14.42899 -14.32267 -14.13647 -13.66337 -13.07150 -13.02763 -12.80363 -12.65927 -12.37899 -12.25426 -12.14735 -12.02626 -11.93653 -11.84482 -11.53553 -11.40376 -11.10751 -10.63728 -10.47382 -9.68007 -9.54646 -8.17039 -6.34925 1.44787 1.47192 1.54981 1.93453 2.37242 2.71427 3.13036 3.62576 3.66373 3.67387 4.09572 4.17096 4.33598 4.44305 4.60028 4.64480 4.71956 4.78227 4.85574 4.90444 4.94049 5.04699 5.09459 5.13320 5.19172 5.27121 5.39585 5.46516 5.55836 5.64077 5.71777 5.93910 6.11669 6.35057 6.68397 6.73781 7.05119 7.33649 7.65514 8.89087 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.051158 B = 0.004377 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.188272 B = 6395.440752 C = 6494.761669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.263 1.263 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.711 5.711 13 C 0.493 3.507 14 O -0.598 6.598 15 C -0.121 4.121 16 C -0.072 4.072 17 H 0.062 0.938 18 C -0.115 4.115 19 C -0.116 4.116 20 C 0.089 3.911 21 H 0.042 0.958 22 N -0.849 5.849 23 C -0.105 4.105 24 H 0.040 0.960 25 H 0.011 0.989 26 H 0.065 0.935 27 H 0.265 0.735 28 H 0.404 0.596 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.347 0.653 36 H 0.349 0.651 37 H 0.078 0.922 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.470 -5.745 17.731 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.013 0.987 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.360 5.360 13 C 0.281 3.719 14 O -0.480 6.480 15 C -0.161 4.161 16 C -0.091 4.091 17 H 0.081 0.919 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.023 4.023 21 H 0.060 0.940 22 N -0.380 5.380 23 C -0.143 4.143 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.239 0.761 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.097 0.903 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.501 -4.922 16.908 18.449 hybrid contribution -0.471 0.054 -0.375 0.605 sum 5.030 -4.868 16.533 17.953 Atomic orbital electron populations 1.21882 0.98446 0.99358 0.99415 1.18296 0.91038 0.91826 0.82302 0.98731 1.21549 1.32602 1.13588 0.90914 0.90864 1.25832 0.94862 0.95590 1.02411 1.70055 1.37051 1.23978 1.24640 0.85382 0.78639 0.78730 0.77486 1.18755 1.21185 1.19576 1.46332 1.65507 1.14223 1.09908 1.21534 0.77278 0.87265 0.85840 1.90613 1.52964 1.18452 1.85998 1.21720 1.04133 0.99412 0.90830 1.21759 0.98662 0.95078 0.93639 0.91900 1.22335 0.97727 0.98506 0.96723 1.22207 1.01550 0.97589 0.94050 1.21888 0.91120 0.94583 0.94660 0.93992 1.58833 1.31842 1.11979 1.35387 1.22436 1.00718 0.97346 0.93787 0.94104 0.97034 0.91657 0.92577 0.76069 0.86579 0.87306 0.92334 0.93976 0.92304 0.90948 0.84005 0.83726 0.90309 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.86 9.26 71.98 0.67 -6.19 16 2 C 0.27 14.29 2.56 44.24 0.11 14.40 16 3 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 4 C -0.55 -29.51 8.73 25.60 0.22 -29.29 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.71 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 8 Si 0.97 42.38 29.54 68.60 2.03 44.40 16 9 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 10 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 12 N -0.71 -29.83 5.07 -446.10 -2.26 -32.09 16 13 C 0.49 19.62 7.60 87.66 0.67 20.29 16 14 O -0.60 -29.42 14.34 -3.03 -0.04 -29.47 16 15 C -0.12 -3.21 5.20 29.85 0.16 -3.06 16 16 C -0.07 -1.88 2.46 -9.50 -0.02 -1.90 16 17 H 0.06 1.88 7.97 -2.39 -0.02 1.86 16 18 C -0.12 -3.31 5.69 31.74 0.18 -3.13 16 19 C -0.12 -2.62 6.59 31.39 0.21 -2.41 16 20 C 0.09 1.62 4.03 45.64 0.18 1.80 16 21 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 22 N -0.85 -12.57 9.10 -165.68 -1.51 -14.08 16 23 C -0.11 -1.96 5.93 31.67 0.19 -1.77 16 24 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 27 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.40 14.12 8.54 -92.70 -0.79 13.32 16 29 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.11 2.48 8.05 -2.39 -0.02 2.46 16 31 H 0.06 1.68 7.98 -2.39 -0.02 1.67 16 32 H 0.04 1.50 7.21 -2.39 -0.02 1.49 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.58 7.92 -2.39 -0.02 1.56 16 35 H 0.35 4.21 9.07 -89.69 -0.81 3.40 16 36 H 0.35 3.92 9.01 -89.70 -0.81 3.11 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.50 7.96 -2.39 -0.02 1.48 16 Total: -1.00 -68.17 306.30 0.12 -68.05 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -1.35 Total: 26.67 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 3.01 Total: -10.11 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -3.53 Total: -99.54 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.04 Total: -29.47 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -68.17 0.12 -68.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393311870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.209 kcal (2) G-P(sol) polarization free energy of solvation -68.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds