Wall clock time and date at job start Mon Mar 30 2020 03:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46966 * 2 1 4 4 C 1.50695 * 109.47406 * 239.99792 * 2 1 3 5 5 H 1.07999 * 120.00252 * 245.34710 * 4 2 1 6 6 C 1.37882 * 120.00017 * 65.35332 * 4 2 1 7 7 N 1.31512 * 119.99807 * 5.14042 * 6 4 2 8 8 Si 1.86797 * 119.99961 * 185.14713 * 6 4 2 9 9 H 1.48503 * 109.47312 * 84.99700 * 8 6 4 10 10 H 1.48495 * 109.47272 * 324.99487 * 8 6 4 11 11 H 1.48502 * 109.47008 * 204.99631 * 8 6 4 12 12 N 1.46505 * 109.47075 * 119.99685 * 2 1 3 13 13 C 1.34774 * 120.00085 * 275.00460 * 12 2 1 14 14 O 1.21280 * 119.99975 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00029 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47273 * 179.97438 * 15 13 12 17 17 H 1.09001 * 110.42995 * 56.09303 * 16 15 13 18 18 C 1.54888 * 110.48677 * 293.54708 * 16 15 13 19 19 C 1.54889 * 102.74675 * 203.37598 * 18 16 15 20 20 C 1.54272 * 104.19618 * 37.94291 * 19 18 16 21 21 H 1.08997 * 110.02759 * 95.67473 * 20 19 18 22 22 N 1.46894 * 110.03458 * 217.05496 * 20 19 18 23 23 C 1.53874 * 106.59739 * 336.38742 * 20 19 18 24 24 H 1.08992 * 109.47480 * 294.97156 * 1 2 3 25 25 H 1.08993 * 109.46657 * 54.97693 * 1 2 3 26 26 H 1.09004 * 109.46489 * 174.97207 * 1 2 3 27 27 H 0.96997 * 120.00294 * 180.02562 * 7 6 4 28 28 H 0.97005 * 120.00023 * 95.00075 * 12 2 1 29 29 H 1.08999 * 109.47084 * 299.99866 * 15 13 12 30 30 H 1.09001 * 109.47446 * 59.99702 * 15 13 12 31 31 H 1.08996 * 110.75387 * 321.69373 * 18 16 15 32 32 H 1.08998 * 110.75202 * 85.06402 * 18 16 15 33 33 H 1.09004 * 110.48904 * 156.62142 * 19 18 16 34 34 H 1.09001 * 110.49110 * 279.26633 * 19 18 16 35 35 H 1.00910 * 111.00149 * 298.55194 * 22 20 19 36 36 H 1.00905 * 111.00302 * 62.49753 * 22 20 19 37 37 H 1.08997 * 110.03373 * 240.71120 * 23 20 19 38 38 H 1.09000 * 110.02984 * 119.28078 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5803 -1.6361 -1.1336 6 6 1.7928 -0.1786 -2.4797 7 7 1.2154 0.9975 -2.5940 8 14 2.2880 -1.1286 -4.0099 9 1 1.2114 -2.0868 -4.3678 10 1 3.5453 -1.8730 -3.7451 11 1 2.5010 -0.1811 -5.1334 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1586 2.4115 15 6 2.6488 -0.7287 3.5878 16 6 2.7009 0.2546 4.7589 17 1 1.7231 0.7094 4.9176 18 6 3.7711 1.3449 4.5040 19 6 4.1120 1.8301 5.9349 20 6 4.0802 0.5451 6.7878 21 1 5.0869 0.1402 6.8906 22 7 3.5169 0.8346 8.1132 23 6 3.1829 -0.4567 6.0401 24 1 -0.3634 0.4338 0.9315 25 1 -0.3632 0.5898 -0.8415 26 1 -0.3632 -1.0238 -0.0901 27 1 1.0465 1.3716 -3.4728 28 1 2.2491 -1.6318 1.1527 29 1 1.9759 -1.5505 3.8327 30 1 3.6479 -1.1213 3.3988 31 1 4.6501 0.9179 4.0212 32 1 3.3587 2.1590 3.9080 33 1 5.1049 2.2794 5.9589 34 1 3.3626 2.5396 6.2859 35 1 4.0832 1.5078 8.6076 36 1 2.5616 1.1509 8.0390 37 1 2.3287 -0.7282 6.6604 38 1 3.7542 -1.3478 5.7800 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393311872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:30 Heat of formation + Delta-G solvation = -67.516739 kcal Electronic energy + Delta-G solvation = -17387.287958 eV Core-core repulsion = 14649.138955 eV Total energy + Delta-G solvation = -2738.149004 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.41545 -37.99863 -34.78344 -33.24645 -32.32162 -30.27574 -28.88631 -27.56446 -25.24323 -24.73212 -21.30482 -20.45046 -19.54340 -19.26159 -17.23744 -16.33945 -15.79320 -15.32018 -15.15129 -14.63640 -14.33004 -13.87723 -13.42487 -13.08431 -12.83705 -12.38524 -12.29976 -11.84403 -11.64294 -11.23262 -11.08095 -11.01836 -10.91127 -10.75198 -10.65496 -10.57733 -10.38036 -10.31827 -10.24319 -9.06350 -8.90743 -8.76277 -8.53217 -7.85912 -6.12919 -4.19702 3.25024 3.31489 3.33122 3.49165 4.11796 4.35173 4.44786 4.62838 4.77893 4.90598 5.21044 5.32964 5.39328 5.45146 5.52363 5.63668 5.68441 5.80981 5.85512 5.91334 6.08360 6.13022 6.26468 6.49910 6.59514 6.80790 6.91462 7.00790 7.12092 7.27202 7.48708 7.58905 7.70610 7.88464 8.09615 8.72952 8.81806 9.20425 9.47586 10.95446 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.054266 B = 0.004366 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.857091 B = 6411.395031 C = 6452.921738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.262 3.738 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.713 5.713 13 C 0.499 3.501 14 O -0.555 6.555 15 C -0.136 4.136 16 C -0.074 4.074 17 H 0.079 0.921 18 C -0.114 4.114 19 C -0.160 4.160 20 C 0.086 3.914 21 H 0.080 0.920 22 N -0.846 5.846 23 C -0.116 4.116 24 H 0.016 0.984 25 H 0.073 0.927 26 H 0.029 0.971 27 H 0.264 0.736 28 H 0.387 0.613 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.337 0.663 36 H 0.340 0.660 37 H 0.070 0.930 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 -2.723 15.339 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.160 3.840 3 H 0.071 0.929 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.360 5.360 13 C 0.285 3.715 14 O -0.434 6.434 15 C -0.176 4.176 16 C -0.093 4.093 17 H 0.097 0.903 18 C -0.152 4.152 19 C -0.199 4.199 20 C -0.026 4.026 21 H 0.098 0.902 22 N -0.375 5.375 23 C -0.154 4.154 24 H 0.036 0.964 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.219 0.781 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.089 0.911 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.211 -2.520 15.365 16.129 hybrid contribution 0.240 0.009 -1.376 1.397 sum 4.451 -2.512 13.989 14.893 Atomic orbital electron populations 1.22005 0.98884 0.99434 0.99565 1.18716 0.90590 0.94392 0.80263 0.92930 1.21198 1.36832 1.08754 0.90558 0.92147 1.24900 0.94966 0.94727 0.99057 1.69957 1.42090 1.15869 1.24119 0.86499 0.78905 0.79634 0.82274 1.20459 1.19911 1.21137 1.46543 1.65265 1.13495 1.10721 1.20488 0.78592 0.87628 0.84840 1.90624 1.51359 1.16159 1.85265 1.21764 1.02621 0.99240 0.94013 1.21703 0.99943 0.95087 0.92536 0.90270 1.22497 0.98008 0.99179 0.95485 1.23241 1.01136 0.98033 0.97536 1.22113 0.98422 0.94598 0.87426 0.90223 1.59015 1.06967 1.52534 1.18940 1.22292 0.99454 0.97906 0.95771 0.96442 0.90790 0.95206 0.92593 0.78071 0.89665 0.89551 0.91897 0.89997 0.91997 0.91917 0.85058 0.84716 0.91090 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.26 37.16 0.34 -3.14 16 2 C 0.26 6.72 2.43 -69.08 -0.17 6.55 16 3 H 0.05 1.57 7.56 -51.93 -0.39 1.18 16 4 C -0.53 -14.29 8.67 -34.44 -0.30 -14.59 16 5 H 0.06 1.54 7.72 -52.49 -0.41 1.13 16 6 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 7 N -0.88 -25.27 11.98 55.43 0.66 -24.60 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.71 -14.81 5.07 -54.93 -0.28 -15.09 16 13 C 0.50 9.75 7.58 -10.99 -0.08 9.67 16 14 O -0.55 -12.92 14.17 5.56 0.08 -12.84 16 15 C -0.14 -1.89 5.06 -27.88 -0.14 -2.03 16 16 C -0.07 -0.97 2.48 -88.96 -0.22 -1.19 16 17 H 0.08 1.16 8.02 -51.93 -0.42 0.75 16 18 C -0.11 -1.56 5.63 -24.74 -0.14 -1.70 16 19 C -0.16 -1.74 6.51 -25.07 -0.16 -1.90 16 20 C 0.09 0.86 4.04 -66.60 -0.27 0.59 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 22 N -0.85 -7.62 9.14 -3.72 -0.03 -7.65 16 23 C -0.12 -1.24 6.11 -25.61 -0.16 -1.39 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 1.98 6.84 -51.93 -0.36 1.63 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 28 H 0.39 6.95 8.53 -40.82 -0.35 6.60 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 31 H 0.06 0.85 8.02 -51.93 -0.42 0.43 16 32 H 0.08 1.36 7.06 -51.93 -0.37 1.00 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.68 8.03 -51.93 -0.42 0.26 16 35 H 0.34 2.54 9.06 -39.29 -0.36 2.18 16 36 H 0.34 2.90 8.93 -39.29 -0.35 2.55 16 37 H 0.07 0.75 7.89 -51.93 -0.41 0.34 16 38 H 0.07 0.68 7.84 -51.93 -0.41 0.28 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -30.31 306.88 -7.67 -37.98 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.31 Total: 9.25 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.39 Total: -7.39 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.35 Total: -47.35 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.31 -7.67 -37.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393311872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.540 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds