Wall clock time and date at job start Mon Mar 30 2020 03:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46966 * 2 1 4 4 C 1.50695 * 109.47406 * 239.99792 * 2 1 3 5 5 H 1.07999 * 120.00252 * 245.34710 * 4 2 1 6 6 C 1.37882 * 120.00017 * 65.35332 * 4 2 1 7 7 N 1.31512 * 119.99807 * 5.14042 * 6 4 2 8 8 Si 1.86797 * 119.99961 * 185.14713 * 6 4 2 9 9 H 1.48503 * 109.47312 * 84.99700 * 8 6 4 10 10 H 1.48495 * 109.47272 * 324.99487 * 8 6 4 11 11 H 1.48502 * 109.47008 * 204.99631 * 8 6 4 12 12 N 1.46505 * 109.47075 * 119.99685 * 2 1 3 13 13 C 1.34774 * 120.00085 * 275.00460 * 12 2 1 14 14 O 1.21280 * 119.99975 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00029 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47273 * 179.97438 * 15 13 12 17 17 H 1.09001 * 110.42995 * 56.09303 * 16 15 13 18 18 C 1.54888 * 110.48677 * 293.54708 * 16 15 13 19 19 C 1.54889 * 102.74675 * 203.37598 * 18 16 15 20 20 C 1.54272 * 104.19618 * 37.94291 * 19 18 16 21 21 H 1.08997 * 110.02759 * 95.67473 * 20 19 18 22 22 N 1.46894 * 110.03458 * 217.05496 * 20 19 18 23 23 C 1.53874 * 106.59739 * 336.38742 * 20 19 18 24 24 H 1.08992 * 109.47480 * 294.97156 * 1 2 3 25 25 H 1.08993 * 109.46657 * 54.97693 * 1 2 3 26 26 H 1.09004 * 109.46489 * 174.97207 * 1 2 3 27 27 H 0.96997 * 120.00294 * 180.02562 * 7 6 4 28 28 H 0.97005 * 120.00023 * 95.00075 * 12 2 1 29 29 H 1.08999 * 109.47084 * 299.99866 * 15 13 12 30 30 H 1.09001 * 109.47446 * 59.99702 * 15 13 12 31 31 H 1.08996 * 110.75387 * 321.69373 * 18 16 15 32 32 H 1.08998 * 110.75202 * 85.06402 * 18 16 15 33 33 H 1.09004 * 110.48904 * 156.62142 * 19 18 16 34 34 H 1.09001 * 110.49110 * 279.26633 * 19 18 16 35 35 H 1.00910 * 111.00149 * 298.55194 * 22 20 19 36 36 H 1.00905 * 111.00302 * 62.49753 * 22 20 19 37 37 H 1.08997 * 110.03373 * 240.71120 * 23 20 19 38 38 H 1.09000 * 110.02984 * 119.28078 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5803 -1.6361 -1.1336 6 6 1.7928 -0.1786 -2.4797 7 7 1.2154 0.9975 -2.5940 8 14 2.2880 -1.1286 -4.0099 9 1 1.2114 -2.0868 -4.3678 10 1 3.5453 -1.8730 -3.7451 11 1 2.5010 -0.1811 -5.1334 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1586 2.4115 15 6 2.6488 -0.7287 3.5878 16 6 2.7009 0.2546 4.7589 17 1 1.7231 0.7094 4.9176 18 6 3.7711 1.3449 4.5040 19 6 4.1120 1.8301 5.9349 20 6 4.0802 0.5451 6.7878 21 1 5.0869 0.1402 6.8906 22 7 3.5169 0.8346 8.1132 23 6 3.1829 -0.4567 6.0401 24 1 -0.3634 0.4338 0.9315 25 1 -0.3632 0.5898 -0.8415 26 1 -0.3632 -1.0238 -0.0901 27 1 1.0465 1.3716 -3.4728 28 1 2.2491 -1.6318 1.1527 29 1 1.9759 -1.5505 3.8327 30 1 3.6479 -1.1213 3.3988 31 1 4.6501 0.9179 4.0212 32 1 3.3587 2.1590 3.9080 33 1 5.1049 2.2794 5.9589 34 1 3.3626 2.5396 6.2859 35 1 4.0832 1.5078 8.6076 36 1 2.5616 1.1509 8.0390 37 1 2.3287 -0.7282 6.6604 38 1 3.7542 -1.3478 5.7800 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393311872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:30 Heat of formation + Delta-G solvation = -89.552341 kcal Electronic energy + Delta-G solvation = -17388.243494 eV Core-core repulsion = 14649.138955 eV Total energy + Delta-G solvation = -2739.104539 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81035 -39.20038 -36.65668 -34.32176 -34.19260 -31.61932 -30.41080 -28.58773 -27.32010 -25.86027 -23.04948 -21.54947 -21.01663 -20.43469 -18.90713 -17.60726 -17.20629 -16.93436 -16.50087 -15.99360 -15.87784 -14.98054 -14.71976 -14.35283 -14.30986 -14.14948 -13.70036 -13.23320 -13.07504 -12.91179 -12.74889 -12.67334 -12.34707 -12.15626 -12.09183 -11.96934 -11.64902 -11.56026 -11.38476 -11.12081 -10.62863 -10.49443 -9.69016 -9.54191 -8.20054 -6.35210 1.44126 1.45227 1.55075 1.93125 2.36738 2.71176 3.12289 3.55880 3.69641 3.81999 3.97169 4.16234 4.40198 4.44701 4.61003 4.64155 4.69958 4.74926 4.81000 4.85502 4.87374 4.95443 5.05238 5.10132 5.16891 5.34064 5.42747 5.46947 5.53585 5.63511 5.64675 5.92953 6.05291 6.29836 6.63363 6.74638 7.04641 7.33064 7.65309 8.88858 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.054266 B = 0.004366 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.857091 B = 6411.395031 C = 6452.921738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.268 3.732 3 H -0.001 1.001 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.263 1.263 11 H -0.288 1.288 12 N -0.710 5.710 13 C 0.492 3.508 14 O -0.599 6.599 15 C -0.123 4.123 16 C -0.072 4.072 17 H 0.057 0.943 18 C -0.118 4.118 19 C -0.152 4.152 20 C 0.092 3.908 21 H 0.089 0.911 22 N -0.847 5.847 23 C -0.107 4.107 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.265 0.735 28 H 0.404 0.596 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.347 0.653 36 H 0.343 0.657 37 H 0.075 0.925 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.456 -5.164 16.434 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.164 3.836 3 H 0.017 0.983 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.187 1.187 11 H -0.214 1.214 12 N -0.360 5.360 13 C 0.280 3.720 14 O -0.481 6.481 15 C -0.163 4.163 16 C -0.091 4.091 17 H 0.076 0.924 18 C -0.156 4.156 19 C -0.192 4.192 20 C -0.020 4.020 21 H 0.107 0.893 22 N -0.376 5.376 23 C -0.144 4.144 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.239 0.761 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.094 0.906 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.319 -4.998 16.498 18.040 hybrid contribution -0.107 0.846 -1.681 1.884 sum 5.211 -4.152 14.817 16.247 Atomic orbital electron populations 1.21819 0.98546 0.99758 0.98353 1.18304 0.90832 0.92139 0.82343 0.98342 1.21552 1.36814 1.09154 0.91016 0.90773 1.25841 0.94871 0.95484 1.02499 1.70114 1.43352 1.17625 1.24840 0.85363 0.79045 0.78134 0.77834 1.19505 1.18677 1.21377 1.46329 1.65504 1.14233 1.09890 1.21555 0.77304 0.87263 0.85848 1.90616 1.52970 1.18458 1.86006 1.21789 1.04275 0.99401 0.90798 1.21667 0.98754 0.94975 0.93745 0.92402 1.22453 0.98087 0.98355 0.96719 1.23206 1.01460 0.98772 0.95764 1.22056 0.98821 0.93624 0.87525 0.89287 1.59023 1.07342 1.53031 1.18235 1.22224 0.99892 0.98205 0.94120 0.96516 0.93361 0.93603 0.92629 0.76065 0.86695 0.86979 0.91729 0.94078 0.91126 0.92244 0.84018 0.84441 0.90594 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 9.26 71.98 0.67 -5.73 16 2 C 0.27 14.05 2.43 44.24 0.11 14.15 16 3 H 0.00 -0.09 7.56 -2.39 -0.02 -0.10 16 4 C -0.55 -29.19 8.67 25.60 0.22 -28.97 16 5 H 0.07 3.66 7.72 -2.91 -0.02 3.64 16 6 C 0.01 0.71 5.29 84.66 0.45 1.16 16 7 N -0.92 -54.04 11.98 21.45 0.26 -53.78 16 8 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 N -0.71 -29.31 5.07 -446.09 -2.26 -31.57 16 13 C 0.49 19.22 7.58 87.66 0.66 19.88 16 14 O -0.60 -29.05 14.17 -3.03 -0.04 -29.10 16 15 C -0.12 -3.14 5.06 29.85 0.15 -2.99 16 16 C -0.07 -1.81 2.48 -9.72 -0.02 -1.83 16 17 H 0.06 1.70 8.02 -2.39 -0.02 1.68 16 18 C -0.12 -3.22 5.63 31.88 0.18 -3.04 16 19 C -0.15 -3.14 6.51 31.67 0.21 -2.94 16 20 C 0.09 1.59 4.04 45.64 0.18 1.78 16 21 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 22 N -0.85 -13.14 9.14 -165.68 -1.51 -14.66 16 23 C -0.11 -1.95 6.11 31.32 0.19 -1.76 16 24 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 2.67 6.84 -2.39 -0.02 2.65 16 26 H 0.04 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.40 13.79 8.53 -92.70 -0.79 13.00 16 29 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.11 2.36 8.10 -2.39 -0.02 2.34 16 31 H 0.06 1.70 8.02 -2.39 -0.02 1.68 16 32 H 0.04 1.44 7.06 -2.39 -0.02 1.43 16 33 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.06 1.25 8.03 -2.39 -0.02 1.24 16 35 H 0.35 4.37 9.06 -89.69 -0.81 3.56 16 36 H 0.34 5.14 8.93 -89.69 -0.80 4.34 16 37 H 0.08 1.36 7.89 -2.39 -0.02 1.34 16 38 H 0.09 1.32 7.84 -2.39 -0.02 1.31 16 Total: -1.00 -67.84 306.88 0.12 -67.72 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -1.34 Total: 27.42 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 3.00 Total: -10.28 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -3.52 Total: -100.01 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.04 Total: -29.10 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -67.84 0.12 -67.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393311872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.837 kcal (2) G-P(sol) polarization free energy of solvation -67.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds