Wall clock time and date at job start Mon Mar 30 2020 03:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46974 * 2 1 4 4 C 1.50695 * 109.46853 * 240.00492 * 2 1 3 5 5 H 1.08003 * 120.00404 * 245.45722 * 4 2 1 6 6 C 1.37884 * 120.00377 * 65.45728 * 4 2 1 7 7 N 1.31509 * 119.99696 * 9.55967 * 6 4 2 8 8 Si 1.86796 * 120.00110 * 189.55966 * 6 4 2 9 9 H 1.48503 * 109.47224 * 84.99503 * 8 6 4 10 10 H 1.48502 * 109.46979 * 204.99565 * 8 6 4 11 11 H 1.48504 * 109.47362 * 324.99189 * 8 6 4 12 12 N 1.46495 * 109.47391 * 120.00044 * 2 1 3 13 13 C 1.34772 * 120.00030 * 275.00112 * 12 2 1 14 14 O 1.21280 * 120.00286 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99646 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.46982 * 179.97438 * 15 13 12 17 17 H 1.08997 * 110.67822 * 305.70523 * 16 15 13 18 18 C 1.54886 * 110.75540 * 68.93860 * 16 15 13 19 19 C 1.54269 * 104.19726 * 156.44059 * 18 16 15 20 20 C 1.53870 * 106.60061 * 336.38985 * 19 18 16 21 21 H 1.08999 * 110.03055 * 240.72043 * 20 19 18 22 22 N 1.46896 * 110.03433 * 119.33196 * 20 19 18 23 23 C 1.54271 * 106.59448 * 359.97438 * 20 19 18 24 24 H 1.08993 * 109.47152 * 63.67585 * 1 2 3 25 25 H 1.09001 * 109.46857 * 183.67792 * 1 2 3 26 26 H 1.09004 * 109.46614 * 303.67564 * 1 2 3 27 27 H 0.96998 * 120.00358 * 180.02562 * 7 6 4 28 28 H 0.96998 * 119.99825 * 95.00082 * 12 2 1 29 29 H 1.09006 * 109.47197 * 60.00112 * 15 13 12 30 30 H 1.08995 * 109.47428 * 299.99932 * 15 13 12 31 31 H 1.09001 * 110.48559 * 275.12052 * 18 16 15 32 32 H 1.08998 * 110.49043 * 37.76325 * 18 16 15 33 33 H 1.09007 * 110.03295 * 95.67705 * 19 18 16 34 34 H 1.09002 * 110.03337 * 217.05149 * 19 18 16 35 35 H 1.00899 * 110.99856 * 61.45528 * 22 20 19 36 36 H 1.00903 * 111.00194 * 185.41277 * 22 20 19 37 37 H 1.08998 * 110.48735 * 264.92976 * 23 20 19 38 38 H 1.09001 * 110.48435 * 142.29011 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5786 -1.6370 -1.1340 6 6 1.7945 -0.1772 -2.4797 7 7 1.2992 1.0357 -2.5935 8 14 2.1758 -1.1778 -4.0102 9 1 1.0238 -2.0608 -4.3242 10 1 2.4225 -0.2611 -5.1522 11 1 3.3844 -2.0071 -3.7712 12 7 2.0185 -0.6906 1.1961 13 6 2.1472 -0.0183 2.3570 14 8 1.8592 1.1586 2.4115 15 6 2.6491 -0.7289 3.5876 16 6 2.7013 0.2543 4.7586 17 1 3.2892 1.1339 4.4968 18 6 1.2728 0.6602 5.1987 19 6 1.4415 1.1078 6.6653 20 6 2.7109 0.4163 7.1928 21 1 2.4619 -0.2287 8.0354 22 7 3.6982 1.4230 7.6046 23 6 3.2688 -0.4280 6.0284 24 1 -0.3633 0.4557 -0.9210 25 1 -0.3633 -1.0256 0.0659 26 1 -0.3633 0.5699 0.8553 27 1 1.1315 1.4107 -3.4722 28 1 2.2492 -1.6317 1.1525 29 1 3.6482 -1.1214 3.3984 30 1 1.9762 -1.5507 3.8324 31 1 0.9053 1.4849 4.5880 32 1 0.5973 -0.1929 5.1356 33 1 1.5584 2.1905 6.7142 34 1 0.5761 0.7993 7.2519 35 1 3.3384 1.9978 8.3517 36 1 4.5690 0.9880 7.8702 37 1 2.9157 -1.4567 6.0996 38 1 4.3584 -0.3972 6.0228 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393311873.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:33 Heat of formation + Delta-G solvation = -65.457263 kcal Electronic energy + Delta-G solvation = -17394.992168 eV Core-core repulsion = 14656.932470 eV Total energy + Delta-G solvation = -2738.059698 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.30516 -37.90842 -34.73670 -33.16956 -32.28858 -30.34765 -28.86603 -27.55108 -25.21445 -24.83979 -21.31586 -19.96814 -19.67537 -19.22117 -17.07970 -16.11049 -15.66102 -15.32985 -15.11746 -14.94912 -14.45052 -14.04256 -13.54129 -13.06841 -12.70033 -12.27696 -11.98990 -11.66582 -11.42880 -11.17049 -11.03868 -10.97830 -10.90907 -10.87226 -10.71509 -10.40712 -10.30667 -10.29073 -10.22582 -9.07307 -8.81542 -8.76079 -8.46157 -7.82552 -6.10980 -4.16207 3.27021 3.33561 3.35066 3.55059 4.17482 4.39015 4.42078 4.64281 4.74030 5.00020 5.22536 5.39757 5.44893 5.50659 5.56035 5.70343 5.82033 5.82829 5.88440 5.97876 6.11363 6.21703 6.26328 6.57758 6.73024 6.80450 6.94475 7.08400 7.13540 7.29502 7.50931 7.62699 7.72676 7.91306 8.12096 8.77494 8.85435 9.25549 9.50462 10.97573 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057689 B = 0.004403 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.248481 B = 6357.840710 C = 6533.523012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.261 3.739 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.713 5.713 13 C 0.500 3.500 14 O -0.552 6.552 15 C -0.137 4.137 16 C -0.065 4.065 17 H 0.087 0.913 18 C -0.114 4.114 19 C -0.120 4.120 20 C 0.086 3.914 21 H 0.031 0.969 22 N -0.843 5.843 23 C -0.115 4.115 24 H 0.071 0.929 25 H 0.027 0.973 26 H 0.019 0.981 27 H 0.264 0.736 28 H 0.387 0.613 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.338 0.662 36 H 0.337 0.663 37 H 0.066 0.934 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 -4.634 17.265 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.159 3.841 3 H 0.072 0.928 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.361 5.361 13 C 0.285 3.715 14 O -0.431 6.431 15 C -0.177 4.177 16 C -0.084 4.084 17 H 0.105 0.895 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.025 4.025 21 H 0.049 0.951 22 N -0.373 5.373 23 C -0.153 4.153 24 H 0.090 0.910 25 H 0.046 0.954 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.219 0.781 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.085 0.915 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.044 -3.365 16.384 16.850 hybrid contribution 0.234 -1.533 -0.009 1.550 sum 2.279 -4.897 16.374 17.242 Atomic orbital electron populations 1.22000 0.99013 0.98441 1.00410 1.18714 0.90461 0.94581 0.80294 0.92761 1.21191 1.37078 1.08614 0.90550 0.92154 1.24895 0.95027 0.94619 0.99025 1.69985 1.43917 1.13744 1.24161 0.86535 0.78693 0.79959 0.82340 1.20459 1.21177 1.19920 1.46525 1.65425 1.13453 1.10719 1.20483 0.78630 0.87640 0.84779 1.90635 1.51178 1.16137 1.85185 1.21741 1.02428 0.99300 0.94260 1.21746 0.96974 0.97799 0.91860 0.89462 1.22362 0.96596 1.01559 0.94626 1.22239 0.95592 1.01053 0.96874 1.21968 0.92452 0.91990 0.96082 0.95101 1.58820 1.06684 1.25762 1.46059 1.22498 1.00386 0.98011 0.94428 0.91022 0.95395 0.96200 0.92596 0.78123 0.89687 0.89815 0.90162 0.92424 0.90987 0.92441 0.84980 0.84998 0.91522 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.36 37.16 0.35 -3.14 16 2 C 0.26 6.78 2.42 -69.08 -0.17 6.61 16 3 H 0.05 1.64 7.52 -51.93 -0.39 1.25 16 4 C -0.54 -14.45 8.66 -34.44 -0.30 -14.75 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 7 N -0.88 -25.45 12.16 55.43 0.67 -24.78 16 8 Si 0.90 20.86 29.55 -169.99 -5.02 15.83 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.71 -15.08 5.07 -54.93 -0.28 -15.36 16 13 C 0.50 10.01 7.60 -10.99 -0.08 9.93 16 14 O -0.55 -13.24 14.33 5.56 0.08 -13.16 16 15 C -0.14 -1.97 5.22 -27.88 -0.15 -2.11 16 16 C -0.06 -0.91 2.46 -88.62 -0.22 -1.13 16 17 H 0.09 1.45 7.97 -51.93 -0.41 1.04 16 18 C -0.11 -1.60 5.67 -25.07 -0.14 -1.74 16 19 C -0.12 -1.38 6.58 -25.61 -0.17 -1.55 16 20 C 0.09 0.88 4.03 -66.60 -0.27 0.62 16 21 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 22 N -0.84 -7.99 9.12 -3.72 -0.03 -8.02 16 23 C -0.12 -1.25 5.98 -25.06 -0.15 -1.40 16 24 H 0.07 1.92 6.83 -51.93 -0.35 1.57 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.39 7.04 8.53 -40.82 -0.35 6.70 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.03 8.05 -51.93 -0.42 0.62 16 31 H 0.08 1.36 7.20 -51.93 -0.37 0.99 16 32 H 0.06 0.77 7.98 -51.93 -0.41 0.35 16 33 H 0.07 0.88 7.92 -51.93 -0.41 0.47 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.34 2.67 9.06 -39.29 -0.36 2.31 16 36 H 0.34 2.65 8.92 -39.29 -0.35 2.29 16 37 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 38 H 0.07 0.70 7.94 -51.93 -0.41 0.29 16 LS Contribution 307.44 15.07 4.63 4.63 Total: -1.00 -31.11 307.44 -7.65 -38.76 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.32 Total: 8.99 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.39 Total: -6.90 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.36 Total: -48.16 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.11 -7.65 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393311873.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.702 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds