Wall clock time and date at job start Mon Mar 30 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46974 * 2 1 4 4 C 1.50695 * 109.46853 * 240.00492 * 2 1 3 5 5 H 1.08003 * 120.00404 * 245.45722 * 4 2 1 6 6 C 1.37884 * 120.00377 * 65.45728 * 4 2 1 7 7 N 1.31509 * 119.99696 * 9.55967 * 6 4 2 8 8 Si 1.86796 * 120.00110 * 189.55966 * 6 4 2 9 9 H 1.48503 * 109.47224 * 84.99503 * 8 6 4 10 10 H 1.48502 * 109.46979 * 204.99565 * 8 6 4 11 11 H 1.48504 * 109.47362 * 324.99189 * 8 6 4 12 12 N 1.46495 * 109.47391 * 120.00044 * 2 1 3 13 13 C 1.34772 * 120.00030 * 275.00112 * 12 2 1 14 14 O 1.21280 * 120.00286 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99646 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.46982 * 179.97438 * 15 13 12 17 17 H 1.08997 * 110.67822 * 305.70523 * 16 15 13 18 18 C 1.54886 * 110.75540 * 68.93860 * 16 15 13 19 19 C 1.54269 * 104.19726 * 156.44059 * 18 16 15 20 20 C 1.53870 * 106.60061 * 336.38985 * 19 18 16 21 21 H 1.08999 * 110.03055 * 240.72043 * 20 19 18 22 22 N 1.46896 * 110.03433 * 119.33196 * 20 19 18 23 23 C 1.54271 * 106.59448 * 359.97438 * 20 19 18 24 24 H 1.08993 * 109.47152 * 63.67585 * 1 2 3 25 25 H 1.09001 * 109.46857 * 183.67792 * 1 2 3 26 26 H 1.09004 * 109.46614 * 303.67564 * 1 2 3 27 27 H 0.96998 * 120.00358 * 180.02562 * 7 6 4 28 28 H 0.96998 * 119.99825 * 95.00082 * 12 2 1 29 29 H 1.09006 * 109.47197 * 60.00112 * 15 13 12 30 30 H 1.08995 * 109.47428 * 299.99932 * 15 13 12 31 31 H 1.09001 * 110.48559 * 275.12052 * 18 16 15 32 32 H 1.08998 * 110.49043 * 37.76325 * 18 16 15 33 33 H 1.09007 * 110.03295 * 95.67705 * 19 18 16 34 34 H 1.09002 * 110.03337 * 217.05149 * 19 18 16 35 35 H 1.00899 * 110.99856 * 61.45528 * 22 20 19 36 36 H 1.00903 * 111.00194 * 185.41277 * 22 20 19 37 37 H 1.08998 * 110.48735 * 264.92976 * 23 20 19 38 38 H 1.09001 * 110.48435 * 142.29011 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5786 -1.6370 -1.1340 6 6 1.7945 -0.1772 -2.4797 7 7 1.2992 1.0357 -2.5935 8 14 2.1758 -1.1778 -4.0102 9 1 1.0238 -2.0608 -4.3242 10 1 2.4225 -0.2611 -5.1522 11 1 3.3844 -2.0071 -3.7712 12 7 2.0185 -0.6906 1.1961 13 6 2.1472 -0.0183 2.3570 14 8 1.8592 1.1586 2.4115 15 6 2.6491 -0.7289 3.5876 16 6 2.7013 0.2543 4.7586 17 1 3.2892 1.1339 4.4968 18 6 1.2728 0.6602 5.1987 19 6 1.4415 1.1078 6.6653 20 6 2.7109 0.4163 7.1928 21 1 2.4619 -0.2287 8.0354 22 7 3.6982 1.4230 7.6046 23 6 3.2688 -0.4280 6.0284 24 1 -0.3633 0.4557 -0.9210 25 1 -0.3633 -1.0256 0.0659 26 1 -0.3633 0.5699 0.8553 27 1 1.1315 1.4107 -3.4722 28 1 2.2492 -1.6317 1.1525 29 1 3.6482 -1.1214 3.3984 30 1 1.9762 -1.5507 3.8324 31 1 0.9053 1.4849 4.5880 32 1 0.5973 -0.1929 5.1356 33 1 1.5584 2.1905 6.7142 34 1 0.5761 0.7993 7.2519 35 1 3.3384 1.9978 8.3517 36 1 4.5690 0.9880 7.8702 37 1 2.9157 -1.4567 6.0996 38 1 4.3584 -0.3972 6.0228 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393311873.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:32 Heat of formation + Delta-G solvation = -88.484792 kcal Electronic energy + Delta-G solvation = -17395.990717 eV Core-core repulsion = 14656.932470 eV Total energy + Delta-G solvation = -2739.058247 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.75620 -39.11352 -36.64230 -34.30313 -34.14639 -31.69067 -30.45792 -28.56568 -27.30166 -26.01210 -23.09147 -21.32812 -20.78969 -20.58639 -18.84066 -17.46620 -17.21668 -16.82771 -16.25087 -16.01933 -15.92798 -15.59282 -14.92168 -14.47381 -14.22695 -14.01713 -13.75983 -13.11053 -12.94762 -12.76306 -12.69354 -12.34643 -12.32873 -12.13304 -12.00099 -11.92945 -11.86719 -11.55559 -11.36230 -11.14770 -10.58848 -10.46697 -9.68185 -9.47773 -8.20017 -6.33798 1.44591 1.46064 1.55790 1.95108 2.37794 2.72868 3.12020 3.66184 3.70706 3.71152 4.02361 4.19113 4.42387 4.49916 4.58262 4.66485 4.72429 4.80617 4.83309 4.89320 4.97030 5.04344 5.05681 5.13864 5.18075 5.27912 5.43183 5.48189 5.61024 5.64049 5.64789 5.94440 6.05696 6.39984 6.69630 6.75867 7.06368 7.33806 7.67497 8.89355 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057689 B = 0.004403 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.248481 B = 6357.840710 C = 6533.523012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.266 3.734 3 H -0.002 1.002 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.971 3.029 9 H -0.269 1.269 10 H -0.288 1.288 11 H -0.262 1.262 12 N -0.710 5.710 13 C 0.492 3.508 14 O -0.599 6.599 15 C -0.123 4.123 16 C -0.067 4.067 17 H 0.051 0.949 18 C -0.116 4.116 19 C -0.117 4.117 20 C 0.089 3.911 21 H 0.054 0.946 22 N -0.857 5.857 23 C -0.106 4.106 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.014 0.986 27 H 0.265 0.735 28 H 0.405 0.595 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.346 0.654 36 H 0.348 0.652 37 H 0.090 0.910 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 -7.559 18.498 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.162 3.838 3 H 0.016 0.984 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.795 3.205 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.186 1.186 12 N -0.359 5.359 13 C 0.280 3.720 14 O -0.481 6.481 15 C -0.162 4.162 16 C -0.086 4.086 17 H 0.069 0.931 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.022 4.022 21 H 0.071 0.929 22 N -0.390 5.390 23 C -0.143 4.143 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.240 0.760 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.109 0.891 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.858 -6.330 17.652 18.969 hybrid contribution -0.018 -0.536 -0.363 0.648 sum 2.840 -6.866 17.289 18.818 Atomic orbital electron populations 1.21812 0.98509 0.99253 0.98851 1.18313 0.90843 0.92213 0.82388 0.98415 1.21543 1.37113 1.09001 0.90987 0.90745 1.25845 0.94769 0.95476 1.02519 1.70143 1.45186 1.15617 1.24922 0.85378 0.79043 0.78261 0.77780 1.19465 1.21419 1.18611 1.46311 1.65582 1.14211 1.09840 1.21575 0.77324 0.87263 0.85857 1.90626 1.52912 1.18587 1.85964 1.21755 1.04173 0.99413 0.90886 1.21698 0.96565 0.96914 0.93450 0.93077 1.22329 0.96874 1.00447 0.95765 1.22215 0.97459 1.00378 0.95413 1.21927 0.91646 0.92104 0.96540 0.92850 1.58775 1.07236 1.26098 1.46862 1.22471 1.00744 0.98864 0.92248 0.93477 0.93279 0.96692 0.92612 0.76038 0.87097 0.86511 0.94434 0.91356 0.92462 0.90688 0.84046 0.83802 0.89144 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 9.36 71.98 0.67 -5.72 16 2 C 0.27 14.16 2.42 44.25 0.11 14.27 16 3 H 0.00 -0.14 7.52 -2.39 -0.02 -0.15 16 4 C -0.55 -29.54 8.66 25.60 0.22 -29.32 16 5 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 6 C 0.01 0.77 5.17 84.66 0.44 1.21 16 7 N -0.92 -54.61 12.16 21.45 0.26 -54.35 16 8 Si 0.97 42.46 29.55 68.60 2.03 44.49 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 12 N -0.71 -29.82 5.07 -446.10 -2.26 -32.08 16 13 C 0.49 19.80 7.60 87.66 0.67 20.46 16 14 O -0.60 -30.15 14.33 -3.03 -0.04 -30.20 16 15 C -0.12 -3.25 5.22 29.85 0.16 -3.10 16 16 C -0.07 -1.81 2.46 -9.50 -0.02 -1.84 16 17 H 0.05 1.74 7.97 -2.39 -0.02 1.73 16 18 C -0.12 -3.26 5.67 31.67 0.18 -3.08 16 19 C -0.12 -2.56 6.58 31.32 0.21 -2.36 16 20 C 0.09 1.58 4.03 45.64 0.18 1.76 16 21 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 22 N -0.86 -14.61 9.12 -165.68 -1.51 -16.12 16 23 C -0.11 -1.94 5.98 31.68 0.19 -1.75 16 24 H 0.05 2.60 6.83 -2.39 -0.02 2.59 16 25 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.01 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 28 H 0.40 13.98 8.53 -92.71 -0.79 13.19 16 29 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.12 2.40 8.05 -2.39 -0.02 2.38 16 31 H 0.04 1.35 7.20 -2.39 -0.02 1.33 16 32 H 0.07 1.73 7.98 -2.39 -0.02 1.71 16 33 H 0.06 1.41 7.92 -2.38 -0.02 1.39 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.35 4.87 9.06 -89.69 -0.81 4.06 16 36 H 0.35 4.63 8.92 -89.69 -0.80 3.83 16 37 H 0.09 1.29 8.05 -2.39 -0.02 1.27 16 38 H 0.07 1.30 7.94 -2.39 -0.02 1.28 16 Total: -1.00 -70.75 307.44 0.13 -70.62 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -1.34 Total: 27.09 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 3.00 Total: -9.45 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -3.51 Total: -102.55 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.04 Total: -30.20 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -70.75 0.13 -70.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393311873.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.865 kcal (2) G-P(sol) polarization free energy of solvation -70.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds