Wall clock time and date at job start Mon Mar 30 2020 03:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47416 * 2 1 4 4 C 1.50702 * 109.46916 * 240.00460 * 2 1 3 5 5 H 1.08001 * 119.99976 * 240.00044 * 4 2 1 6 6 C 1.37873 * 120.00027 * 60.00365 * 4 2 1 7 7 N 1.31521 * 120.00231 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 120.00033 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47124 * 270.00225 * 8 6 4 10 10 H 1.48497 * 109.46954 * 30.00419 * 8 6 4 11 11 H 1.48504 * 109.46985 * 149.99883 * 8 6 4 12 12 N 1.46899 * 109.47079 * 120.01009 * 2 1 3 13 13 C 1.46894 * 110.99739 * 274.31792 * 12 2 1 14 14 H 1.09005 * 109.47259 * 32.99537 * 13 12 2 15 15 C 1.53000 * 109.47423 * 152.99472 * 13 12 2 16 16 C 1.53000 * 109.47649 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46841 * 300.00547 * 16 15 13 18 18 C 1.52991 * 109.47712 * 59.99635 * 17 16 15 19 19 H 1.09005 * 109.46966 * 60.00060 * 18 17 16 20 20 C 1.50693 * 109.47440 * 179.97438 * 18 17 16 21 21 N 1.34781 * 120.00396 * 300.00047 * 20 18 17 22 22 O 1.21284 * 120.00042 * 120.00210 * 20 18 17 23 23 C 1.53000 * 109.47265 * 300.00105 * 18 17 16 24 24 H 1.08996 * 109.46689 * 303.71979 * 1 2 3 25 25 H 1.09006 * 109.46575 * 63.71800 * 1 2 3 26 26 H 1.09000 * 109.47179 * 183.71652 * 1 2 3 27 27 H 0.97002 * 119.99881 * 179.97438 * 7 6 4 28 28 H 1.00905 * 111.00125 * 150.36573 * 12 2 1 29 29 H 1.08998 * 109.47232 * 300.00051 * 15 13 12 30 30 H 1.09005 * 109.46849 * 59.99814 * 15 13 12 31 31 H 1.09000 * 109.46798 * 59.99649 * 16 15 13 32 32 H 1.08992 * 109.47279 * 179.97438 * 16 15 13 33 33 H 1.09005 * 109.46693 * 179.97438 * 17 16 15 34 34 H 1.09005 * 109.47051 * 299.98866 * 17 16 15 35 35 H 0.97000 * 119.99318 * 359.97438 * 21 20 18 36 36 H 0.96998 * 120.00393 * 179.97438 * 21 20 18 37 37 H 1.09005 * 109.47091 * 299.99878 * 23 18 17 38 38 H 1.08995 * 109.47560 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2391 -2.4827 7 7 2.1380 -0.8587 -3.5567 8 14 0.6248 1.2794 -2.6540 9 1 -0.8028 0.8730 -2.6997 10 1 0.8472 2.1767 -1.4919 11 1 0.9760 1.9955 -3.9066 12 7 2.0197 -0.6927 1.1993 13 6 2.0978 0.2261 2.3428 14 1 1.3008 0.9661 2.2694 15 6 1.9417 -0.5642 3.6436 16 6 2.0237 0.3927 4.8347 17 6 3.3800 1.1007 4.8276 18 6 3.5360 1.8910 3.5269 19 1 2.7393 2.6313 3.4537 20 6 4.8716 2.5889 3.5202 21 7 5.1690 3.4842 4.4828 22 8 5.6790 2.3449 2.6486 23 6 3.4541 0.9342 2.3358 24 1 -0.3632 0.5705 0.8548 25 1 -0.3633 0.4551 -0.9215 26 1 -0.3633 -1.0255 0.0666 27 1 1.9034 -0.5274 -4.4377 28 1 2.9122 -1.1301 1.0252 29 1 0.9757 -1.0689 3.6485 30 1 2.7387 -1.3042 3.7170 31 1 1.2270 1.1330 4.7615 32 1 1.9121 -0.1703 5.7613 33 1 3.4382 1.7827 5.6759 34 1 4.1767 0.3604 4.9009 35 1 4.5232 3.6796 5.1796 36 1 6.0289 3.9331 4.4787 37 1 4.2508 0.1938 2.4089 38 1 3.5648 1.4972 1.4091 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393600422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:57 Heat of formation + Delta-G solvation = -58.807321 kcal Electronic energy + Delta-G solvation = -17934.895870 eV Core-core repulsion = 15197.124535 eV Total energy + Delta-G solvation = -2737.771335 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.08199 -37.92299 -35.32469 -33.74203 -32.33885 -30.81585 -30.29839 -27.09517 -24.97830 -23.78020 -22.09303 -20.36674 -19.81137 -19.56611 -17.51989 -16.87914 -16.41588 -15.30843 -15.25090 -14.68607 -14.17943 -13.97030 -13.65173 -13.26535 -13.02929 -12.78484 -12.42772 -12.32636 -12.07254 -11.41149 -11.21053 -11.00696 -10.91906 -10.74633 -10.44530 -10.40450 -10.05291 -9.95281 -9.77883 -9.72795 -9.40925 -8.97543 -8.56543 -7.42796 -6.05070 -4.04305 2.63850 3.29444 3.39094 3.41799 3.46717 4.42504 4.62006 4.68489 4.76341 5.09090 5.26345 5.28572 5.31142 5.43234 5.50914 5.59605 5.71402 5.84648 5.99209 6.06638 6.13603 6.32326 6.39787 6.41098 6.54249 6.61208 6.66211 6.73227 6.79429 6.89801 7.23106 7.44484 7.62895 8.01356 8.23316 8.41140 8.67325 9.00350 9.57410 11.08097 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026657 B = 0.006683 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.138536 B = 4188.908829 C = 4688.028674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.181 3.819 3 H 0.002 0.998 4 C -0.518 4.518 5 H 0.078 0.922 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.891 3.109 9 H -0.279 1.279 10 H -0.269 1.269 11 H -0.298 1.298 12 N -0.673 5.673 13 C 0.087 3.913 14 H 0.068 0.932 15 C -0.108 4.108 16 C -0.116 4.116 17 C -0.107 4.107 18 C -0.104 4.104 19 H 0.095 0.905 20 C 0.518 3.482 21 N -0.861 5.861 22 O -0.536 6.536 23 C -0.127 4.127 24 H 0.023 0.977 25 H 0.037 0.963 26 H 0.057 0.943 27 H 0.264 0.736 28 H 0.341 0.659 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.399 0.601 36 H 0.397 0.603 37 H 0.070 0.930 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 7.650 19.733 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.072 3.928 3 H 0.019 0.981 4 C -0.556 4.556 5 H 0.096 0.904 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.194 1.194 11 H -0.226 1.226 12 N -0.303 5.303 13 C -0.024 4.024 14 H 0.087 0.913 15 C -0.146 4.146 16 C -0.154 4.154 17 C -0.145 4.145 18 C -0.126 4.126 19 H 0.113 0.887 20 C 0.303 3.697 21 N -0.425 5.425 22 O -0.411 6.411 23 C -0.167 4.167 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.159 0.841 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.227 0.773 36 H 0.228 0.772 37 H 0.088 0.912 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.349 7.089 19.021 20.302 hybrid contribution 0.232 1.752 -0.152 1.774 sum 0.581 8.841 18.868 20.845 Atomic orbital electron populations 1.22085 0.98862 1.00856 0.97670 1.19529 0.91543 0.93126 0.88572 0.98067 1.21123 1.32128 1.13706 0.88658 0.90376 1.24940 0.95752 0.96663 0.95791 1.69897 1.45625 1.40312 0.97894 0.86805 0.80590 0.83669 0.76786 1.20563 1.19393 1.22589 1.60645 1.33334 1.31065 1.05219 1.21589 0.94876 0.93818 0.92146 0.91332 1.21544 1.02437 0.97628 0.93001 1.21527 0.96236 0.98873 0.98801 1.21521 0.99035 0.99086 0.94835 1.21360 0.94296 0.98577 0.98398 0.88683 1.20887 0.89508 0.78711 0.80598 1.43938 1.21764 1.45835 1.30929 1.90773 1.50475 1.63435 1.36438 1.22171 0.99476 0.98405 0.96632 0.95773 0.94476 0.92385 0.92643 0.84052 0.91317 0.92082 0.91942 0.91778 0.92061 0.91402 0.77290 0.77239 0.91163 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.89 37.16 0.33 -2.77 16 2 C 0.18 4.36 2.00 -68.86 -0.14 4.22 16 3 H 0.00 0.04 6.32 -51.93 -0.33 -0.28 16 4 C -0.52 -14.80 9.17 -34.44 -0.32 -15.11 16 5 H 0.08 2.41 7.85 -52.49 -0.41 1.99 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 8 Si 0.89 22.59 24.40 -169.99 -4.15 18.44 16 9 H -0.28 -6.86 6.84 56.52 0.39 -6.47 16 10 H -0.27 -6.57 6.53 56.52 0.37 -6.20 16 11 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 12 N -0.67 -13.75 6.06 -100.95 -0.61 -14.36 16 13 C 0.09 1.42 2.27 -67.71 -0.15 1.26 16 14 H 0.07 1.15 7.19 -51.93 -0.37 0.78 16 15 C -0.11 -1.42 5.53 -26.73 -0.15 -1.57 16 16 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 17 C -0.11 -1.01 5.10 -26.74 -0.14 -1.15 16 18 C -0.10 -1.26 2.52 -91.78 -0.23 -1.49 16 19 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 20 C 0.52 6.82 7.43 -10.99 -0.08 6.73 16 21 N -0.86 -7.10 8.77 31.22 0.27 -6.82 16 22 O -0.54 -9.82 16.82 5.55 0.09 -9.73 16 23 C -0.13 -2.05 3.73 -26.73 -0.10 -2.15 16 24 H 0.02 0.47 7.55 -51.93 -0.39 0.08 16 25 H 0.04 0.87 3.22 -51.93 -0.17 0.71 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.34 7.16 7.91 -39.29 -0.31 6.85 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.42 7.56 -51.93 -0.39 0.02 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 2.00 8.25 -40.82 -0.34 1.66 16 36 H 0.40 2.91 8.93 -40.82 -0.36 2.55 16 37 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 38 H 0.07 1.39 7.54 -51.93 -0.39 0.99 16 LS Contribution 294.21 15.07 4.43 4.43 Total: -1.00 -33.56 294.21 -6.45 -40.01 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.03 Total: 6.62 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -1.23 Total: -11.35 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.44 Total: -48.42 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.15 Total: 18.44 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.56 -6.45 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393600422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.801 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds