Wall clock time and date at job start Mon Mar 30 2020 03:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47416 * 2 1 4 4 C 1.50702 * 109.46916 * 240.00460 * 2 1 3 5 5 H 1.08001 * 119.99976 * 240.00044 * 4 2 1 6 6 C 1.37873 * 120.00027 * 60.00365 * 4 2 1 7 7 N 1.31521 * 120.00231 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 120.00033 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47124 * 270.00225 * 8 6 4 10 10 H 1.48497 * 109.46954 * 30.00419 * 8 6 4 11 11 H 1.48504 * 109.46985 * 149.99883 * 8 6 4 12 12 N 1.46899 * 109.47079 * 120.01009 * 2 1 3 13 13 C 1.46894 * 110.99739 * 274.31792 * 12 2 1 14 14 H 1.09005 * 109.47259 * 32.99537 * 13 12 2 15 15 C 1.53000 * 109.47423 * 152.99472 * 13 12 2 16 16 C 1.53000 * 109.47649 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46841 * 300.00547 * 16 15 13 18 18 C 1.52991 * 109.47712 * 59.99635 * 17 16 15 19 19 H 1.09005 * 109.46966 * 60.00060 * 18 17 16 20 20 C 1.50693 * 109.47440 * 179.97438 * 18 17 16 21 21 N 1.34781 * 120.00396 * 300.00047 * 20 18 17 22 22 O 1.21284 * 120.00042 * 120.00210 * 20 18 17 23 23 C 1.53000 * 109.47265 * 300.00105 * 18 17 16 24 24 H 1.08996 * 109.46689 * 303.71979 * 1 2 3 25 25 H 1.09006 * 109.46575 * 63.71800 * 1 2 3 26 26 H 1.09000 * 109.47179 * 183.71652 * 1 2 3 27 27 H 0.97002 * 119.99881 * 179.97438 * 7 6 4 28 28 H 1.00905 * 111.00125 * 150.36573 * 12 2 1 29 29 H 1.08998 * 109.47232 * 300.00051 * 15 13 12 30 30 H 1.09005 * 109.46849 * 59.99814 * 15 13 12 31 31 H 1.09000 * 109.46798 * 59.99649 * 16 15 13 32 32 H 1.08992 * 109.47279 * 179.97438 * 16 15 13 33 33 H 1.09005 * 109.46693 * 179.97438 * 17 16 15 34 34 H 1.09005 * 109.47051 * 299.98866 * 17 16 15 35 35 H 0.97000 * 119.99318 * 359.97438 * 21 20 18 36 36 H 0.96998 * 120.00393 * 179.97438 * 21 20 18 37 37 H 1.09005 * 109.47091 * 299.99878 * 23 18 17 38 38 H 1.08995 * 109.47560 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2391 -2.4827 7 7 2.1380 -0.8587 -3.5567 8 14 0.6248 1.2794 -2.6540 9 1 -0.8028 0.8730 -2.6997 10 1 0.8472 2.1767 -1.4919 11 1 0.9760 1.9955 -3.9066 12 7 2.0197 -0.6927 1.1993 13 6 2.0978 0.2261 2.3428 14 1 1.3008 0.9661 2.2694 15 6 1.9417 -0.5642 3.6436 16 6 2.0237 0.3927 4.8347 17 6 3.3800 1.1007 4.8276 18 6 3.5360 1.8910 3.5269 19 1 2.7393 2.6313 3.4537 20 6 4.8716 2.5889 3.5202 21 7 5.1690 3.4842 4.4828 22 8 5.6790 2.3449 2.6486 23 6 3.4541 0.9342 2.3358 24 1 -0.3632 0.5705 0.8548 25 1 -0.3633 0.4551 -0.9215 26 1 -0.3633 -1.0255 0.0666 27 1 1.9034 -0.5274 -4.4377 28 1 2.9122 -1.1301 1.0252 29 1 0.9757 -1.0689 3.6485 30 1 2.7387 -1.3042 3.7170 31 1 1.2270 1.1330 4.7615 32 1 1.9121 -0.1703 5.7613 33 1 3.4382 1.7827 5.6759 34 1 4.1767 0.3604 4.9009 35 1 4.5232 3.6796 5.1796 36 1 6.0289 3.9331 4.4787 37 1 4.2508 0.1938 2.4089 38 1 3.5648 1.4972 1.4091 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393600422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:57 Heat of formation + Delta-G solvation = -86.962947 kcal Electronic energy + Delta-G solvation = -17936.116789 eV Core-core repulsion = 15197.124535 eV Total energy + Delta-G solvation = -2738.992254 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.15273 -39.18623 -36.89813 -34.82358 -34.22840 -31.97771 -31.78042 -28.54176 -27.09493 -24.82993 -23.28982 -21.67017 -21.34289 -20.66594 -18.89817 -18.30615 -17.66685 -17.14123 -16.34928 -15.81436 -15.67761 -15.18384 -15.13833 -14.65419 -14.55314 -14.32295 -14.07048 -13.57652 -13.44488 -12.99140 -12.81439 -12.59250 -12.22331 -12.10526 -11.99351 -11.60417 -11.56907 -11.40525 -11.17691 -10.94413 -10.84993 -10.75713 -10.64809 -9.09969 -8.33184 -6.37520 1.27008 1.32804 1.43251 1.63127 2.28878 2.60272 3.01967 3.41528 3.75140 3.84672 3.88922 4.22085 4.36487 4.44013 4.49524 4.51797 4.60251 4.61930 4.70678 4.75572 4.89996 4.98072 5.12729 5.16067 5.18586 5.23641 5.35671 5.48078 5.50556 5.57738 5.66036 5.90991 6.02308 6.47729 6.49638 6.66670 6.82680 7.28946 7.37443 8.83685 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026657 B = 0.006683 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.138536 B = 4188.908829 C = 4688.028674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.186 3.814 3 H -0.008 1.008 4 C -0.526 4.526 5 H 0.036 0.964 6 C 0.011 3.989 7 N -0.948 5.948 8 Si 0.955 3.045 9 H -0.260 1.260 10 H -0.252 1.252 11 H -0.298 1.298 12 N -0.676 5.676 13 C 0.087 3.913 14 H 0.073 0.927 15 C -0.103 4.103 16 C -0.109 4.109 17 C -0.101 4.101 18 C -0.098 4.098 19 H 0.118 0.882 20 C 0.514 3.486 21 N -0.832 5.832 22 O -0.600 6.600 23 C -0.121 4.121 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.053 0.947 27 H 0.266 0.734 28 H 0.331 0.669 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.420 0.580 36 H 0.405 0.595 37 H 0.049 0.951 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 9.803 23.117 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.077 3.923 3 H 0.009 0.991 4 C -0.564 4.564 5 H 0.054 0.946 6 C -0.187 4.187 7 N -0.588 5.588 8 Si 0.781 3.219 9 H -0.186 1.186 10 H -0.176 1.176 11 H -0.226 1.226 12 N -0.305 5.305 13 C -0.023 4.023 14 H 0.091 0.909 15 C -0.141 4.141 16 C -0.146 4.146 17 C -0.139 4.139 18 C -0.120 4.120 19 H 0.135 0.865 20 C 0.300 3.700 21 N -0.396 5.396 22 O -0.481 6.481 23 C -0.161 4.161 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.148 0.852 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.252 0.748 36 H 0.237 0.763 37 H 0.068 0.932 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.479 9.272 22.498 24.378 hybrid contribution 0.891 1.021 -1.153 1.780 sum -0.588 10.293 21.344 23.704 Atomic orbital electron populations 1.21976 0.96964 1.01229 0.98811 1.19362 0.92905 0.91973 0.88099 0.99084 1.21454 1.31316 1.12605 0.91025 0.94574 1.25856 0.97372 1.00135 0.95310 1.70052 1.47621 1.42534 0.98598 0.85765 0.79314 0.79655 0.77128 1.18603 1.17646 1.22617 1.60689 1.32806 1.31908 1.05102 1.21750 0.94888 0.93708 0.91994 0.90905 1.21510 1.02041 0.97993 0.92599 1.21512 0.96736 0.98577 0.97817 1.21550 0.98624 0.99318 0.94364 1.21331 0.94455 0.98375 0.97866 0.86461 1.21093 0.89275 0.79087 0.80525 1.43672 1.22488 1.43711 1.29776 1.90759 1.52338 1.65785 1.39212 1.21990 0.98698 0.98441 0.96968 0.92255 0.95187 0.92808 0.92469 0.85186 0.91468 0.92852 0.90376 0.89303 0.87897 0.92406 0.74835 0.76330 0.93169 0.95176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.89 71.98 0.64 -5.09 16 2 C 0.19 9.03 2.00 44.17 0.09 9.11 16 3 H -0.01 -0.42 6.32 -2.39 -0.02 -0.43 16 4 C -0.53 -31.28 9.17 25.60 0.23 -31.05 16 5 H 0.04 2.38 7.85 -2.91 -0.02 2.36 16 6 C 0.01 0.65 5.45 84.65 0.46 1.11 16 7 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 8 Si 0.95 46.65 24.40 68.60 1.67 48.33 16 9 H -0.26 -11.91 6.84 99.48 0.68 -11.23 16 10 H -0.25 -11.56 6.53 99.48 0.65 -10.91 16 11 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 12 N -0.68 -28.11 6.06 -473.31 -2.87 -30.98 16 13 C 0.09 2.75 2.27 44.92 0.10 2.85 16 14 H 0.07 2.26 7.19 -2.38 -0.02 2.24 16 15 C -0.10 -2.49 5.53 30.59 0.17 -2.32 16 16 C -0.11 -1.65 5.92 30.59 0.18 -1.47 16 17 C -0.10 -1.51 5.10 30.59 0.16 -1.35 16 18 C -0.10 -2.15 2.52 -11.54 -0.03 -2.18 16 19 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 20 C 0.51 12.81 7.43 87.65 0.65 13.47 16 21 N -0.83 -11.15 8.77 -173.53 -1.52 -12.67 16 22 O -0.60 -22.52 16.82 -3.04 -0.05 -22.57 16 23 C -0.12 -3.95 3.73 30.60 0.11 -3.84 16 24 H 0.06 2.14 7.55 -2.39 -0.02 2.12 16 25 H 0.03 1.33 3.22 -2.38 -0.01 1.33 16 26 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 28 H 0.33 14.74 7.91 -89.69 -0.71 14.03 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 0.76 7.56 -2.38 -0.02 0.74 16 34 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.42 2.23 8.25 -92.71 -0.76 1.47 16 36 H 0.41 4.86 8.93 -92.71 -0.83 4.03 16 37 H 0.05 1.79 8.08 -2.38 -0.02 1.78 16 38 H 0.03 1.20 7.54 -2.39 -0.02 1.19 16 Total: -1.00 -77.98 294.21 -1.01 -78.99 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -1.31 Total: 20.61 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 2.77 Total: -20.76 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -4.09 Total: -104.59 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.67 Total: 48.33 kcal Total: -77.98 -1.01 -78.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393600422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.977 kcal (2) G-P(sol) polarization free energy of solvation -77.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds