Wall clock time and date at job start Mon Mar 30 2020 03:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47154 * 89.99418 * 8 6 4 10 10 H 1.48493 * 109.47010 * 209.99942 * 8 6 4 11 11 H 1.48502 * 109.46736 * 329.99638 * 8 6 4 12 12 N 1.46895 * 109.47514 * 120.00767 * 2 1 3 13 13 C 1.46902 * 110.99778 * 274.99856 * 12 2 1 14 14 H 1.09001 * 109.46970 * 34.99965 * 13 12 2 15 15 C 1.52999 * 109.47223 * 274.99608 * 13 12 2 16 16 C 1.52999 * 109.47168 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47320 * 60.00057 * 16 15 13 18 18 C 1.52999 * 109.47286 * 300.00255 * 17 16 15 19 19 H 1.09001 * 109.47125 * 299.99813 * 18 17 16 20 20 C 1.50695 * 109.47261 * 179.97438 * 18 17 16 21 21 N 1.34777 * 120.00290 * 60.00144 * 20 18 17 22 22 O 1.21282 * 120.00439 * 240.00088 * 20 18 17 23 23 C 1.53002 * 109.46877 * 155.00030 * 13 12 2 24 24 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 25 25 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 27 27 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 28 28 H 1.00896 * 111.00023 * 38.95266 * 12 2 1 29 29 H 1.08993 * 109.47547 * 300.00371 * 15 13 12 30 30 H 1.08999 * 109.46672 * 60.00157 * 15 13 12 31 31 H 1.09002 * 109.47247 * 180.02562 * 16 15 13 32 32 H 1.09001 * 109.46966 * 300.00320 * 16 15 13 33 33 H 1.09006 * 109.46534 * 59.99923 * 17 16 15 34 34 H 1.08998 * 109.47458 * 180.02562 * 17 16 15 35 35 H 0.97002 * 119.99401 * 359.97438 * 21 20 18 36 36 H 0.96998 * 120.00543 * 180.02562 * 21 20 18 37 37 H 1.09003 * 109.47283 * 299.99526 * 23 13 12 38 38 H 1.09001 * 109.47373 * 60.00182 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 1.3411 -2.1690 -4.4082 10 1 2.4753 -0.1452 -5.1142 11 1 3.6277 -1.7556 -3.7145 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 1 1.2577 0.9327 2.2907 15 6 3.4112 0.9807 2.3224 16 6 3.4769 1.9332 3.5179 17 6 3.3718 1.1303 4.8160 18 6 2.0432 0.3720 4.8406 19 1 1.2183 1.0823 4.7849 20 6 1.9399 -0.4193 6.1189 21 7 1.9753 0.2139 7.3082 22 8 1.8249 -1.6259 6.0777 23 6 1.9772 -0.5801 3.6452 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 0.6955 1.1524 -3.4842 28 1 1.4497 -1.4980 1.4098 29 1 4.2360 0.2704 2.3784 30 1 3.4862 1.5523 1.3973 31 1 4.4233 2.4737 3.5002 32 1 2.6520 2.6435 3.4622 33 1 4.1967 0.4199 4.8716 34 1 3.4181 1.8089 5.6678 35 1 2.0676 1.1789 7.3412 36 1 1.9092 -0.2954 8.1310 37 1 1.0306 -1.1203 3.6628 38 1 2.8021 -1.2904 3.7014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393600423.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:59 Heat of formation + Delta-G solvation = -65.930271 kcal Electronic energy + Delta-G solvation = -17747.234559 eV Core-core repulsion = 15009.154350 eV Total energy + Delta-G solvation = -2738.080209 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.06458 -37.82216 -35.17878 -33.76404 -32.34444 -30.73497 -29.68585 -26.46240 -25.07111 -23.80855 -21.85561 -20.67033 -19.61781 -19.44926 -17.47983 -16.76668 -16.07423 -15.24245 -14.76266 -14.68486 -14.28577 -14.07970 -13.54183 -13.43273 -12.78611 -12.48840 -12.25692 -11.70292 -11.50614 -11.31520 -10.98939 -10.91435 -10.77236 -10.68918 -10.37198 -10.24238 -10.11842 -10.00340 -9.82335 -9.79023 -9.50298 -8.90059 -8.30975 -7.15086 -5.93492 -3.96143 2.60025 3.36180 3.42242 3.44057 3.47621 4.47773 4.67289 4.74133 4.81680 5.21936 5.36379 5.37871 5.42935 5.57001 5.64658 5.70518 5.77076 5.94531 6.10072 6.20075 6.31113 6.47105 6.54350 6.64609 6.74586 6.75247 6.87106 6.90414 7.18267 7.20123 7.45894 7.80253 7.96178 8.19164 8.35452 8.63001 8.70871 9.11728 9.69176 11.13494 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043417 B = 0.005082 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.759383 B = 5508.069136 C = 5687.348916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.090 3.910 14 H 0.034 0.966 15 C -0.107 4.107 16 C -0.117 4.117 17 C -0.106 4.106 18 C -0.105 4.105 19 H 0.096 0.904 20 C 0.521 3.479 21 N -0.860 5.860 22 O -0.541 6.541 23 C -0.099 4.099 24 H 0.088 0.912 25 H 0.027 0.973 26 H 0.004 0.996 27 H 0.258 0.742 28 H 0.326 0.674 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.400 0.600 36 H 0.397 0.603 37 H 0.063 0.937 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.440 4.119 16.946 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.311 5.311 13 C -0.021 4.021 14 H 0.052 0.948 15 C -0.146 4.146 16 C -0.155 4.155 17 C -0.144 4.144 18 C -0.127 4.127 19 H 0.114 0.886 20 C 0.306 3.694 21 N -0.424 5.424 22 O -0.417 6.417 23 C -0.137 4.137 24 H 0.107 0.893 25 H 0.046 0.954 26 H 0.023 0.977 27 H 0.068 0.932 28 H 0.144 0.856 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.228 0.772 37 H 0.082 0.918 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.964 3.533 16.386 17.023 hybrid contribution -0.795 0.034 -0.248 0.834 sum 2.169 3.567 16.138 16.669 Atomic orbital electron populations 1.22445 1.00926 0.99165 1.00358 1.19192 0.89385 0.94422 0.86600 0.94803 1.21188 1.29876 1.12374 0.89657 0.91986 1.24943 0.95401 0.95237 0.98996 1.69885 1.37292 1.23536 1.23208 0.86526 0.79260 0.79238 0.82540 1.20900 1.21444 1.19888 1.60804 1.58147 1.08879 1.03243 1.21397 0.96285 0.94333 0.90043 0.94805 1.21541 0.98130 0.97729 0.97160 1.21548 1.01681 0.98007 0.94298 1.21521 0.95799 0.98614 0.98465 1.21345 1.00283 0.98448 0.92617 0.88634 1.20859 0.74481 0.88253 0.85782 1.43936 1.78130 1.11907 1.08393 1.90744 1.48580 1.14724 1.87608 1.21531 1.03137 0.97092 0.91941 0.89304 0.95405 0.97740 0.93179 0.85639 0.91627 0.91400 0.91792 0.92067 0.91349 0.92135 0.77173 0.77239 0.91786 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.92 37.16 0.33 -3.81 16 2 C 0.21 5.34 2.39 -68.87 -0.16 5.18 16 3 H 0.03 0.93 7.11 -51.93 -0.37 0.56 16 4 C -0.49 -13.77 8.84 -34.44 -0.30 -14.08 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.90 11.30 55.43 0.63 -25.27 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.68 -14.64 6.04 -100.95 -0.61 -15.25 16 13 C 0.09 1.59 2.31 -67.71 -0.16 1.43 16 14 H 0.03 0.63 7.11 -51.93 -0.37 0.26 16 15 C -0.11 -1.74 5.41 -26.73 -0.14 -1.88 16 16 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 17 C -0.11 -1.10 5.10 -26.73 -0.14 -1.23 16 18 C -0.11 -1.25 2.53 -91.80 -0.23 -1.48 16 19 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 20 C 0.52 6.43 7.42 -10.99 -0.08 6.35 16 21 N -0.86 -6.62 8.77 31.22 0.27 -6.35 16 22 O -0.54 -9.15 16.82 5.56 0.09 -9.06 16 23 C -0.10 -1.52 3.76 -26.75 -0.10 -1.62 16 24 H 0.09 2.40 6.05 -51.93 -0.31 2.08 16 25 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 26 H 0.00 0.08 7.43 -51.93 -0.39 -0.30 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.33 6.86 8.09 -39.29 -0.32 6.54 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.25 7.43 -51.93 -0.39 0.87 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 35 H 0.40 1.91 8.25 -40.82 -0.34 1.57 16 36 H 0.40 2.64 8.93 -40.82 -0.36 2.27 16 37 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 38 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 LS Contribution 300.77 15.07 4.53 4.53 Total: -1.00 -31.71 300.77 -7.50 -39.22 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.16 Total: 6.72 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -1.24 Total: -11.28 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.29 Total: -46.87 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.71 -7.50 -39.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393600423.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.714 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds