Wall clock time and date at job start Mon Mar 30 2020 03:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1 6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1 7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47458 * 89.99770 * 8 6 4 10 10 H 1.48501 * 109.47154 * 210.00388 * 8 6 4 11 11 H 1.48500 * 109.47109 * 329.99685 * 8 6 4 12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1 14 14 H 1.09004 * 109.46962 * 34.99990 * 13 12 2 15 15 C 1.52999 * 109.47094 * 274.99984 * 13 12 2 16 16 C 1.53002 * 109.47140 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46736 * 60.00233 * 16 15 13 18 18 C 1.52999 * 109.47116 * 299.99782 * 17 16 15 19 19 H 1.08992 * 109.47148 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47291 * 300.00559 * 18 17 16 21 21 N 1.34786 * 119.99565 * 299.99433 * 20 18 17 22 22 O 1.21277 * 120.00566 * 120.00440 * 20 18 17 23 23 C 1.52999 * 109.46836 * 60.00281 * 18 17 16 24 24 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 25 25 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 26 26 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 27 27 H 0.97003 * 119.99872 * 179.97438 * 7 6 4 28 28 H 1.00901 * 111.00067 * 38.94911 * 12 2 1 29 29 H 1.08997 * 109.47624 * 300.00377 * 15 13 12 30 30 H 1.09006 * 109.47163 * 60.00429 * 15 13 12 31 31 H 1.09003 * 109.46910 * 300.00632 * 16 15 13 32 32 H 1.08997 * 109.47282 * 180.02562 * 16 15 13 33 33 H 1.08999 * 109.46739 * 180.02562 * 17 16 15 34 34 H 1.08997 * 109.46798 * 60.00194 * 17 16 15 35 35 H 0.96997 * 120.00181 * 0.02562 * 21 20 18 36 36 H 0.97001 * 119.99736 * 179.97438 * 21 20 18 37 37 H 1.09009 * 109.47236 * 180.02562 * 23 18 17 38 38 H 1.08998 * 109.47496 * 59.99960 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 1.3426 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1123 11 1 3.6292 -1.7583 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2576 0.9330 2.2907 15 6 3.4112 0.9808 2.3224 16 6 3.4763 1.9344 3.5171 17 6 3.3706 1.1325 4.8159 18 6 2.0420 0.3742 4.8405 19 1 1.9665 -0.1966 5.7659 20 6 0.9016 1.3563 4.7621 21 7 0.7566 2.2981 5.7154 22 8 0.1142 1.2992 3.8415 23 6 1.9769 -0.5792 3.6457 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.7095 1.1619 -3.4844 28 1 1.4495 -1.4979 1.4100 29 1 4.2360 0.2705 2.3785 30 1 3.4863 1.5524 1.3973 31 1 2.6514 2.6446 3.4605 32 1 4.4227 2.4749 3.4994 33 1 3.4166 1.8118 5.6671 34 1 4.1955 0.4222 4.8725 35 1 1.3865 2.3439 6.4516 36 1 0.0228 2.9305 5.6648 37 1 1.0300 -1.1192 3.6629 38 1 2.8016 -1.2896 3.7023 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393600424.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:02 Heat of formation + Delta-G solvation = -85.214380 kcal Electronic energy + Delta-G solvation = -18245.088735 eV Core-core repulsion = 15506.172304 eV Total energy + Delta-G solvation = -2738.916431 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41236 -38.67088 -36.78227 -34.84627 -34.04679 -31.85215 -31.26309 -28.04857 -27.23201 -24.81812 -23.06543 -22.53990 -21.33275 -20.26873 -18.44284 -17.96080 -17.29725 -16.82289 -16.72622 -15.76540 -15.64439 -15.23162 -14.92107 -14.65525 -14.33185 -14.00862 -13.34756 -13.09505 -13.03026 -12.95728 -12.88689 -12.80022 -12.42795 -12.21197 -12.01697 -11.96765 -11.71141 -11.27071 -10.96758 -10.91879 -10.60900 -10.50331 -10.47035 -8.84689 -8.08553 -6.21105 1.41680 1.43197 1.54706 1.76141 2.44264 2.71249 3.18642 3.53653 3.83416 3.88362 4.03255 4.26681 4.43635 4.45468 4.54909 4.64300 4.71073 4.72998 4.82294 4.93368 5.05549 5.08643 5.13708 5.21921 5.31147 5.33263 5.43540 5.46714 5.59695 5.67273 5.86373 6.01021 6.29593 6.57991 6.70229 6.89564 6.98283 7.48880 7.49811 8.97588 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040263 B = 0.006028 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.257896 B = 4643.982981 C = 4884.701976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.223 3.777 3 H -0.008 1.008 4 C -0.513 4.513 5 H 0.057 0.943 6 C 0.003 3.997 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.682 5.682 13 C 0.072 3.928 14 H 0.035 0.965 15 C -0.104 4.104 16 C -0.118 4.118 17 C -0.099 4.099 18 C -0.100 4.100 19 H 0.137 0.863 20 C 0.511 3.489 21 N -0.838 5.838 22 O -0.589 6.589 23 C -0.095 4.095 24 H 0.011 0.989 25 H 0.059 0.941 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.325 0.675 29 H 0.069 0.931 30 H 0.018 0.982 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.418 0.582 36 H 0.402 0.598 37 H 0.049 0.951 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.781 1.535 20.763 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.114 3.886 3 H 0.010 0.990 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.195 4.195 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.311 5.311 13 C -0.038 4.038 14 H 0.053 0.947 15 C -0.142 4.142 16 C -0.156 4.156 17 C -0.136 4.136 18 C -0.122 4.122 19 H 0.155 0.845 20 C 0.297 3.703 21 N -0.402 5.402 22 O -0.469 6.469 23 C -0.133 4.133 24 H 0.030 0.970 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.142 0.858 29 H 0.087 0.913 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.250 0.750 36 H 0.233 0.767 37 H 0.067 0.933 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.991 1.549 19.833 20.509 hybrid contribution -1.223 0.337 -0.917 1.565 sum 3.768 1.886 18.916 19.380 Atomic orbital electron populations 1.22198 1.00860 0.98709 0.99260 1.18837 0.89272 0.92340 0.88159 0.99036 1.21481 1.30294 1.12371 0.91003 0.92470 1.25845 0.95484 0.95911 1.02239 1.70060 1.38330 1.24526 1.23914 0.85418 0.78851 0.78105 0.78380 1.19991 1.20923 1.19184 1.60783 1.57030 1.09460 1.03790 1.21759 0.96842 0.94830 0.90348 0.94734 1.21497 0.97588 0.97974 0.97153 1.21570 1.01685 0.97448 0.94856 1.21571 0.95258 0.99527 0.97249 1.21412 0.93773 0.95781 1.01201 0.84547 1.21181 0.85992 0.82216 0.80936 1.43728 1.34197 1.34432 1.27890 1.90763 1.46966 1.73934 1.35278 1.21461 1.01940 0.97415 0.92504 0.96980 0.92211 0.95157 0.93087 0.85808 0.91270 0.96261 0.94398 0.89992 0.87998 0.88655 0.75015 0.76727 0.93256 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.46 8.92 71.98 0.64 -7.82 16 2 C 0.22 12.65 2.38 44.17 0.11 12.76 16 3 H -0.01 -0.53 7.11 -2.39 -0.02 -0.55 16 4 C -0.51 -30.69 8.84 25.60 0.23 -30.47 16 5 H 0.06 3.39 7.81 -2.91 -0.02 3.36 16 6 C 0.00 0.15 5.30 84.66 0.45 0.60 16 7 N -0.93 -57.54 11.32 21.45 0.24 -57.30 16 8 Si 0.97 46.32 29.54 68.60 2.03 48.34 16 9 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.68 -32.18 6.04 -473.30 -2.86 -35.04 16 13 C 0.07 2.87 2.01 44.91 0.09 2.96 16 14 H 0.03 1.66 4.48 -2.38 -0.01 1.65 16 15 C -0.10 -3.75 5.41 30.59 0.17 -3.58 16 16 C -0.12 -2.99 5.70 30.60 0.17 -2.81 16 17 C -0.10 -1.59 5.36 30.60 0.16 -1.43 16 18 C -0.10 -2.01 3.01 -11.54 -0.03 -2.05 16 19 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 20 C 0.51 13.02 5.91 87.66 0.52 13.54 16 21 N -0.84 -12.56 8.77 -173.52 -1.52 -14.08 16 22 O -0.59 -22.89 14.49 -3.02 -0.04 -22.93 16 23 C -0.09 -2.78 4.36 30.59 0.13 -2.64 16 24 H 0.01 0.62 7.43 -2.38 -0.02 0.61 16 25 H 0.06 3.64 6.07 -2.39 -0.01 3.63 16 26 H 0.03 1.59 8.13 -2.39 -0.02 1.57 16 27 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 28 H 0.33 14.73 8.09 -89.69 -0.73 14.00 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.02 0.83 7.43 -2.38 -0.02 0.81 16 31 H 0.04 1.10 7.22 -2.39 -0.02 1.08 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.10 0.89 7.56 -2.39 -0.02 0.87 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.42 2.71 8.25 -92.71 -0.76 1.94 16 36 H 0.40 5.86 8.93 -92.71 -0.83 5.03 16 37 H 0.05 1.56 8.08 -2.38 -0.02 1.54 16 38 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -78.12 294.29 -0.76 -78.88 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -1.24 Total: 23.05 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 2.63 Total: -20.94 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -4.14 Total: -106.42 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.04 Total: -22.93 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -78.12 -0.76 -78.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393600424.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.333 kcal (2) G-P(sol) polarization free energy of solvation -78.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds