Wall clock time and date at job start Mon Mar 30 2020 03:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47325 * 2 1 4 4 C 1.50701 * 109.47124 * 240.00326 * 2 1 3 5 5 H 1.08005 * 120.00450 * 240.00191 * 4 2 1 6 6 C 1.37884 * 120.00065 * 59.99867 * 4 2 1 7 7 N 1.31510 * 119.99748 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00159 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46821 * 60.00413 * 8 6 4 10 10 H 1.48493 * 109.46910 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47234 * 300.00433 * 8 6 4 12 12 N 1.46905 * 109.47228 * 120.00668 * 2 1 3 13 13 C 1.46903 * 110.99880 * 206.05977 * 12 2 1 14 14 H 1.08995 * 109.47164 * 328.65725 * 13 12 2 15 15 C 1.53010 * 109.46642 * 88.65338 * 13 12 2 16 16 C 1.53001 * 109.46718 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47148 * 299.99997 * 16 15 13 18 18 C 1.52998 * 109.47055 * 59.99957 * 17 16 15 19 19 H 1.09001 * 109.47208 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47236 * 60.00402 * 18 17 16 21 21 N 1.34774 * 119.99944 * 59.99265 * 20 18 17 22 22 O 1.21281 * 119.99805 * 240.00236 * 20 18 17 23 23 C 1.53000 * 109.46813 * 208.65113 * 13 12 2 24 24 H 1.08992 * 109.47164 * 297.77986 * 1 2 3 25 25 H 1.08996 * 109.46771 * 57.78082 * 1 2 3 26 26 H 1.09000 * 109.46700 * 177.78035 * 1 2 3 27 27 H 0.96995 * 120.00306 * 179.97438 * 7 6 4 28 28 H 1.00898 * 110.99738 * 82.11059 * 12 2 1 29 29 H 1.09003 * 109.46854 * 59.99998 * 15 13 12 30 30 H 1.09001 * 109.46937 * 299.99898 * 15 13 12 31 31 H 1.08999 * 109.46897 * 180.02562 * 16 15 13 32 32 H 1.08992 * 109.47328 * 59.99934 * 16 15 13 33 33 H 1.08997 * 109.47494 * 180.02562 * 17 16 15 34 34 H 1.09003 * 109.47281 * 300.00481 * 17 16 15 35 35 H 0.96997 * 120.00042 * 0.02562 * 21 20 18 36 36 H 0.97002 * 120.00024 * 180.02562 * 21 20 18 37 37 H 1.08997 * 109.47164 * 299.99780 * 23 13 12 38 38 H 1.08996 * 109.46745 * 60.00504 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3225 -1.1193 -4.0081 9 1 1.8279 -2.5196 -4.0084 10 1 1.8279 -0.4189 -5.2205 11 1 3.8075 -1.1188 -4.0079 12 7 2.0197 -0.6927 1.1994 13 6 3.3568 -0.2137 1.5748 14 1 3.9021 0.0811 0.6783 15 6 3.2233 0.9902 2.5097 16 6 4.6158 1.4886 2.9012 17 6 5.3757 0.3696 3.6161 18 6 5.5091 -0.8343 2.6814 19 1 6.0508 -1.6314 3.1905 20 6 6.2637 -0.4269 1.4421 21 7 7.5212 0.0471 1.5442 22 8 5.7393 -0.5254 0.3530 23 6 4.1171 -1.3326 2.2896 24 1 -0.3633 0.4789 0.9091 25 1 -0.3633 0.5479 -0.8694 26 1 -0.3633 -1.0269 -0.0398 27 1 0.7095 1.1620 -3.4843 28 1 2.0183 -1.6927 1.0653 29 1 2.6779 0.6953 3.4062 30 1 2.6815 1.7873 2.0004 31 1 4.5208 2.3460 3.5675 32 1 5.1616 1.7833 2.0050 33 1 6.3676 0.7247 3.8955 34 1 4.8299 0.0748 4.5125 35 1 7.9407 0.1257 2.4153 36 1 8.0068 0.3097 0.7466 37 1 3.5718 -1.6273 3.1861 38 1 4.2121 -2.1902 1.6236 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393600425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:04 Heat of formation + Delta-G solvation = -86.411666 kcal Electronic energy + Delta-G solvation = -18407.595675 eV Core-core repulsion = 15668.627326 eV Total energy + Delta-G solvation = -2738.968349 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37455 -38.59983 -36.74898 -34.81721 -33.97543 -31.83620 -31.37296 -28.09612 -27.14882 -24.76937 -23.01276 -22.25207 -21.47225 -20.17520 -18.61159 -17.94384 -17.30288 -16.87659 -16.75922 -15.67459 -15.60346 -15.27945 -14.84458 -14.70793 -14.18484 -13.92402 -13.36624 -13.20863 -13.01159 -12.92362 -12.87560 -12.76501 -12.35236 -12.12992 -12.08013 -11.86992 -11.71463 -11.18400 -11.04572 -10.93544 -10.57960 -10.52102 -10.44248 -8.97205 -8.07784 -6.27595 1.31235 1.34744 1.42145 1.80083 2.37958 2.72981 3.12225 3.56744 3.85900 3.90248 4.05122 4.28938 4.47760 4.49737 4.57886 4.67828 4.74812 4.85358 4.91103 5.06557 5.12447 5.15199 5.24714 5.26030 5.34153 5.36115 5.48780 5.51228 5.64223 5.73188 6.02144 6.06755 6.21024 6.42819 6.60748 6.86231 7.03611 7.42372 7.53721 8.90074 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025101 B = 0.008158 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.226338 B = 3431.360102 C = 4102.514580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.218 3.782 3 H -0.010 1.010 4 C -0.546 4.546 5 H 0.040 0.960 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.949 3.051 9 H -0.267 1.267 10 H -0.276 1.276 11 H -0.285 1.285 12 N -0.681 5.681 13 C 0.074 3.926 14 H 0.035 0.965 15 C -0.102 4.102 16 C -0.119 4.119 17 C -0.097 4.097 18 C -0.099 4.099 19 H 0.135 0.865 20 C 0.505 3.495 21 N -0.839 5.839 22 O -0.586 6.586 23 C -0.096 4.096 24 H 0.028 0.972 25 H 0.054 0.946 26 H 0.027 0.973 27 H 0.262 0.738 28 H 0.325 0.675 29 H 0.074 0.926 30 H 0.022 0.978 31 H 0.085 0.915 32 H 0.033 0.967 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.418 0.582 36 H 0.401 0.599 37 H 0.092 0.908 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.329 -1.402 15.480 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.109 3.891 3 H 0.008 0.992 4 C -0.586 4.586 5 H 0.058 0.942 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.775 3.225 9 H -0.192 1.192 10 H -0.201 1.201 11 H -0.211 1.211 12 N -0.309 5.309 13 C -0.036 4.036 14 H 0.053 0.947 15 C -0.140 4.140 16 C -0.157 4.157 17 C -0.135 4.135 18 C -0.121 4.121 19 H 0.152 0.848 20 C 0.291 3.709 21 N -0.404 5.404 22 O -0.465 6.465 23 C -0.134 4.134 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.141 0.859 29 H 0.093 0.907 30 H 0.040 0.960 31 H 0.103 0.897 32 H 0.052 0.948 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.250 0.750 36 H 0.231 0.769 37 H 0.111 0.889 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.423 -0.984 15.192 19.650 hybrid contribution 0.938 -0.446 -2.231 2.461 sum 13.361 -1.430 12.961 18.670 Atomic orbital electron populations 1.21499 0.97448 0.98975 0.99042 1.18871 0.92421 0.92047 0.85792 0.99214 1.22034 1.30801 1.12448 0.93284 0.94178 1.25669 0.95207 0.95739 1.01718 1.70000 1.37632 1.23894 1.23988 0.85753 0.78142 0.79252 0.79329 1.19216 1.20068 1.21100 1.60954 1.24411 1.08702 1.36842 1.21687 0.89029 0.95577 0.97275 0.94728 1.21497 0.97327 0.96255 0.98925 1.21571 0.94969 0.99426 0.99715 1.21562 1.02313 0.92166 0.97415 1.21402 0.95585 1.01389 0.93716 0.84780 1.21293 0.82433 0.75886 0.91293 1.43721 1.15137 1.67661 1.13869 1.90850 1.68544 1.55437 1.31655 1.21474 0.94784 0.96753 1.00423 0.95281 0.92669 0.95423 0.92889 0.85931 0.90706 0.95954 0.89675 0.94836 0.88156 0.88353 0.75045 0.76906 0.88938 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.96 9.27 71.98 0.67 -5.29 16 2 C 0.22 12.27 2.39 44.17 0.11 12.37 16 3 H -0.01 -0.64 7.39 -2.39 -0.02 -0.66 16 4 C -0.55 -33.37 8.34 25.60 0.21 -33.15 16 5 H 0.04 2.49 7.73 -2.91 -0.02 2.47 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.92 -56.81 11.34 21.45 0.24 -56.57 16 8 Si 0.95 48.11 29.54 68.60 2.03 50.13 16 9 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.28 -14.69 7.11 99.48 0.71 -13.98 16 12 N -0.68 -31.92 6.07 -473.28 -2.87 -34.79 16 13 C 0.07 3.07 1.99 44.92 0.09 3.16 16 14 H 0.03 1.81 5.01 -2.39 -0.01 1.80 16 15 C -0.10 -3.57 5.46 30.60 0.17 -3.40 16 16 C -0.12 -3.05 5.70 30.59 0.17 -2.87 16 17 C -0.10 -1.63 5.36 30.59 0.16 -1.47 16 18 C -0.10 -2.20 3.01 -11.56 -0.03 -2.23 16 19 H 0.13 1.90 8.14 -2.39 -0.02 1.89 16 20 C 0.50 14.53 5.91 87.66 0.52 15.05 16 21 N -0.84 -14.93 8.77 -173.53 -1.52 -16.45 16 22 O -0.59 -25.67 14.49 -3.03 -0.04 -25.71 16 23 C -0.10 -3.00 4.32 30.58 0.13 -2.86 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 3.20 6.13 -2.39 -0.01 3.19 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.32 15.09 7.96 -89.70 -0.71 14.38 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.02 0.91 7.72 -2.39 -0.02 0.89 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.03 1.02 7.22 -2.39 -0.02 1.00 16 33 H 0.10 0.96 7.57 -2.39 -0.02 0.95 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.42 3.61 8.25 -92.71 -0.76 2.84 16 36 H 0.40 7.11 8.93 -92.71 -0.83 6.28 16 37 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 Total: -1.00 -79.18 295.85 -0.76 -79.93 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -1.23 Total: 22.75 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 2.65 Total: -19.30 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -4.15 Total: -107.81 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.04 Total: -25.71 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.13 kcal Total: -79.18 -0.76 -79.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393600425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.479 kcal (2) G-P(sol) polarization free energy of solvation -79.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds