Wall clock time and date at job start Mon Mar 30 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00371 * 2 1 4 4 C 1.50697 * 110.01845 * 302.55327 * 3 2 1 5 5 O 1.21286 * 120.00477 * 144.10764 * 4 3 2 6 6 N 1.34778 * 120.00057 * 324.09982 * 4 3 2 7 7 C 1.46499 * 120.00164 * 174.99715 * 6 4 3 8 8 H 1.09001 * 109.47424 * 325.00735 * 7 6 4 9 9 C 1.53003 * 109.46769 * 85.00597 * 7 6 4 10 10 C 1.50706 * 109.47098 * 205.00547 * 7 6 4 11 11 H 1.08000 * 119.99962 * 359.97438 * 10 7 6 12 12 C 1.37876 * 119.99504 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00565 * 0.02562 * 12 10 7 14 14 Si 1.86802 * 119.99672 * 179.97438 * 12 10 7 15 15 H 1.48499 * 109.47234 * 90.00058 * 14 12 10 16 16 H 1.48502 * 109.47239 * 210.00263 * 14 12 10 17 17 H 1.48501 * 109.46852 * 330.00416 * 14 12 10 18 18 C 1.54270 * 110.02797 * 63.94104 * 3 2 1 19 19 C 1.54964 * 104.16357 * 95.75724 * 18 3 2 20 20 C 1.54892 * 102.77459 * 37.88272 * 19 18 3 21 21 C 1.53872 * 110.03623 * 181.15548 * 3 2 1 22 22 H 1.08996 * 109.47219 * 174.96292 * 1 2 3 23 23 H 1.08997 * 109.46932 * 294.96501 * 1 2 3 24 24 H 1.08999 * 109.47188 * 54.96340 * 1 2 3 25 25 H 1.00903 * 110.99808 * 123.96078 * 2 1 3 26 26 H 0.97007 * 119.99626 * 355.00796 * 6 4 3 27 27 H 1.08992 * 109.46905 * 60.00066 * 9 7 6 28 28 H 1.08998 * 109.46786 * 299.99685 * 9 7 6 29 29 H 1.09003 * 109.46806 * 179.97438 * 9 7 6 30 30 H 0.96995 * 119.99822 * 179.97438 * 13 12 10 31 31 H 1.09004 * 110.48687 * 214.40549 * 18 3 2 32 32 H 1.08999 * 110.48769 * 337.04445 * 18 3 2 33 33 H 1.09000 * 110.71789 * 279.57436 * 19 18 3 34 34 H 1.08994 * 110.76565 * 156.22382 * 19 18 3 35 35 H 1.08995 * 110.48420 * 203.40652 * 20 19 18 36 36 H 1.09003 * 110.48195 * 80.77161 * 20 19 18 37 37 H 1.08998 * 110.02870 * 359.95559 * 21 3 2 38 38 H 1.08996 * 110.03339 * 121.38360 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.4692 2.1260 -1.1935 5 8 1.2057 3.3060 -1.0970 6 7 1.2914 1.4898 -2.3683 7 6 0.6777 2.1938 -3.4970 8 1 -0.0824 2.8816 -3.1265 9 6 1.7515 2.9793 -4.2527 10 6 0.0398 1.1933 -4.4262 11 1 0.0872 0.1386 -4.1989 12 6 -0.6033 1.6246 -5.5670 13 7 -0.6597 2.9089 -5.8446 14 14 -1.3934 0.3845 -6.7191 15 1 -2.8026 0.1565 -6.3100 16 1 -1.3597 0.9080 -8.1084 17 1 -0.6458 -0.8971 -6.6548 18 6 1.5905 2.0928 1.3021 19 6 2.8166 1.9128 2.2325 20 6 4.0109 2.0527 1.2561 21 6 3.5338 1.3455 -0.0292 22 1 -0.3633 -1.0237 -0.0902 23 1 -0.3633 0.4337 0.9316 24 1 -0.3633 0.5900 -0.8414 25 1 1.8306 -0.5262 0.7813 26 1 1.5696 0.5657 -2.4663 27 1 2.5115 2.2915 -4.6232 28 1 2.2127 3.7029 -3.5806 29 1 1.2950 3.5027 -5.0928 30 1 -1.1118 3.2121 -6.6473 31 1 1.4085 3.1505 1.1114 32 1 0.7077 1.6255 1.7384 33 1 2.8087 0.9255 2.6941 34 1 2.8441 2.6949 2.9911 35 1 4.8935 1.5565 1.6595 36 1 4.2204 3.1039 1.0578 37 1 3.8896 0.3153 -0.0425 38 1 3.8996 1.8787 -0.9066 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393763325.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:35 Heat of formation + Delta-G solvation = -47.658635 kcal Electronic energy + Delta-G solvation = -18296.872449 eV Core-core repulsion = 15559.584558 eV Total energy + Delta-G solvation = -2737.287892 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.05260 -37.19428 -34.74307 -33.98264 -32.17604 -29.32609 -28.46027 -27.69708 -25.19628 -24.40329 -22.31765 -20.65619 -19.97678 -18.79398 -17.02651 -16.24437 -15.85806 -15.23251 -14.90344 -14.48424 -13.95389 -13.85192 -13.44927 -13.16399 -12.73010 -12.31201 -12.03823 -11.71613 -11.55233 -11.20871 -11.11587 -11.05134 -10.96933 -10.88819 -10.83973 -10.66707 -10.53696 -10.23334 -10.18266 -9.01659 -8.93201 -8.49516 -8.31462 -7.77576 -6.07858 -4.16592 3.27239 3.33709 3.36064 3.42848 4.12050 4.24486 4.41776 4.68340 4.75629 5.03930 5.24231 5.42611 5.51570 5.51805 5.60903 5.65872 5.72266 5.72653 5.87191 5.91796 6.07652 6.19660 6.28129 6.32639 6.41603 6.87849 7.00897 7.04755 7.21951 7.42802 7.54486 7.66531 7.77218 7.98569 8.20753 8.80008 8.85102 9.24794 9.51597 10.98117 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038109 B = 0.006442 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.553811 B = 4345.476301 C = 4671.368769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.673 5.673 3 C 0.091 3.909 4 C 0.516 3.484 5 O -0.560 6.560 6 N -0.695 5.695 7 C 0.263 3.737 8 H 0.044 0.956 9 C -0.147 4.147 10 C -0.530 4.530 11 H 0.062 0.938 12 C 0.065 3.935 13 N -0.885 5.885 14 Si 0.901 3.099 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.148 4.148 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.107 4.107 22 H 0.069 0.931 23 H 0.023 0.977 24 H 0.080 0.920 25 H 0.341 0.659 26 H 0.397 0.603 27 H 0.026 0.974 28 H 0.014 0.986 29 H 0.089 0.911 30 H 0.263 0.737 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.350 -5.485 12.906 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.304 5.304 3 C -0.004 4.004 4 C 0.299 3.701 5 O -0.439 6.439 6 N -0.343 5.343 7 C 0.161 3.839 8 H 0.062 0.938 9 C -0.205 4.205 10 C -0.568 4.568 11 H 0.080 0.920 12 C -0.138 4.138 13 N -0.523 5.523 14 Si 0.729 3.271 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.188 4.188 19 C -0.159 4.159 20 C -0.161 4.161 21 C -0.145 4.145 22 H 0.088 0.912 23 H 0.041 0.959 24 H 0.099 0.901 25 H 0.159 0.841 26 H 0.231 0.769 27 H 0.045 0.955 28 H 0.034 0.966 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.098 -4.591 12.073 14.283 hybrid contribution -0.560 -0.830 0.155 1.013 sum 5.538 -5.420 12.227 14.476 Atomic orbital electron populations 1.22395 0.87344 1.02486 1.01216 1.60598 1.08396 1.12050 1.49386 1.21873 0.95864 0.88510 0.94133 1.20024 0.78387 0.87220 0.84429 1.90633 1.52607 1.15869 1.84768 1.46495 1.59818 1.16121 1.11825 1.18729 0.91133 0.91980 0.82012 0.93826 1.22066 0.98337 0.98787 1.01359 1.21240 1.35598 0.93200 1.06776 0.92003 1.24892 0.95921 0.95382 0.97574 1.69910 1.42620 1.13351 1.26399 0.86458 0.79613 0.81178 0.79899 1.20631 1.21141 1.19816 1.23038 0.97728 1.03494 0.94525 1.22470 0.94868 1.01135 0.97435 1.22368 0.97640 1.01021 0.95088 1.22131 0.92061 1.01678 0.98665 0.91216 0.95858 0.90149 0.84082 0.76933 0.95525 0.96643 0.89274 0.92667 0.89022 0.91515 0.91899 0.91529 0.91565 0.91337 0.90217 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 10.06 60.07 0.60 0.82 16 2 N -0.67 -9.00 5.74 -107.22 -0.62 -9.61 16 3 C 0.09 1.38 0.77 -131.64 -0.10 1.28 16 4 C 0.52 10.64 5.13 -10.99 -0.06 10.58 16 5 O -0.56 -13.68 15.22 5.55 0.08 -13.60 16 6 N -0.70 -15.10 4.12 -54.93 -0.23 -15.32 16 7 C 0.26 6.87 2.52 -69.08 -0.17 6.69 16 8 H 0.04 1.31 7.65 -51.93 -0.40 0.91 16 9 C -0.15 -3.77 9.26 37.16 0.34 -3.43 16 10 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 11 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 12 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 13 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 14 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 C -0.15 -2.09 5.77 -25.03 -0.14 -2.23 16 19 C -0.12 -1.32 6.91 -24.70 -0.17 -1.49 16 20 C -0.12 -1.39 6.83 -25.07 -0.17 -1.56 16 21 C -0.11 -1.42 6.20 -25.62 -0.16 -1.58 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.02 0.30 6.33 -51.93 -0.33 -0.03 16 24 H 0.08 1.43 6.32 -51.93 -0.33 1.10 16 25 H 0.34 3.68 8.81 -39.29 -0.35 3.34 16 26 H 0.40 7.99 8.05 -40.82 -0.33 7.66 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.01 0.37 8.10 -51.93 -0.42 -0.05 16 29 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.09 1.54 6.79 -51.93 -0.35 1.19 16 32 H 0.07 0.89 6.03 -51.93 -0.31 0.57 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 38 H 0.07 1.09 7.67 -51.93 -0.40 0.69 16 LS Contribution 299.37 15.07 4.51 4.51 Total: -1.00 -29.94 299.37 -7.08 -37.02 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.02 Total: 9.60 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.42 Total: -3.82 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.21 Total: -49.61 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.08 Total: -13.60 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.94 -7.08 -37.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393763325.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.642 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds