Wall clock time and date at job start Mon Mar 30 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00371 * 2 1 4 4 C 1.50697 * 110.01845 * 302.55327 * 3 2 1 5 5 O 1.21286 * 120.00477 * 144.10764 * 4 3 2 6 6 N 1.34778 * 120.00057 * 324.09982 * 4 3 2 7 7 C 1.46499 * 120.00164 * 174.99715 * 6 4 3 8 8 H 1.09001 * 109.47424 * 325.00735 * 7 6 4 9 9 C 1.53003 * 109.46769 * 85.00597 * 7 6 4 10 10 C 1.50706 * 109.47098 * 205.00547 * 7 6 4 11 11 H 1.08000 * 119.99962 * 359.97438 * 10 7 6 12 12 C 1.37876 * 119.99504 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00565 * 0.02562 * 12 10 7 14 14 Si 1.86802 * 119.99672 * 179.97438 * 12 10 7 15 15 H 1.48499 * 109.47234 * 90.00058 * 14 12 10 16 16 H 1.48502 * 109.47239 * 210.00263 * 14 12 10 17 17 H 1.48501 * 109.46852 * 330.00416 * 14 12 10 18 18 C 1.54270 * 110.02797 * 63.94104 * 3 2 1 19 19 C 1.54964 * 104.16357 * 95.75724 * 18 3 2 20 20 C 1.54892 * 102.77459 * 37.88272 * 19 18 3 21 21 C 1.53872 * 110.03623 * 181.15548 * 3 2 1 22 22 H 1.08996 * 109.47219 * 174.96292 * 1 2 3 23 23 H 1.08997 * 109.46932 * 294.96501 * 1 2 3 24 24 H 1.08999 * 109.47188 * 54.96340 * 1 2 3 25 25 H 1.00903 * 110.99808 * 123.96078 * 2 1 3 26 26 H 0.97007 * 119.99626 * 355.00796 * 6 4 3 27 27 H 1.08992 * 109.46905 * 60.00066 * 9 7 6 28 28 H 1.08998 * 109.46786 * 299.99685 * 9 7 6 29 29 H 1.09003 * 109.46806 * 179.97438 * 9 7 6 30 30 H 0.96995 * 119.99822 * 179.97438 * 13 12 10 31 31 H 1.09004 * 110.48687 * 214.40549 * 18 3 2 32 32 H 1.08999 * 110.48769 * 337.04445 * 18 3 2 33 33 H 1.09000 * 110.71789 * 279.57436 * 19 18 3 34 34 H 1.08994 * 110.76565 * 156.22382 * 19 18 3 35 35 H 1.08995 * 110.48420 * 203.40652 * 20 19 18 36 36 H 1.09003 * 110.48195 * 80.77161 * 20 19 18 37 37 H 1.08998 * 110.02870 * 359.95559 * 21 3 2 38 38 H 1.08996 * 110.03339 * 121.38360 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.4692 2.1260 -1.1935 5 8 1.2057 3.3060 -1.0970 6 7 1.2914 1.4898 -2.3683 7 6 0.6777 2.1938 -3.4970 8 1 -0.0824 2.8816 -3.1265 9 6 1.7515 2.9793 -4.2527 10 6 0.0398 1.1933 -4.4262 11 1 0.0872 0.1386 -4.1989 12 6 -0.6033 1.6246 -5.5670 13 7 -0.6597 2.9089 -5.8446 14 14 -1.3934 0.3845 -6.7191 15 1 -2.8026 0.1565 -6.3100 16 1 -1.3597 0.9080 -8.1084 17 1 -0.6458 -0.8971 -6.6548 18 6 1.5905 2.0928 1.3021 19 6 2.8166 1.9128 2.2325 20 6 4.0109 2.0527 1.2561 21 6 3.5338 1.3455 -0.0292 22 1 -0.3633 -1.0237 -0.0902 23 1 -0.3633 0.4337 0.9316 24 1 -0.3633 0.5900 -0.8414 25 1 1.8306 -0.5262 0.7813 26 1 1.5696 0.5657 -2.4663 27 1 2.5115 2.2915 -4.6232 28 1 2.2127 3.7029 -3.5806 29 1 1.2950 3.5027 -5.0928 30 1 -1.1118 3.2121 -6.6473 31 1 1.4085 3.1505 1.1114 32 1 0.7077 1.6255 1.7384 33 1 2.8087 0.9255 2.6941 34 1 2.8441 2.6949 2.9911 35 1 4.8935 1.5565 1.6595 36 1 4.2204 3.1039 1.0578 37 1 3.8896 0.3153 -0.0425 38 1 3.8996 1.8787 -0.9066 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393763325.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:35 Heat of formation + Delta-G solvation = -69.217368 kcal Electronic energy + Delta-G solvation = -18297.807306 eV Core-core repulsion = 15559.584558 eV Total energy + Delta-G solvation = -2738.222748 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.48897 -38.68223 -36.68396 -35.16020 -34.11843 -31.05409 -29.72484 -28.92235 -27.34632 -25.57502 -23.95261 -21.97440 -21.41002 -20.46564 -18.65312 -17.72687 -17.43451 -16.84091 -16.48732 -15.71388 -15.60742 -15.22102 -14.83077 -14.68698 -14.34713 -13.80175 -13.73410 -13.23656 -13.01395 -12.90119 -12.79922 -12.71099 -12.34579 -12.27854 -12.15015 -12.04674 -12.03659 -11.82258 -11.46677 -11.13051 -10.68300 -10.53613 -9.68780 -9.46810 -8.17775 -6.35403 1.44248 1.45031 1.56244 1.78626 2.36042 2.64510 3.10880 3.12640 3.57445 3.66837 3.96808 4.28985 4.36317 4.41910 4.48118 4.59985 4.61287 4.71819 4.78115 4.86232 4.90847 5.02026 5.06493 5.08055 5.14864 5.18869 5.26984 5.40766 5.46376 5.62012 5.67846 5.79547 5.97186 6.09687 6.49740 6.72689 7.02390 7.32265 7.58114 8.88705 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038109 B = 0.006442 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.553811 B = 4345.476301 C = 4671.368769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.667 5.667 3 C 0.100 3.900 4 C 0.510 3.490 5 O -0.606 6.606 6 N -0.691 5.691 7 C 0.271 3.729 8 H -0.008 1.008 9 C -0.133 4.133 10 C -0.543 4.543 11 H 0.071 0.929 12 C 0.013 3.987 13 N -0.919 5.919 14 Si 0.974 3.026 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.260 1.260 18 C -0.150 4.150 19 C -0.110 4.110 20 C -0.120 4.120 21 C -0.106 4.106 22 H 0.092 0.908 23 H 0.034 0.966 24 H 0.036 0.964 25 H 0.364 0.636 26 H 0.407 0.593 27 H 0.039 0.961 28 H 0.009 0.991 29 H 0.067 0.933 30 H 0.265 0.735 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.106 0.894 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.312 -8.268 14.222 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.301 5.301 3 C 0.005 3.995 4 C 0.296 3.704 5 O -0.488 6.488 6 N -0.338 5.338 7 C 0.167 3.833 8 H 0.010 0.990 9 C -0.192 4.192 10 C -0.581 4.581 11 H 0.090 0.910 12 C -0.186 4.186 13 N -0.558 5.558 14 Si 0.798 3.202 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.184 1.184 18 C -0.190 4.190 19 C -0.147 4.147 20 C -0.158 4.158 21 C -0.144 4.144 22 H 0.110 0.890 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.186 0.814 26 H 0.242 0.758 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.124 0.876 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.087 -7.413 13.425 16.894 hybrid contribution -0.883 0.090 -0.228 0.917 sum 6.203 -7.323 13.197 16.318 Atomic orbital electron populations 1.22320 0.87816 1.03106 0.99877 1.60514 1.07962 1.10852 1.50758 1.21772 0.97176 0.88996 0.91526 1.21054 0.76972 0.87004 0.85378 1.90606 1.54315 1.18275 1.85567 1.46254 1.59824 1.16307 1.11451 1.18331 0.90295 0.91545 0.83125 0.98969 1.21891 0.98268 0.98651 1.00366 1.21511 1.35923 0.93614 1.07051 0.91040 1.25826 0.96293 0.97260 0.99252 1.70060 1.43299 1.15443 1.26979 0.85317 0.78566 0.78930 0.77353 1.20244 1.20890 1.18380 1.23026 0.99988 1.01105 0.94848 1.22467 0.92302 1.03190 0.96748 1.22381 0.99019 1.00282 0.94094 1.22177 0.90063 1.03224 0.98937 0.88958 0.94783 0.94476 0.81445 0.75754 0.94221 0.97170 0.91448 0.92556 0.92592 0.90712 0.88985 0.90473 0.88386 0.92852 0.87606 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.06 127.69 1.28 1.78 16 2 N -0.67 -16.22 5.74 -493.13 -2.83 -19.05 16 3 C 0.10 2.94 0.77 3.51 0.00 2.94 16 4 C 0.51 21.68 5.13 87.66 0.45 22.13 16 5 O -0.61 -31.37 15.22 -3.05 -0.05 -31.42 16 6 N -0.69 -30.79 4.12 -446.08 -1.84 -32.63 16 7 C 0.27 14.72 2.52 44.25 0.11 14.83 16 8 H -0.01 -0.49 7.65 -2.39 -0.02 -0.50 16 9 C -0.13 -7.10 9.26 71.98 0.67 -6.43 16 10 C -0.54 -29.68 8.73 25.60 0.22 -29.46 16 11 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 12 C 0.01 0.74 5.30 84.65 0.45 1.19 16 13 N -0.92 -53.97 11.32 21.45 0.24 -53.72 16 14 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 18 C -0.15 -4.06 5.77 31.70 0.18 -3.88 16 19 C -0.11 -2.02 6.91 31.91 0.22 -1.80 16 20 C -0.12 -2.36 6.83 31.67 0.22 -2.14 16 21 C -0.11 -2.59 6.20 31.32 0.19 -2.39 16 22 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.03 0.83 6.33 -2.39 -0.02 0.81 16 24 H 0.04 1.33 6.32 -2.39 -0.02 1.31 16 25 H 0.36 6.32 8.81 -89.69 -0.79 5.53 16 26 H 0.41 16.34 8.05 -92.70 -0.75 15.60 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.01 0.50 8.10 -2.39 -0.02 0.48 16 29 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 30 H 0.27 14.69 8.31 -92.71 -0.77 13.91 16 31 H 0.06 1.93 6.79 -2.38 -0.02 1.92 16 32 H 0.07 1.86 6.03 -2.39 -0.01 1.85 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.11 2.04 7.91 -2.39 -0.02 2.02 16 38 H 0.05 1.42 7.67 -2.39 -0.02 1.40 16 Total: -1.00 -68.36 299.37 1.08 -67.28 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.48 Total: 27.96 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 4.00 Total: -3.24 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -4.43 Total: -105.40 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.05 Total: -31.42 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -68.36 1.08 -67.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393763325.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.937 kcal (2) G-P(sol) polarization free energy of solvation -68.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds