Wall clock time and date at job start Mon Mar 30 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00199 * 2 1 4 4 O 1.21283 * 119.99750 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99928 * 180.27479 * 3 2 1 6 6 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 7 7 C 1.53000 * 109.47245 * 59.72201 * 5 3 2 8 8 N 1.46902 * 109.47027 * 179.72353 * 5 3 2 9 9 C 1.46845 * 110.99619 * 299.20895 * 8 5 3 10 10 C 1.53036 * 109.52176 * 174.16498 * 9 8 5 11 11 C 1.53121 * 109.28157 * 59.17563 * 10 9 8 12 12 C 1.50704 * 109.52208 * 182.44339 * 11 10 9 13 13 H 1.08001 * 119.99697 * 119.68058 * 12 11 10 14 14 C 1.37873 * 119.99731 * 299.68064 * 12 11 10 15 15 N 1.31507 * 120.00448 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99594 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47121 * 60.00089 * 16 14 12 18 18 H 1.48496 * 109.47370 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47448 * 300.00125 * 16 14 12 20 20 C 1.53123 * 109.15701 * 302.34955 * 11 10 9 21 21 C 1.46847 * 110.99773 * 174.99949 * 8 5 3 22 22 H 1.08998 * 109.47134 * 300.00670 * 1 2 3 23 23 H 1.09002 * 109.46857 * 59.99862 * 1 2 3 24 24 H 1.09001 * 109.47503 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99484 * 179.97438 * 2 1 3 26 26 H 1.08994 * 109.47175 * 180.02562 * 7 5 3 27 27 H 1.09001 * 109.46739 * 299.99817 * 7 5 3 28 28 H 1.08996 * 109.46783 * 59.99559 * 7 5 3 29 29 H 1.09005 * 109.46472 * 294.17400 * 9 8 5 30 30 H 1.08997 * 109.46853 * 54.14335 * 9 8 5 31 31 H 1.09007 * 109.50265 * 299.23649 * 10 9 8 32 32 H 1.08998 * 109.50786 * 179.12106 * 10 9 8 33 33 H 1.08998 * 109.52065 * 62.25218 * 11 10 9 34 34 H 0.97001 * 120.00284 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.50363 * 297.70691 * 20 11 10 36 36 H 1.09003 * 109.49741 * 177.60052 * 20 11 10 37 37 H 1.09000 * 109.46157 * 305.85322 * 21 8 5 38 38 H 1.09004 * 109.46401 * 65.82226 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0063 6 1 4.0129 0.6554 0.8835 7 6 4.1507 0.4428 -1.2558 8 7 4.1356 2.5521 -0.0117 9 6 3.6753 3.2683 -1.2081 10 6 4.0796 4.7410 -1.1098 11 6 5.6026 4.8401 -0.9871 12 6 6.0023 6.2846 -0.8296 13 1 6.5303 6.6053 0.0563 14 6 5.6937 7.1967 -1.8164 15 7 5.0503 6.8064 -2.8949 16 14 6.1897 8.9871 -1.6215 17 1 7.6664 9.0808 -1.4954 18 1 5.7443 9.7565 -2.8109 19 1 5.5523 9.5475 -0.4030 20 6 6.0607 4.0457 0.2392 21 6 5.5991 2.5932 0.1017 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.9499 -0.8401 0.0004 26 1 5.2407 0.4423 -1.2601 27 1 3.7874 -0.5849 -1.2517 28 1 3.7837 0.9544 -2.1455 29 1 4.1302 2.8253 -2.0941 30 1 2.5903 3.1936 -1.2813 31 1 3.6139 5.1884 -0.2316 32 1 3.7515 5.2691 -2.0051 33 1 6.0677 4.4281 -1.8826 34 1 4.8336 7.4480 -3.5893 35 1 5.6263 4.4821 1.1386 36 1 7.1482 4.0772 0.3076 37 1 5.9114 2.0282 0.9799 38 1 6.0450 2.1533 -0.7904 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397166425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:31 Heat of formation + Delta-G solvation = -34.398460 kcal Electronic energy + Delta-G solvation = -18139.170896 eV Core-core repulsion = 15402.458008 eV Total energy + Delta-G solvation = -2736.712887 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03843 -37.76519 -34.54250 -34.31228 -31.90683 -29.68870 -29.27962 -26.84834 -25.63830 -23.64520 -22.05202 -21.33521 -20.00347 -18.28335 -16.92482 -16.31993 -16.09709 -15.30554 -14.69857 -14.40663 -14.12278 -13.90519 -13.60696 -13.04637 -12.75888 -12.49443 -12.36996 -12.15046 -11.97177 -11.63709 -11.47381 -11.14333 -10.84041 -10.65294 -10.46262 -10.04051 -9.84426 -9.56342 -9.24146 -9.07429 -8.86223 -8.48526 -8.17709 -7.62825 -5.87484 -3.92658 2.82464 3.19671 3.39361 3.43560 3.46576 4.47283 4.53661 4.79829 5.11876 5.14074 5.21056 5.42646 5.42707 5.58023 5.68083 5.72515 5.83609 5.96354 6.07165 6.25446 6.36395 6.37368 6.51276 6.74809 6.87939 6.97794 7.16582 7.28453 7.43622 7.60346 7.72251 7.81397 7.94083 8.17812 8.29100 8.41300 8.59382 9.10728 9.71069 11.18688 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041152 B = 0.005803 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.247779 B = 4823.553603 C = 5153.753008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.743 5.743 3 C 0.516 3.484 4 O -0.508 6.508 5 C 0.063 3.937 6 H 0.100 0.900 7 C -0.183 4.183 8 N -0.512 5.512 9 C 0.045 3.955 10 C -0.100 4.100 11 C 0.047 3.953 12 C -0.510 4.510 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.106 4.106 21 C 0.060 3.940 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.398 0.602 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.018 0.982 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.019 0.981 34 H 0.259 0.741 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.716 -16.473 4.076 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.397 5.397 3 C 0.301 3.699 4 O -0.382 6.382 5 C -0.050 4.050 6 H 0.118 0.882 7 C -0.242 4.242 8 N -0.237 5.237 9 C -0.081 4.081 10 C -0.138 4.138 11 C 0.029 3.971 12 C -0.548 4.548 13 H 0.071 0.929 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.144 4.144 21 C -0.068 4.068 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.231 0.769 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.444 -15.343 4.313 16.842 hybrid contribution 0.774 0.056 -0.653 1.014 sum -4.670 -15.286 3.660 16.398 Atomic orbital electron populations 1.21471 0.79984 1.01691 1.02313 1.45848 1.07463 1.08743 1.77663 1.20689 0.90094 0.83420 0.75670 1.90691 1.69976 1.30829 1.46670 1.21632 0.91414 0.92824 0.99104 0.88216 1.22420 1.02658 1.00053 0.99106 1.62019 1.10770 1.08990 1.41913 1.22570 1.00602 0.97009 0.87953 1.21604 0.98678 0.90915 1.02627 1.18702 0.92347 0.94194 0.91881 1.21179 1.36198 0.93387 1.04071 0.92865 1.24959 0.95195 0.98525 0.95304 1.69875 1.40592 1.34339 1.08331 0.86707 0.78792 0.85351 0.77404 1.20434 1.21417 1.20323 1.21672 0.98639 0.92537 1.01510 1.22172 0.86457 0.99399 0.98765 0.92379 0.92391 0.91058 0.76882 0.91134 0.92347 0.91489 0.96432 0.90035 0.93848 0.89165 0.96294 0.93124 0.92450 0.93175 0.92535 0.95447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.70 59.85 0.64 1.47 16 2 N -0.74 -7.82 5.60 -67.08 -0.38 -8.19 16 3 C 0.52 7.83 6.84 -10.98 -0.08 7.75 16 4 O -0.51 -10.16 13.91 5.55 0.08 -10.08 16 5 C 0.06 0.91 2.77 -68.86 -0.19 0.72 16 6 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 7 C -0.18 -2.23 8.39 37.16 0.31 -1.92 16 8 N -0.51 -9.70 4.43 -228.08 -1.01 -10.71 16 9 C 0.05 0.98 4.48 -3.84 -0.02 0.96 16 10 C -0.10 -2.56 5.12 -26.65 -0.14 -2.70 16 11 C 0.05 1.23 2.16 -91.64 -0.20 1.03 16 12 C -0.51 -14.54 8.56 -34.44 -0.29 -14.83 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 15 N -0.89 -26.35 11.37 55.43 0.63 -25.72 16 16 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.11 -2.30 5.32 -26.65 -0.14 -2.44 16 21 C 0.06 1.08 5.02 -3.84 -0.02 1.06 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.40 2.83 8.24 -40.82 -0.34 2.50 16 26 H 0.07 0.86 6.65 -51.93 -0.35 0.51 16 27 H 0.06 0.51 7.55 -51.93 -0.39 0.12 16 28 H 0.07 0.95 6.52 -51.93 -0.34 0.61 16 29 H 0.02 0.38 6.62 -51.93 -0.34 0.03 16 30 H 0.08 1.84 5.31 -51.93 -0.28 1.56 16 31 H 0.04 1.17 8.14 -51.92 -0.42 0.74 16 32 H 0.09 2.55 6.17 -51.93 -0.32 2.23 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.03 0.49 6.73 -51.93 -0.35 0.14 16 LS Contribution 293.86 15.07 4.43 4.43 Total: -1.00 -32.81 293.86 -7.53 -40.34 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.04 Total: 0.23 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.22 Total: -7.25 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -0.76 Total: -44.63 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.81 -7.53 -40.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397166425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.939 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds