Wall clock time and date at job start Mon Mar 30 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00199 * 2 1 4 4 O 1.21283 * 119.99750 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99928 * 180.27479 * 3 2 1 6 6 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 7 7 C 1.53000 * 109.47245 * 59.72201 * 5 3 2 8 8 N 1.46902 * 109.47027 * 179.72353 * 5 3 2 9 9 C 1.46845 * 110.99619 * 299.20895 * 8 5 3 10 10 C 1.53036 * 109.52176 * 174.16498 * 9 8 5 11 11 C 1.53121 * 109.28157 * 59.17563 * 10 9 8 12 12 C 1.50704 * 109.52208 * 182.44339 * 11 10 9 13 13 H 1.08001 * 119.99697 * 119.68058 * 12 11 10 14 14 C 1.37873 * 119.99731 * 299.68064 * 12 11 10 15 15 N 1.31507 * 120.00448 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99594 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47121 * 60.00089 * 16 14 12 18 18 H 1.48496 * 109.47370 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47448 * 300.00125 * 16 14 12 20 20 C 1.53123 * 109.15701 * 302.34955 * 11 10 9 21 21 C 1.46847 * 110.99773 * 174.99949 * 8 5 3 22 22 H 1.08998 * 109.47134 * 300.00670 * 1 2 3 23 23 H 1.09002 * 109.46857 * 59.99862 * 1 2 3 24 24 H 1.09001 * 109.47503 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99484 * 179.97438 * 2 1 3 26 26 H 1.08994 * 109.47175 * 180.02562 * 7 5 3 27 27 H 1.09001 * 109.46739 * 299.99817 * 7 5 3 28 28 H 1.08996 * 109.46783 * 59.99559 * 7 5 3 29 29 H 1.09005 * 109.46472 * 294.17400 * 9 8 5 30 30 H 1.08997 * 109.46853 * 54.14335 * 9 8 5 31 31 H 1.09007 * 109.50265 * 299.23649 * 10 9 8 32 32 H 1.08998 * 109.50786 * 179.12106 * 10 9 8 33 33 H 1.08998 * 109.52065 * 62.25218 * 11 10 9 34 34 H 0.97001 * 120.00284 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.50363 * 297.70691 * 20 11 10 36 36 H 1.09003 * 109.49741 * 177.60052 * 20 11 10 37 37 H 1.09000 * 109.46157 * 305.85322 * 21 8 5 38 38 H 1.09004 * 109.46401 * 65.82226 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0063 6 1 4.0129 0.6554 0.8835 7 6 4.1507 0.4428 -1.2558 8 7 4.1356 2.5521 -0.0117 9 6 3.6753 3.2683 -1.2081 10 6 4.0796 4.7410 -1.1098 11 6 5.6026 4.8401 -0.9871 12 6 6.0023 6.2846 -0.8296 13 1 6.5303 6.6053 0.0563 14 6 5.6937 7.1967 -1.8164 15 7 5.0503 6.8064 -2.8949 16 14 6.1897 8.9871 -1.6215 17 1 7.6664 9.0808 -1.4954 18 1 5.7443 9.7565 -2.8109 19 1 5.5523 9.5475 -0.4030 20 6 6.0607 4.0457 0.2392 21 6 5.5991 2.5932 0.1017 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.9499 -0.8401 0.0004 26 1 5.2407 0.4423 -1.2601 27 1 3.7874 -0.5849 -1.2517 28 1 3.7837 0.9544 -2.1455 29 1 4.1302 2.8253 -2.0941 30 1 2.5903 3.1936 -1.2813 31 1 3.6139 5.1884 -0.2316 32 1 3.7515 5.2691 -2.0051 33 1 6.0677 4.4281 -1.8826 34 1 4.8336 7.4480 -3.5893 35 1 5.6263 4.4821 1.1386 36 1 7.1482 4.0772 0.3076 37 1 5.9114 2.0282 0.9799 38 1 6.0450 2.1533 -0.7904 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397166425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:31 Heat of formation + Delta-G solvation = -59.264963 kcal Electronic energy + Delta-G solvation = -18140.249188 eV Core-core repulsion = 15402.458008 eV Total energy + Delta-G solvation = -2737.791180 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.29731 -39.26958 -36.07049 -35.61430 -33.77423 -31.43166 -30.82598 -27.75771 -27.46818 -25.07505 -23.81673 -22.95050 -21.21029 -20.06111 -18.44648 -18.00770 -17.40860 -16.63143 -16.38055 -15.79891 -15.51982 -15.33102 -14.87208 -14.71559 -14.31122 -14.02798 -13.80247 -13.36575 -13.10038 -13.02529 -12.94238 -12.75552 -12.64735 -12.46771 -12.32115 -11.95642 -11.67489 -11.34411 -10.93401 -10.78911 -10.44851 -10.30881 -10.01825 -9.08443 -8.06831 -6.20671 1.40132 1.42946 1.50063 1.68433 2.22635 2.44254 3.11108 3.19921 3.84208 4.05368 4.13033 4.30922 4.34441 4.45425 4.49351 4.60897 4.64674 4.69277 4.73775 4.90826 4.94069 4.97737 5.03722 5.12807 5.24382 5.26028 5.35575 5.51161 5.61377 5.64404 6.00060 6.02911 6.25147 6.34775 6.42019 6.66856 6.91545 7.37199 7.46905 8.97746 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041152 B = 0.005803 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.247779 B = 4823.553603 C = 5153.753008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.721 5.721 3 C 0.510 3.490 4 O -0.568 6.568 5 C 0.062 3.938 6 H 0.136 0.864 7 C -0.176 4.176 8 N -0.530 5.530 9 C 0.066 3.934 10 C -0.091 4.091 11 C 0.045 3.955 12 C -0.535 4.535 13 H 0.052 0.948 14 C 0.010 3.990 15 N -0.920 5.920 16 Si 0.955 3.045 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.274 1.274 20 C -0.101 4.101 21 C 0.066 3.934 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.116 0.884 25 H 0.419 0.581 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.040 0.960 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.017 0.983 32 H 0.054 0.946 33 H -0.009 1.009 34 H 0.259 0.741 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.122 -18.855 5.128 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.375 5.375 3 C 0.296 3.704 4 O -0.446 6.446 5 C -0.050 4.050 6 H 0.154 0.846 7 C -0.235 4.235 8 N -0.255 5.255 9 C -0.062 4.062 10 C -0.129 4.129 11 C 0.027 3.973 12 C -0.573 4.573 13 H 0.070 0.930 14 C -0.189 4.189 15 N -0.560 5.560 16 Si 0.780 3.220 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.199 1.199 20 C -0.139 4.139 21 C -0.061 4.061 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.134 0.866 25 H 0.256 0.744 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.059 0.941 29 H 0.034 0.966 30 H 0.089 0.911 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.009 0.991 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.838 -17.804 5.377 19.217 hybrid contribution 0.541 0.725 -0.966 1.324 sum -4.297 -17.079 4.410 18.155 Atomic orbital electron populations 1.21629 0.78995 1.04179 1.01011 1.45677 1.08142 1.08323 1.75354 1.20952 0.90598 0.83766 0.75054 1.90676 1.70995 1.33151 1.49820 1.21816 0.90994 0.90413 1.01786 0.84641 1.22368 1.02893 1.01746 0.96476 1.61834 1.11299 1.12212 1.40144 1.22144 0.99896 0.94668 0.89477 1.21368 0.98511 0.93549 0.99521 1.18661 0.92107 0.93817 0.92750 1.21598 1.36453 0.95100 1.04157 0.92985 1.25787 0.95122 1.02953 0.94989 1.70029 1.41289 1.35678 1.08974 0.85665 0.78905 0.79993 0.77411 1.19245 1.20936 1.19947 1.21552 0.99205 0.94588 0.98544 1.22121 0.86012 0.97062 1.00896 0.93558 0.93950 0.86589 0.74392 0.90601 0.88175 0.94100 0.96602 0.91079 0.96408 0.92713 0.99067 0.93165 0.93599 0.92154 0.88503 0.94738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.70 127.77 1.37 2.76 16 2 N -0.72 -13.03 5.60 -484.52 -2.71 -15.74 16 3 C 0.51 14.67 6.84 87.66 0.60 15.26 16 4 O -0.57 -23.00 13.91 -3.04 -0.04 -23.05 16 5 C 0.06 1.60 2.77 44.17 0.12 1.72 16 6 H 0.14 2.60 8.08 -2.38 -0.02 2.58 16 7 C -0.18 -3.71 8.39 71.98 0.60 -3.10 16 8 N -0.53 -19.51 4.43 -875.51 -3.88 -23.39 16 9 C 0.07 2.93 4.48 86.33 0.39 3.31 16 10 C -0.09 -4.91 5.12 30.65 0.16 -4.75 16 11 C 0.05 2.42 2.16 -11.46 -0.02 2.40 16 12 C -0.54 -31.34 8.56 25.60 0.22 -31.12 16 13 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 14 C 0.01 0.56 5.31 84.65 0.45 1.01 16 15 N -0.92 -56.28 11.37 21.44 0.24 -56.03 16 16 Si 0.95 45.83 29.54 68.60 2.03 47.86 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 20 C -0.10 -4.37 5.32 30.65 0.16 -4.20 16 21 C 0.07 2.27 5.02 86.32 0.43 2.70 16 22 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 25 H 0.42 4.03 8.24 -92.71 -0.76 3.27 16 26 H 0.08 1.55 6.65 -2.39 -0.02 1.54 16 27 H 0.10 1.26 7.55 -2.39 -0.02 1.24 16 28 H 0.04 1.09 6.52 -2.39 -0.02 1.07 16 29 H 0.02 0.70 6.62 -2.38 -0.02 0.69 16 30 H 0.07 3.35 5.31 -2.39 -0.01 3.33 16 31 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.05 3.30 6.17 -2.39 -0.01 3.28 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.10 2.59 8.08 -2.39 -0.02 2.57 16 38 H 0.03 1.15 6.73 -2.39 -0.02 1.13 16 Total: -1.00 -75.75 293.86 0.39 -75.36 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.28 Total: 9.01 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 4.48 Total: -14.01 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -6.35 Total: -95.17 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.04 Total: -23.05 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -75.75 0.39 -75.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397166425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.098 kcal (2) G-P(sol) polarization free energy of solvation -75.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds