Wall clock time and date at job start Mon Mar 30 2020 03:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34782 * 120.00445 * 2 1 4 4 O 1.21274 * 119.99626 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00369 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.46795 * 31.84732 * 5 3 2 7 7 C 1.52999 * 109.47080 * 271.84704 * 5 3 2 8 8 N 1.46899 * 109.46992 * 151.84226 * 5 3 2 9 9 C 1.46844 * 111.00305 * 306.50330 * 8 5 3 10 10 C 1.53035 * 109.52398 * 185.83845 * 9 8 5 11 11 C 1.53119 * 109.27806 * 300.81944 * 10 9 8 12 12 C 1.50699 * 109.52249 * 177.55620 * 11 10 9 13 13 H 1.08004 * 120.00222 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00023 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99692 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00030 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47124 * 90.00509 * 16 14 12 18 18 H 1.48500 * 109.47019 * 210.00558 * 16 14 12 19 19 H 1.48501 * 109.47241 * 330.00260 * 16 14 12 20 20 C 1.53121 * 109.16192 * 57.65470 * 11 10 9 21 21 C 1.46851 * 110.99609 * 70.71088 * 8 5 3 22 22 H 1.08998 * 109.46890 * 59.99880 * 1 2 3 23 23 H 1.08997 * 109.46966 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46880 * 299.99655 * 1 2 3 25 25 H 0.97004 * 120.00333 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46764 * 179.97438 * 7 5 3 27 27 H 1.08994 * 109.47113 * 299.99563 * 7 5 3 28 28 H 1.08998 * 109.47416 * 60.00126 * 7 5 3 29 29 H 1.08995 * 109.46457 * 65.81956 * 9 8 5 30 30 H 1.09007 * 109.45033 * 305.84555 * 9 8 5 31 31 H 1.09003 * 109.50317 * 180.87472 * 10 9 8 32 32 H 1.09009 * 109.50186 * 60.76009 * 10 9 8 33 33 H 1.08992 * 109.52145 * 297.74953 * 11 10 9 34 34 H 0.97009 * 119.99876 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.50505 * 62.28056 * 20 11 10 36 36 H 1.08989 * 109.50593 * 182.40546 * 20 11 10 37 37 H 1.09000 * 109.46263 * 294.17497 * 21 8 5 38 38 H 1.09004 * 109.46222 * 54.14195 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6460 1.1672 0.0006 6 1 4.0095 0.2941 -0.5414 7 6 4.1554 1.1210 1.4425 8 7 4.1359 2.3881 -0.6531 9 6 3.5430 2.5449 -1.9873 10 6 4.1827 3.7423 -2.6937 11 6 3.9497 5.0050 -1.8596 12 6 4.6288 6.1772 -2.5198 13 1 5.1723 6.0369 -3.4426 14 6 4.5555 7.4289 -1.9465 15 7 3.8933 7.5999 -0.8232 16 14 5.3966 8.8820 -2.7653 17 1 4.4532 9.5321 -3.7100 18 1 5.8131 9.8610 -1.7293 19 1 6.5924 8.4080 -3.5074 20 6 4.5339 4.7974 -0.4595 21 6 3.8840 3.5694 0.1821 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.9500 -0.8400 -0.0004 26 1 5.2454 1.1205 1.4429 27 1 3.7920 1.9941 1.9844 28 1 3.7919 0.2150 1.9275 29 1 2.4701 2.7109 -1.8907 30 1 3.7196 1.6417 -2.5715 31 1 3.7314 3.8679 -3.6780 32 1 5.2536 3.5708 -2.8030 33 1 2.8798 5.1985 -1.7828 34 1 3.8420 8.4805 -0.4196 35 1 5.6103 4.6424 -0.5336 36 1 4.3335 5.6767 0.1525 37 1 2.8094 3.7306 0.2685 38 1 4.3081 3.4104 1.1736 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397166426.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:34 Heat of formation + Delta-G solvation = -35.929267 kcal Electronic energy + Delta-G solvation = -18293.359366 eV Core-core repulsion = 15556.580098 eV Total energy + Delta-G solvation = -2736.779268 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.22874 -37.46705 -34.52970 -34.24305 -32.01431 -29.75618 -29.36027 -27.01781 -25.51642 -23.32490 -21.86350 -21.35204 -19.97430 -18.66369 -16.96288 -16.35561 -16.07509 -15.17887 -14.87621 -14.33834 -14.12996 -14.05051 -13.32238 -12.90865 -12.62949 -12.44963 -12.33994 -12.10545 -11.95743 -11.82579 -11.22994 -10.88154 -10.85498 -10.62360 -10.36364 -10.16103 -9.87866 -9.80802 -9.29388 -9.09218 -8.83038 -8.54593 -8.17450 -7.52790 -5.85529 -3.90969 2.76998 3.28422 3.38116 3.44354 3.48004 4.39337 4.54184 4.85777 5.13224 5.16191 5.26893 5.43404 5.44092 5.59826 5.71148 5.82841 5.91804 6.09892 6.18555 6.26643 6.35532 6.47849 6.61810 6.75508 6.85658 7.05075 7.18297 7.28792 7.42494 7.58856 7.71738 7.77245 7.93780 8.20474 8.29694 8.37645 8.60949 9.13075 9.72546 11.20510 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042235 B = 0.005915 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.799529 B = 4732.594868 C = 4806.782888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.742 5.742 3 C 0.481 3.519 4 O -0.521 6.521 5 C 0.064 3.936 6 H 0.094 0.906 7 C -0.142 4.142 8 N -0.505 5.505 9 C 0.048 3.952 10 C -0.103 4.103 11 C 0.048 3.952 12 C -0.509 4.509 13 H 0.053 0.947 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.101 4.101 21 C 0.036 3.964 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.398 0.602 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.022 0.978 34 H 0.258 0.742 35 H 0.038 0.962 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 -16.970 3.601 17.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.395 5.395 3 C 0.266 3.734 4 O -0.396 6.396 5 C -0.049 4.049 6 H 0.112 0.888 7 C -0.200 4.200 8 N -0.229 5.229 9 C -0.079 4.079 10 C -0.141 4.141 11 C 0.030 3.970 12 C -0.548 4.548 13 H 0.071 0.929 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.717 3.283 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.140 4.140 21 C -0.091 4.091 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.231 0.769 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.684 -16.059 3.666 16.689 hybrid contribution -0.334 0.374 -0.356 0.615 sum -3.018 -15.685 3.310 16.312 Atomic orbital electron populations 1.21479 0.80452 1.01621 1.02238 1.46129 1.07449 1.09017 1.76947 1.22499 0.91985 0.83575 0.75347 1.90718 1.70416 1.30726 1.47748 1.21961 0.87854 0.97217 0.97911 0.88819 1.21848 1.02627 1.02142 0.93348 1.62570 1.55371 1.01773 1.03214 1.22274 0.97762 0.98830 0.89065 1.21638 0.99540 0.94950 0.97940 1.18668 0.96414 0.90562 0.91381 1.21226 1.32700 0.92777 1.08070 0.92867 1.24972 0.95430 0.98654 0.95002 1.69902 1.42094 1.22586 1.18410 0.86653 0.79862 0.82689 0.79110 1.20880 1.21351 1.20005 1.21632 0.97863 0.94826 0.99645 1.22647 1.01148 0.90230 0.95075 0.92433 0.91117 0.92499 0.76884 0.90487 0.91294 0.92446 0.93989 0.93116 0.93346 0.92683 0.95984 0.93198 0.94293 0.89074 0.92198 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 10.70 59.85 0.64 1.50 16 2 N -0.74 -8.10 5.71 -67.08 -0.38 -8.49 16 3 C 0.48 7.36 6.02 -10.98 -0.07 7.30 16 4 O -0.52 -10.55 12.45 5.56 0.07 -10.48 16 5 C 0.06 0.91 2.95 -68.87 -0.20 0.71 16 6 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 7 C -0.14 -1.74 8.57 37.16 0.32 -1.42 16 8 N -0.51 -9.45 4.73 -228.08 -1.08 -10.53 16 9 C 0.05 0.95 4.89 -3.84 -0.02 0.93 16 10 C -0.10 -2.32 5.32 -26.65 -0.14 -2.46 16 11 C 0.05 1.29 2.16 -91.65 -0.20 1.09 16 12 C -0.51 -14.65 8.56 -34.44 -0.29 -14.94 16 13 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 14 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 15 N -0.89 -26.55 11.37 55.43 0.63 -25.92 16 16 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.10 -2.55 5.12 -26.65 -0.14 -2.69 16 21 C 0.04 0.76 4.62 -3.83 -0.02 0.75 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.40 2.93 8.83 -40.82 -0.36 2.57 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.97 6.19 -51.93 -0.32 0.65 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.91 6.09 -51.93 -0.32 0.60 16 30 H 0.05 0.87 8.12 -51.93 -0.42 0.44 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.05 1.24 8.14 -51.92 -0.42 0.81 16 33 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 2.55 6.17 -51.93 -0.32 2.23 16 37 H 0.06 1.43 5.67 -51.93 -0.29 1.14 16 38 H 0.06 1.08 5.82 -51.93 -0.30 0.78 16 LS Contribution 293.71 15.07 4.43 4.43 Total: -1.00 -32.99 293.71 -7.68 -40.67 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.11 Total: 0.95 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.21 Total: -7.61 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.83 Total: -44.94 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.99 -7.68 -40.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397166426.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.736 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds