Wall clock time and date at job start Mon Mar 30 2020 03:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34782 * 120.00445 * 2 1 4 4 O 1.21274 * 119.99626 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00369 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.46795 * 31.84732 * 5 3 2 7 7 C 1.52999 * 109.47080 * 271.84704 * 5 3 2 8 8 N 1.46899 * 109.46992 * 151.84226 * 5 3 2 9 9 C 1.46844 * 111.00305 * 306.50330 * 8 5 3 10 10 C 1.53035 * 109.52398 * 185.83845 * 9 8 5 11 11 C 1.53119 * 109.27806 * 300.81944 * 10 9 8 12 12 C 1.50699 * 109.52249 * 177.55620 * 11 10 9 13 13 H 1.08004 * 120.00222 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00023 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99692 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00030 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47124 * 90.00509 * 16 14 12 18 18 H 1.48500 * 109.47019 * 210.00558 * 16 14 12 19 19 H 1.48501 * 109.47241 * 330.00260 * 16 14 12 20 20 C 1.53121 * 109.16192 * 57.65470 * 11 10 9 21 21 C 1.46851 * 110.99609 * 70.71088 * 8 5 3 22 22 H 1.08998 * 109.46890 * 59.99880 * 1 2 3 23 23 H 1.08997 * 109.46966 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46880 * 299.99655 * 1 2 3 25 25 H 0.97004 * 120.00333 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46764 * 179.97438 * 7 5 3 27 27 H 1.08994 * 109.47113 * 299.99563 * 7 5 3 28 28 H 1.08998 * 109.47416 * 60.00126 * 7 5 3 29 29 H 1.08995 * 109.46457 * 65.81956 * 9 8 5 30 30 H 1.09007 * 109.45033 * 305.84555 * 9 8 5 31 31 H 1.09003 * 109.50317 * 180.87472 * 10 9 8 32 32 H 1.09009 * 109.50186 * 60.76009 * 10 9 8 33 33 H 1.08992 * 109.52145 * 297.74953 * 11 10 9 34 34 H 0.97009 * 119.99876 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.50505 * 62.28056 * 20 11 10 36 36 H 1.08989 * 109.50593 * 182.40546 * 20 11 10 37 37 H 1.09000 * 109.46263 * 294.17497 * 21 8 5 38 38 H 1.09004 * 109.46222 * 54.14195 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6460 1.1672 0.0006 6 1 4.0095 0.2941 -0.5414 7 6 4.1554 1.1210 1.4425 8 7 4.1359 2.3881 -0.6531 9 6 3.5430 2.5449 -1.9873 10 6 4.1827 3.7423 -2.6937 11 6 3.9497 5.0050 -1.8596 12 6 4.6288 6.1772 -2.5198 13 1 5.1723 6.0369 -3.4426 14 6 4.5555 7.4289 -1.9465 15 7 3.8933 7.5999 -0.8232 16 14 5.3966 8.8820 -2.7653 17 1 4.4532 9.5321 -3.7100 18 1 5.8131 9.8610 -1.7293 19 1 6.5924 8.4080 -3.5074 20 6 4.5339 4.7974 -0.4595 21 6 3.8840 3.5694 0.1821 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.9500 -0.8400 -0.0004 26 1 5.2454 1.1205 1.4429 27 1 3.7920 1.9941 1.9844 28 1 3.7919 0.2150 1.9275 29 1 2.4701 2.7109 -1.8907 30 1 3.7196 1.6417 -2.5715 31 1 3.7314 3.8679 -3.6780 32 1 5.2536 3.5708 -2.8030 33 1 2.8798 5.1985 -1.7828 34 1 3.8420 8.4805 -0.4196 35 1 5.6103 4.6424 -0.5336 36 1 4.3335 5.6767 0.1525 37 1 2.8094 3.7306 0.2685 38 1 4.3081 3.4104 1.1736 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397166426.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:33 Heat of formation + Delta-G solvation = -61.322347 kcal Electronic energy + Delta-G solvation = -18294.460493 eV Core-core repulsion = 15556.580098 eV Total energy + Delta-G solvation = -2737.880395 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.52226 -39.02242 -36.01281 -35.60869 -33.87888 -31.55761 -30.93692 -27.97177 -27.44101 -24.80018 -23.64963 -22.88878 -21.18882 -20.48123 -18.49481 -18.13810 -17.45830 -16.59737 -16.28606 -15.93814 -15.66799 -15.35605 -14.88219 -14.43692 -14.37579 -14.06600 -13.69385 -13.39658 -13.11754 -13.10189 -12.88415 -12.67924 -12.56862 -12.24449 -12.20520 -11.94961 -11.77794 -11.33973 -11.23125 -10.79803 -10.60689 -10.37019 -10.11534 -9.05197 -8.06314 -6.21457 1.40666 1.41598 1.52634 1.60788 2.32048 2.44330 2.98560 3.19764 3.88491 3.99570 4.16092 4.26100 4.37598 4.44120 4.51387 4.58343 4.69159 4.75486 4.82091 4.89070 4.91871 4.96132 4.98237 5.18184 5.23927 5.26713 5.38441 5.51361 5.58627 5.62657 5.99216 6.00752 6.21075 6.27503 6.40442 6.60023 6.91186 7.31773 7.46421 8.98589 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042235 B = 0.005915 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.799529 B = 4732.594868 C = 4806.782888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.720 5.720 3 C 0.476 3.524 4 O -0.580 6.580 5 C 0.061 3.939 6 H 0.136 0.864 7 C -0.138 4.138 8 N -0.506 5.506 9 C 0.057 3.943 10 C -0.097 4.097 11 C 0.045 3.955 12 C -0.534 4.534 13 H 0.054 0.946 14 C 0.008 3.992 15 N -0.921 5.921 16 Si 0.959 3.041 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.265 1.265 20 C -0.093 4.093 21 C 0.052 3.948 22 H 0.038 0.962 23 H 0.116 0.884 24 H 0.043 0.957 25 H 0.420 0.580 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.093 0.907 29 H 0.017 0.983 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.059 0.941 33 H -0.026 1.026 34 H 0.259 0.741 35 H 0.034 0.966 36 H 0.055 0.945 37 H 0.030 0.970 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 -19.586 3.332 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.374 5.374 3 C 0.262 3.738 4 O -0.460 6.460 5 C -0.052 4.052 6 H 0.154 0.846 7 C -0.196 4.196 8 N -0.230 5.230 9 C -0.070 4.070 10 C -0.135 4.135 11 C 0.027 3.973 12 C -0.572 4.572 13 H 0.072 0.928 14 C -0.190 4.190 15 N -0.561 5.561 16 Si 0.784 3.216 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.131 4.131 21 C -0.075 4.075 22 H 0.057 0.943 23 H 0.134 0.866 24 H 0.062 0.938 25 H 0.257 0.743 26 H 0.105 0.895 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.035 0.965 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.078 0.922 33 H -0.008 1.008 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.619 -18.757 3.394 19.130 hybrid contribution -0.732 1.103 -0.251 1.348 sum -2.351 -17.654 3.143 18.085 Atomic orbital electron populations 1.21607 0.79615 1.04078 1.00732 1.45923 1.08047 1.08741 1.74686 1.22621 0.92535 0.83795 0.74830 1.90721 1.71463 1.33089 1.50704 1.22226 0.87401 0.96071 0.99451 0.84632 1.21856 1.03186 1.02783 0.91745 1.62486 1.55703 1.02152 1.02627 1.22137 0.95921 0.98955 0.90016 1.21507 1.00016 0.94329 0.97607 1.18624 0.93222 0.92406 0.93086 1.21603 1.33115 0.94072 1.08368 0.92792 1.25838 0.96014 1.01619 0.95532 1.70074 1.43076 1.23221 1.19700 0.85549 0.78978 0.78909 0.78167 1.20297 1.20780 1.18918 1.21397 0.97561 0.95565 0.98588 1.22296 0.98836 0.90226 0.96141 0.94280 0.86574 0.93812 0.74271 0.89517 0.93880 0.88814 0.96455 0.89221 0.93250 0.92244 1.00799 0.93164 0.94734 0.92608 0.95139 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 10.70 127.77 1.37 2.86 16 2 N -0.72 -13.58 5.71 -484.53 -2.77 -16.35 16 3 C 0.48 13.85 6.02 87.66 0.53 14.37 16 4 O -0.58 -24.06 12.45 -3.01 -0.04 -24.09 16 5 C 0.06 1.56 2.95 44.17 0.13 1.69 16 6 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 7 C -0.14 -2.96 8.57 71.98 0.62 -2.34 16 8 N -0.51 -18.30 4.73 -875.50 -4.14 -22.44 16 9 C 0.06 2.22 4.89 86.33 0.42 2.64 16 10 C -0.10 -4.40 5.32 30.65 0.16 -4.24 16 11 C 0.05 2.52 2.16 -11.46 -0.02 2.49 16 12 C -0.53 -31.59 8.56 25.60 0.22 -31.38 16 13 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 14 C 0.01 0.47 5.31 84.66 0.45 0.92 16 15 N -0.92 -57.09 11.37 21.45 0.24 -56.85 16 16 Si 0.96 45.87 29.54 68.60 2.03 47.89 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 20 C -0.09 -4.87 5.12 30.65 0.16 -4.71 16 21 C 0.05 2.30 4.62 86.33 0.40 2.70 16 22 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.12 1.00 8.14 -2.39 -0.02 0.99 16 24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.42 4.23 8.83 -92.71 -0.82 3.41 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.04 1.15 6.19 -2.39 -0.01 1.14 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.02 0.76 6.09 -2.39 -0.01 0.75 16 30 H 0.09 2.78 8.12 -2.38 -0.02 2.76 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 33 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 34 H 0.26 15.22 8.31 -92.70 -0.77 14.44 16 35 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 3.30 6.17 -2.39 -0.01 3.28 16 37 H 0.03 1.54 5.67 -2.39 -0.01 1.53 16 38 H 0.08 2.96 5.82 -2.38 -0.01 2.95 16 Total: -1.00 -76.66 293.71 -0.02 -76.69 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.22 Total: 10.15 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 4.43 Total: -15.00 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -6.66 Total: -95.64 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.04 Total: -24.09 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -76.66 -0.02 -76.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397166426.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.366 kcal (2) G-P(sol) polarization free energy of solvation -76.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds