Wall clock time and date at job start Mon Mar 30 2020 03:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46479 * 2 1 4 4 C 1.52999 * 109.47088 * 119.99792 * 2 1 3 5 5 N 1.46906 * 109.46916 * 297.78089 * 4 2 1 6 6 C 1.46847 * 110.99663 * 169.63967 * 5 4 2 7 7 C 1.53033 * 109.52451 * 185.84113 * 6 5 4 8 8 C 1.53122 * 109.27919 * 300.82264 * 7 6 5 9 9 C 1.50703 * 109.57876 * 177.58718 * 8 7 6 10 10 H 1.07995 * 119.99980 * 245.67273 * 9 8 7 11 11 C 1.37878 * 119.99308 * 65.67030 * 9 8 7 12 12 N 1.31508 * 120.00706 * 8.95820 * 11 9 8 13 13 Si 1.86809 * 119.99359 * 188.95941 * 11 9 8 14 14 H 1.48499 * 109.46839 * 94.98996 * 13 11 9 15 15 H 1.48501 * 109.46701 * 214.98747 * 13 11 9 16 16 H 1.48490 * 109.47202 * 334.98706 * 13 11 9 17 17 C 1.53123 * 109.16019 * 57.64894 * 8 7 6 18 18 C 1.46846 * 111.00226 * 293.84974 * 5 4 2 19 19 C 1.50695 * 109.47156 * 239.99919 * 2 1 3 20 20 N 1.34776 * 120.00223 * 60.00299 * 19 2 1 21 21 O 1.21280 * 119.99824 * 239.99281 * 19 2 1 22 22 H 1.09003 * 109.46831 * 184.79058 * 1 2 3 23 23 H 1.08992 * 109.47190 * 304.78868 * 1 2 3 24 24 H 1.08996 * 109.46837 * 64.79187 * 1 2 3 25 25 H 1.08993 * 109.47379 * 57.78294 * 4 2 1 26 26 H 1.09001 * 109.47317 * 177.78721 * 4 2 1 27 27 H 1.08996 * 109.46694 * 305.85922 * 6 5 4 28 28 H 1.09006 * 109.46475 * 65.82708 * 6 5 4 29 29 H 1.08999 * 109.50998 * 180.88335 * 7 6 5 30 30 H 1.09004 * 109.50297 * 60.75978 * 7 6 5 31 31 H 1.09000 * 109.52382 * 297.75141 * 8 7 6 32 32 H 0.96999 * 120.00219 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.50303 * 182.40586 * 17 8 7 34 34 H 1.09004 * 109.52924 * 62.31011 * 17 8 7 35 35 H 1.09000 * 109.46371 * 294.17639 * 18 5 4 36 36 H 1.09000 * 109.45849 * 54.15848 * 18 5 4 37 37 H 0.96999 * 119.99942 * 180.02562 * 20 19 2 38 38 H 0.97004 * 119.99889 * 359.71941 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5946 0.0017 2.4481 6 6 1.8508 -0.7841 3.6619 7 6 1.2453 -0.0687 4.8716 8 6 1.8703 1.3232 5.0008 9 6 1.2363 2.0564 6.1547 10 1 0.6412 2.9389 5.9722 11 6 1.4160 1.6002 7.4434 12 7 2.2777 0.6369 7.6860 13 14 0.4351 2.3508 8.8450 14 1 -0.7740 1.5271 9.0996 15 1 1.2737 2.3910 10.0699 16 1 0.0262 3.7307 8.4796 17 6 1.6313 2.1037 3.7053 18 6 2.2255 1.3252 2.5294 19 6 2.0324 -0.7104 -1.2304 20 7 1.7069 -0.2500 -2.4545 21 8 2.7297 -1.6964 -1.1191 22 1 -0.3633 -1.0241 0.0858 23 1 -0.3633 0.5863 0.8439 24 1 -0.3633 0.4377 -0.9298 25 1 1.6447 -1.7367 1.2694 26 1 3.1293 -0.7557 1.2297 27 1 1.3975 -1.7700 3.5587 28 1 2.9260 -0.8921 3.8045 29 1 1.4491 -0.6443 5.7745 30 1 0.1680 0.0274 4.7360 31 1 2.9419 1.2265 5.1752 32 1 2.4038 0.3158 8.5925 33 1 2.1108 3.0800 3.7749 34 1 0.5601 2.2344 3.5510 35 1 3.2990 1.2074 2.6773 36 1 2.0442 1.8714 1.6037 37 1 2.0299 -0.7075 -3.2465 38 1 1.1459 0.5364 -2.5436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397211544.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:47 Heat of formation + Delta-G solvation = -58.080201 kcal Electronic energy + Delta-G solvation = -17763.812180 eV Core-core repulsion = 15026.072376 eV Total energy + Delta-G solvation = -2737.739805 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.88179 -38.12842 -34.76588 -33.84479 -32.50800 -30.72857 -29.71462 -26.60185 -25.01664 -23.25188 -22.13177 -21.25162 -19.57951 -18.57078 -17.46469 -16.93795 -16.26064 -15.33167 -14.98857 -14.45007 -14.22778 -14.08903 -13.52721 -13.22687 -12.66380 -12.57043 -12.28108 -12.14333 -11.94427 -11.29991 -11.16207 -10.95771 -10.84126 -10.74011 -10.39138 -10.19456 -10.03509 -9.84784 -9.82265 -9.40892 -8.85431 -8.71451 -8.26434 -7.73366 -5.96860 -3.98067 2.57649 3.33556 3.38547 3.40906 3.43692 4.46110 4.49170 4.75671 4.92806 5.13097 5.35198 5.35581 5.70447 5.72885 5.80376 5.93227 6.01383 6.11501 6.16986 6.26188 6.33184 6.38244 6.58887 6.62220 6.65899 6.85341 7.08018 7.15189 7.18566 7.40293 7.62185 7.70524 7.85155 8.05726 8.09249 8.16186 8.51029 9.06116 9.65133 11.12244 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057421 B = 0.004845 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.509110 B = 5778.041165 C = 5948.900815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 H 0.098 0.902 4 C 0.073 3.927 5 N -0.533 5.533 6 C 0.059 3.941 7 C -0.098 4.098 8 C 0.045 3.955 9 C -0.512 4.512 10 H 0.054 0.946 11 C 0.063 3.937 12 N -0.890 5.890 13 Si 0.886 3.114 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.275 1.275 17 C -0.105 4.105 18 C 0.055 3.945 19 C 0.522 3.478 20 N -0.858 5.858 21 O -0.545 6.545 22 H 0.057 0.943 23 H 0.084 0.916 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.027 0.973 32 H 0.259 0.741 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.024 0.976 36 H 0.057 0.943 37 H 0.398 0.602 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 -0.145 -16.812 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 H 0.116 0.884 4 C -0.056 4.056 5 N -0.258 5.258 6 C -0.069 4.069 7 C -0.137 4.137 8 C 0.027 3.973 9 C -0.551 4.551 10 H 0.072 0.928 11 C -0.138 4.138 12 N -0.529 5.529 13 Si 0.714 3.286 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.143 4.143 18 C -0.072 4.072 19 C 0.307 3.693 20 N -0.422 5.422 21 O -0.422 6.422 22 H 0.076 0.924 23 H 0.103 0.897 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.228 0.772 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.818 -0.800 -16.406 16.666 hybrid contribution 0.267 0.423 0.439 0.666 sum -2.551 -0.377 -15.967 16.174 Atomic orbital electron populations 1.21646 0.91995 1.02976 1.02270 1.21322 0.98600 1.00798 0.92349 0.88366 1.21817 0.97820 0.97320 0.88642 1.61965 1.58531 1.03374 1.01887 1.22224 0.98282 0.95976 0.90369 1.21593 0.98792 0.98876 0.94412 1.18701 0.96681 0.91255 0.90670 1.21184 1.31296 1.11527 0.91044 0.92754 1.24962 0.94918 0.95332 0.98613 1.69963 1.33596 1.28852 1.20453 0.86685 0.80297 0.79581 0.82068 1.20755 1.21432 1.19954 1.21663 0.99914 0.97630 0.95052 1.22203 0.95921 0.90050 0.99071 1.20843 0.79005 0.84070 0.85360 1.43902 1.56103 1.34104 1.08082 1.90736 1.37886 1.26511 1.87029 0.92431 0.89701 0.93376 0.90586 0.94649 0.92540 0.95725 0.90721 0.93550 0.95463 0.93136 0.93195 0.92575 0.95742 0.92458 0.77184 0.77059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 8.93 37.16 0.33 -1.05 16 2 C -0.11 -1.30 2.62 -91.77 -0.24 -1.54 16 3 H 0.10 1.08 6.34 -51.93 -0.33 0.75 16 4 C 0.07 1.12 3.68 -3.82 -0.01 1.10 16 5 N -0.53 -9.23 4.08 -234.67 -0.96 -10.18 16 6 C 0.06 1.16 5.46 -3.84 -0.02 1.14 16 7 C -0.10 -2.29 5.19 -26.65 -0.14 -2.43 16 8 C 0.05 1.13 2.03 -91.64 -0.19 0.94 16 9 C -0.51 -14.05 8.49 -34.44 -0.29 -14.34 16 10 H 0.05 1.48 7.77 -52.49 -0.41 1.07 16 11 C 0.06 1.75 5.23 -17.82 -0.09 1.66 16 12 N -0.89 -25.71 12.17 55.43 0.67 -25.03 16 13 Si 0.89 21.32 29.55 -169.99 -5.02 16.30 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 17 C -0.10 -2.15 5.32 -26.65 -0.14 -2.29 16 18 C 0.06 0.97 5.30 -3.84 -0.02 0.95 16 19 C 0.52 6.36 7.43 -10.99 -0.08 6.28 16 20 N -0.86 -6.55 8.74 31.22 0.27 -6.27 16 21 O -0.55 -9.03 16.81 5.56 0.09 -8.94 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.08 1.03 7.81 -51.93 -0.41 0.62 16 24 H 0.05 0.37 7.43 -51.93 -0.39 -0.02 16 25 H 0.08 1.20 7.98 -51.93 -0.41 0.79 16 26 H 0.04 0.59 8.02 -51.93 -0.42 0.17 16 27 H 0.06 1.03 8.01 -51.93 -0.42 0.62 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.93 6.97 -51.93 -0.36 1.57 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.84 6.19 -51.93 -0.32 0.52 16 37 H 0.40 2.58 8.93 -40.82 -0.36 2.22 16 38 H 0.40 1.93 8.18 -40.82 -0.33 1.60 16 LS Contribution 301.21 15.07 4.54 4.54 Total: -1.00 -31.25 301.21 -7.54 -38.79 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.25 Total: 0.39 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -0.90 Total: -9.59 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -0.01 Total: -41.49 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.25 -7.54 -38.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397211544.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.291 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds