Wall clock time and date at job start Mon Mar 30 2020 03:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46479 * 2 1 4 4 C 1.52999 * 109.47088 * 119.99792 * 2 1 3 5 5 N 1.46906 * 109.46916 * 297.78089 * 4 2 1 6 6 C 1.46847 * 110.99663 * 169.63967 * 5 4 2 7 7 C 1.53033 * 109.52451 * 185.84113 * 6 5 4 8 8 C 1.53122 * 109.27919 * 300.82264 * 7 6 5 9 9 C 1.50703 * 109.57876 * 177.58718 * 8 7 6 10 10 H 1.07995 * 119.99980 * 245.67273 * 9 8 7 11 11 C 1.37878 * 119.99308 * 65.67030 * 9 8 7 12 12 N 1.31508 * 120.00706 * 8.95820 * 11 9 8 13 13 Si 1.86809 * 119.99359 * 188.95941 * 11 9 8 14 14 H 1.48499 * 109.46839 * 94.98996 * 13 11 9 15 15 H 1.48501 * 109.46701 * 214.98747 * 13 11 9 16 16 H 1.48490 * 109.47202 * 334.98706 * 13 11 9 17 17 C 1.53123 * 109.16019 * 57.64894 * 8 7 6 18 18 C 1.46846 * 111.00226 * 293.84974 * 5 4 2 19 19 C 1.50695 * 109.47156 * 239.99919 * 2 1 3 20 20 N 1.34776 * 120.00223 * 60.00299 * 19 2 1 21 21 O 1.21280 * 119.99824 * 239.99281 * 19 2 1 22 22 H 1.09003 * 109.46831 * 184.79058 * 1 2 3 23 23 H 1.08992 * 109.47190 * 304.78868 * 1 2 3 24 24 H 1.08996 * 109.46837 * 64.79187 * 1 2 3 25 25 H 1.08993 * 109.47379 * 57.78294 * 4 2 1 26 26 H 1.09001 * 109.47317 * 177.78721 * 4 2 1 27 27 H 1.08996 * 109.46694 * 305.85922 * 6 5 4 28 28 H 1.09006 * 109.46475 * 65.82708 * 6 5 4 29 29 H 1.08999 * 109.50998 * 180.88335 * 7 6 5 30 30 H 1.09004 * 109.50297 * 60.75978 * 7 6 5 31 31 H 1.09000 * 109.52382 * 297.75141 * 8 7 6 32 32 H 0.96999 * 120.00219 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.50303 * 182.40586 * 17 8 7 34 34 H 1.09004 * 109.52924 * 62.31011 * 17 8 7 35 35 H 1.09000 * 109.46371 * 294.17639 * 18 5 4 36 36 H 1.09000 * 109.45849 * 54.15848 * 18 5 4 37 37 H 0.96999 * 119.99942 * 180.02562 * 20 19 2 38 38 H 0.97004 * 119.99889 * 359.71941 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5946 0.0017 2.4481 6 6 1.8508 -0.7841 3.6619 7 6 1.2453 -0.0687 4.8716 8 6 1.8703 1.3232 5.0008 9 6 1.2363 2.0564 6.1547 10 1 0.6412 2.9389 5.9722 11 6 1.4160 1.6002 7.4434 12 7 2.2777 0.6369 7.6860 13 14 0.4351 2.3508 8.8450 14 1 -0.7740 1.5271 9.0996 15 1 1.2737 2.3910 10.0699 16 1 0.0262 3.7307 8.4796 17 6 1.6313 2.1037 3.7053 18 6 2.2255 1.3252 2.5294 19 6 2.0324 -0.7104 -1.2304 20 7 1.7069 -0.2500 -2.4545 21 8 2.7297 -1.6964 -1.1191 22 1 -0.3633 -1.0241 0.0858 23 1 -0.3633 0.5863 0.8439 24 1 -0.3633 0.4377 -0.9298 25 1 1.6447 -1.7367 1.2694 26 1 3.1293 -0.7557 1.2297 27 1 1.3975 -1.7700 3.5587 28 1 2.9260 -0.8921 3.8045 29 1 1.4491 -0.6443 5.7745 30 1 0.1680 0.0274 4.7360 31 1 2.9419 1.2265 5.1752 32 1 2.4038 0.3158 8.5925 33 1 2.1108 3.0800 3.7749 34 1 0.5601 2.2344 3.5510 35 1 3.2990 1.2074 2.6773 36 1 2.0442 1.8714 1.6037 37 1 2.0299 -0.7075 -3.2465 38 1 1.1459 0.5364 -2.5436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397211544.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:47 Heat of formation + Delta-G solvation = -81.298797 kcal Electronic energy + Delta-G solvation = -17764.819014 eV Core-core repulsion = 15026.072376 eV Total energy + Delta-G solvation = -2738.746638 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.92775 -39.61243 -36.27268 -34.91263 -34.04420 -32.31779 -31.37183 -28.17411 -26.40944 -24.64972 -23.74014 -22.79324 -20.62569 -20.28755 -18.52345 -18.21553 -17.82337 -16.69068 -16.35760 -16.09432 -15.66631 -15.29735 -14.85638 -14.72241 -14.27342 -14.10110 -14.04921 -13.30050 -13.01620 -12.99477 -12.82001 -12.70208 -12.30770 -12.18633 -12.01289 -11.87712 -11.78822 -11.31657 -10.87001 -10.67925 -10.64999 -10.61150 -10.38983 -9.20918 -8.09721 -6.18325 1.42123 1.43725 1.53562 1.65080 2.45774 2.50528 3.17418 3.20663 3.73901 3.96871 4.14369 4.22863 4.33217 4.41263 4.48771 4.53728 4.72619 4.79679 4.85968 4.88554 5.01141 5.02998 5.09452 5.16299 5.27151 5.35730 5.50771 5.54117 5.65586 5.93405 5.97813 6.01592 6.23029 6.30231 6.42054 6.48402 6.94716 7.37722 7.48691 8.98765 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057421 B = 0.004845 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.509110 B = 5778.041165 C = 5948.900815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.116 0.884 4 C 0.075 3.925 5 N -0.526 5.526 6 C 0.067 3.933 7 C -0.087 4.087 8 C 0.040 3.960 9 C -0.531 4.531 10 H 0.054 0.946 11 C 0.013 3.987 12 N -0.922 5.922 13 Si 0.950 3.050 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.266 1.266 17 C -0.097 4.097 18 C 0.060 3.940 19 C 0.523 3.477 20 N -0.833 5.833 21 O -0.597 6.597 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.020 0.980 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.040 0.960 30 H 0.043 0.957 31 H -0.012 1.012 32 H 0.259 0.741 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.013 0.987 36 H 0.098 0.902 37 H 0.407 0.593 38 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 1.071 -18.792 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.123 4.123 3 H 0.134 0.866 4 C -0.053 4.053 5 N -0.250 5.250 6 C -0.061 4.061 7 C -0.126 4.126 8 C 0.022 3.978 9 C -0.569 4.569 10 H 0.073 0.927 11 C -0.186 4.186 12 N -0.561 5.561 13 Si 0.776 3.224 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.190 1.190 17 C -0.135 4.135 18 C -0.067 4.067 19 C 0.308 3.692 20 N -0.397 5.397 21 O -0.477 6.477 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.027 0.973 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.006 0.994 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.116 0.884 37 H 0.239 0.761 38 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.263 0.460 -18.439 18.931 hybrid contribution 0.718 0.064 1.016 1.246 sum -3.545 0.524 -17.423 17.788 Atomic orbital electron populations 1.21627 0.90544 1.02590 1.03665 1.21248 0.99609 1.00941 0.90549 0.86629 1.21808 0.96956 0.97386 0.89177 1.61948 1.58355 1.03196 1.01518 1.22018 0.97045 0.96634 0.90360 1.21353 0.98544 0.98008 0.94688 1.18691 0.94019 0.92621 0.92492 1.21582 1.31300 1.11740 0.92257 0.92734 1.25748 0.95750 0.95851 1.01222 1.70098 1.34931 1.30208 1.20913 0.85664 0.78792 0.79121 0.78822 1.20207 1.21295 1.18980 1.21523 1.00414 0.97556 0.93966 1.22176 0.94904 0.90091 0.99545 1.20826 0.78485 0.83393 0.86507 1.43663 1.54950 1.34104 1.06938 1.90729 1.40414 1.28812 1.87777 0.93310 0.90889 0.89843 0.91298 0.96205 0.91035 0.97294 0.94133 0.93804 0.99423 0.93202 0.92846 0.92131 0.96907 0.88407 0.76104 0.74963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.93 71.98 0.64 -1.60 16 2 C -0.10 -2.15 2.62 -11.54 -0.03 -2.18 16 3 H 0.12 2.06 6.34 -2.38 -0.02 2.04 16 4 C 0.08 2.22 3.68 86.30 0.32 2.54 16 5 N -0.53 -17.64 4.08 -896.37 -3.65 -21.30 16 6 C 0.07 2.69 5.46 86.32 0.47 3.16 16 7 C -0.09 -4.18 5.19 30.65 0.16 -4.02 16 8 C 0.04 2.05 2.03 -11.46 -0.02 2.03 16 9 C -0.53 -29.51 8.49 25.60 0.22 -29.30 16 10 H 0.05 2.96 7.77 -2.91 -0.02 2.94 16 11 C 0.01 0.71 5.23 84.66 0.44 1.16 16 12 N -0.92 -54.83 12.17 21.45 0.26 -54.57 16 13 Si 0.95 44.06 29.55 68.60 2.03 46.08 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 C -0.10 -3.90 5.32 30.65 0.16 -3.74 16 18 C 0.06 2.02 5.30 86.32 0.46 2.48 16 19 C 0.52 11.47 7.43 87.66 0.65 12.12 16 20 N -0.83 -9.76 8.74 -173.54 -1.52 -11.28 16 21 O -0.60 -19.20 16.81 -3.03 -0.05 -19.25 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 1.52 7.81 -2.39 -0.02 1.50 16 24 H 0.08 0.89 7.43 -2.39 -0.02 0.87 16 25 H 0.07 2.14 7.98 -2.39 -0.02 2.12 16 26 H 0.02 0.65 8.02 -2.39 -0.02 0.63 16 27 H 0.07 2.62 8.01 -2.39 -0.02 2.60 16 28 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.04 2.18 6.97 -2.39 -0.02 2.17 16 30 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 31 H -0.01 -0.72 8.09 -2.39 -0.02 -0.74 16 32 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.10 2.52 6.19 -2.39 -0.01 2.51 16 37 H 0.41 3.98 8.93 -92.71 -0.83 3.15 16 38 H 0.42 2.11 8.18 -92.71 -0.76 1.35 16 Total: -1.00 -69.78 301.21 0.00 -69.78 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -0.53 Total: 7.89 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 3.47 Total: -17.36 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -4.91 Total: -87.14 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.25 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -69.78 0.00 -69.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397211544.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.523 kcal (2) G-P(sol) polarization free energy of solvation -69.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds