Wall clock time and date at job start Mon Mar 30 2020 04:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47037 * 2 1 4 4 C 1.34777 * 119.99875 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00162 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00141 * 179.97438 * 4 3 2 7 7 C 1.52993 * 109.47429 * 179.97438 * 6 4 3 8 8 N 1.46906 * 109.47378 * 179.97438 * 7 6 4 9 9 C 1.48536 * 110.99881 * 52.60551 * 8 7 6 10 10 C 1.54934 * 103.22480 * 159.71823 * 9 8 7 11 11 C 1.54596 * 102.92468 * 322.58554 * 10 9 8 12 12 H 1.08994 * 110.30794 * 263.03823 * 11 10 9 13 13 C 1.50700 * 110.38981 * 140.91405 * 11 10 9 14 14 H 1.08003 * 120.00319 * 244.23284 * 13 11 10 15 15 C 1.37877 * 119.99905 * 64.23982 * 13 11 10 16 16 N 1.31514 * 120.00130 * 359.97438 * 15 13 11 17 17 Si 1.86809 * 120.00067 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46924 * 89.99541 * 17 15 13 19 19 H 1.48498 * 109.47048 * 209.99532 * 17 15 13 20 20 H 1.48499 * 109.46886 * 329.99849 * 17 15 13 21 21 C 1.47904 * 110.99725 * 170.00292 * 8 7 6 22 22 H 1.09000 * 109.46986 * 60.00436 * 1 2 3 23 23 H 1.09002 * 109.47070 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00665 * 1 2 3 25 25 H 1.08996 * 109.47407 * 239.99335 * 2 1 3 26 26 H 1.09004 * 109.46733 * 120.00018 * 2 1 3 27 27 H 0.96999 * 120.00082 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.47043 * 59.99777 * 6 4 3 29 29 H 1.09004 * 109.47476 * 299.99851 * 6 4 3 30 30 H 1.09004 * 109.46862 * 60.00067 * 7 6 4 31 31 H 1.09000 * 109.47250 * 300.00090 * 7 6 4 32 32 H 1.09001 * 110.66444 * 278.15706 * 9 8 7 33 33 H 1.08998 * 110.66554 * 41.28532 * 9 8 7 34 34 H 1.09001 * 110.72161 * 204.22373 * 10 9 8 35 35 H 1.09010 * 110.87462 * 81.01847 * 10 9 8 36 36 H 0.97004 * 120.00408 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.91912 * 333.50498 * 21 8 7 38 38 H 1.08997 * 109.92108 * 94.61099 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8458 3.0482 -0.0011 7 6 5.3757 3.0482 -0.0010 8 7 5.8654 4.4333 -0.0022 9 6 5.2488 5.2168 1.0988 10 6 6.2238 6.4079 1.2754 11 6 7.6081 5.7582 1.0480 12 1 8.0692 5.5062 2.0029 13 6 8.5013 6.6859 0.2654 14 1 8.8427 6.4036 -0.7195 15 6 8.8828 7.8952 0.8069 16 7 8.4667 8.2392 2.0062 17 14 9.9906 9.0450 -0.1629 18 1 9.1573 9.9582 -0.9854 19 1 10.8197 9.8424 0.7762 20 1 10.8754 8.2481 -1.0503 21 6 7.3241 4.4798 0.2376 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.3880 2.1185 -0.0004 28 1 3.4827 3.5623 0.8889 29 1 3.4822 3.5619 -0.8911 30 1 5.7391 2.5340 -0.8908 31 1 5.7390 2.5348 0.8892 32 1 4.2582 5.5697 0.8118 33 1 5.1973 4.6231 2.0115 34 1 6.1515 6.8194 2.2822 35 1 6.0329 7.1800 0.5300 36 1 8.7348 9.0901 2.3870 37 1 7.6352 3.6032 0.8059 38 1 7.8559 4.5137 -0.7132 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397568973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:08 Heat of formation + Delta-G solvation = -47.561243 kcal Electronic energy + Delta-G solvation = -17091.932418 eV Core-core repulsion = 14354.648749 eV Total energy + Delta-G solvation = -2737.283668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.81441 -37.98648 -35.46487 -33.62224 -31.89140 -30.72441 -28.54025 -28.15222 -24.56726 -23.53236 -22.37563 -20.71427 -19.64537 -19.30919 -17.05380 -16.48928 -16.11399 -15.94091 -14.90416 -14.84125 -14.36145 -14.19706 -13.59192 -13.21301 -12.83741 -12.78548 -12.18896 -12.14006 -12.05210 -11.73451 -11.62628 -11.04534 -10.82825 -10.70785 -10.57128 -10.51069 -10.15827 -9.89482 -9.62176 -9.24413 -9.22843 -8.74358 -8.36206 -7.67983 -5.97258 -3.98701 2.62768 3.05713 3.34633 3.40923 3.44837 4.48162 4.54480 4.71438 4.77059 4.97673 5.01257 5.16386 5.30626 5.36571 5.49501 5.59638 5.68329 5.74453 5.85292 5.99013 6.14561 6.20966 6.26151 6.34468 6.38387 6.60505 6.92849 7.16924 7.23067 7.34779 7.49879 7.68676 7.81529 7.94795 8.07025 8.16838 8.49026 9.02855 9.64447 11.12904 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.069652 B = 0.003873 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.899874 B = 7228.070689 C = 7381.116470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.737 5.737 4 C 0.515 3.485 5 O -0.541 6.541 6 C -0.139 4.139 7 C 0.063 3.937 8 N -0.517 5.517 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.040 3.960 12 H 0.030 0.970 13 C -0.506 4.506 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.274 1.274 21 C 0.045 3.955 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.401 0.599 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.259 0.741 37 H 0.021 0.979 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.702 -11.254 -2.469 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 N -0.391 5.391 4 C 0.301 3.699 5 O -0.417 6.417 6 C -0.179 4.179 7 C -0.066 4.066 8 N -0.242 5.242 9 C -0.102 4.102 10 C -0.131 4.131 11 C 0.021 3.979 12 H 0.048 0.952 13 C -0.544 4.544 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.082 4.082 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.235 0.765 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.040 0.960 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.231 -11.592 -2.849 19.351 hybrid contribution 0.367 0.640 0.352 0.817 sum -14.864 -10.952 -2.497 18.631 Atomic orbital electron populations 1.22004 0.94531 1.03137 1.02548 1.21269 0.94116 0.83389 1.02317 1.46114 1.07422 1.08758 1.76826 1.20902 0.81855 0.92060 0.75054 1.90699 1.55286 1.46796 1.48927 1.21729 0.98514 0.92747 1.04936 1.21965 0.91819 0.91203 1.01614 1.64835 1.06453 1.09266 1.43608 1.23380 0.98723 0.96591 0.91530 1.22401 0.94837 0.95037 1.00787 1.19496 0.93242 0.90293 0.94915 0.95218 1.21193 1.29118 1.02008 1.02082 0.92451 1.24986 0.96213 0.98017 0.94923 1.69970 1.45406 1.22317 1.15427 0.86609 0.80721 0.80942 0.79810 1.20734 1.21392 1.19941 1.23099 0.86256 0.98591 1.00260 0.91947 0.90896 0.91960 0.91629 0.91662 0.76515 0.88783 0.88086 0.90619 0.94593 0.91834 0.95306 0.92364 0.91972 0.93152 0.96030 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 10.03 37.16 0.37 -0.50 16 2 C 0.11 0.96 6.39 -4.04 -0.03 0.93 16 3 N -0.74 -6.97 5.56 -60.30 -0.33 -7.31 16 4 C 0.51 6.81 7.83 -10.99 -0.09 6.72 16 5 O -0.54 -9.36 15.98 5.56 0.09 -9.28 16 6 C -0.14 -1.79 5.36 -27.89 -0.15 -1.94 16 7 C 0.06 1.06 4.32 -3.82 -0.02 1.04 16 8 N -0.52 -10.07 5.40 -230.45 -1.24 -11.31 16 9 C 0.03 0.48 5.10 -1.90 -0.01 0.47 16 10 C -0.09 -2.15 5.75 -24.87 -0.14 -2.29 16 11 C 0.04 1.00 2.87 -90.41 -0.26 0.74 16 12 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 13 C -0.51 -14.06 8.38 -34.44 -0.29 -14.34 16 14 H 0.06 1.59 7.35 -52.48 -0.39 1.20 16 15 C 0.06 1.67 5.34 -17.82 -0.10 1.58 16 16 N -0.89 -25.78 12.63 55.43 0.70 -25.08 16 17 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.05 0.99 6.34 -2.75 -0.02 0.98 16 22 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.40 2.64 8.47 -40.82 -0.35 2.30 16 28 H 0.09 1.10 6.80 -51.93 -0.35 0.75 16 29 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 31 H 0.04 0.65 7.77 -51.93 -0.40 0.24 16 32 H 0.06 1.05 7.67 -51.93 -0.40 0.65 16 33 H 0.03 0.53 8.00 -51.93 -0.42 0.11 16 34 H 0.06 1.41 8.12 -51.93 -0.42 0.99 16 35 H 0.06 1.56 7.86 -51.92 -0.41 1.15 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 38 H 0.07 1.61 7.40 -51.93 -0.38 1.23 16 LS Contribution 308.53 15.07 4.65 4.65 Total: -1.00 -31.58 308.53 -8.30 -39.89 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.42 Total: -1.46 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -0.72 Total: -6.61 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.88 Total: -43.70 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.58 -8.30 -39.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397568973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.674 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds