Wall clock time and date at job start Mon Mar 30 2020 04:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47037 * 2 1 4 4 C 1.34777 * 119.99875 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00162 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00141 * 179.97438 * 4 3 2 7 7 C 1.52993 * 109.47429 * 179.97438 * 6 4 3 8 8 N 1.46906 * 109.47378 * 179.97438 * 7 6 4 9 9 C 1.48536 * 110.99881 * 52.60551 * 8 7 6 10 10 C 1.54934 * 103.22480 * 159.71823 * 9 8 7 11 11 C 1.54596 * 102.92468 * 322.58554 * 10 9 8 12 12 H 1.08994 * 110.30794 * 263.03823 * 11 10 9 13 13 C 1.50700 * 110.38981 * 140.91405 * 11 10 9 14 14 H 1.08003 * 120.00319 * 244.23284 * 13 11 10 15 15 C 1.37877 * 119.99905 * 64.23982 * 13 11 10 16 16 N 1.31514 * 120.00130 * 359.97438 * 15 13 11 17 17 Si 1.86809 * 120.00067 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46924 * 89.99541 * 17 15 13 19 19 H 1.48498 * 109.47048 * 209.99532 * 17 15 13 20 20 H 1.48499 * 109.46886 * 329.99849 * 17 15 13 21 21 C 1.47904 * 110.99725 * 170.00292 * 8 7 6 22 22 H 1.09000 * 109.46986 * 60.00436 * 1 2 3 23 23 H 1.09002 * 109.47070 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00665 * 1 2 3 25 25 H 1.08996 * 109.47407 * 239.99335 * 2 1 3 26 26 H 1.09004 * 109.46733 * 120.00018 * 2 1 3 27 27 H 0.96999 * 120.00082 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.47043 * 59.99777 * 6 4 3 29 29 H 1.09004 * 109.47476 * 299.99851 * 6 4 3 30 30 H 1.09004 * 109.46862 * 60.00067 * 7 6 4 31 31 H 1.09000 * 109.47250 * 300.00090 * 7 6 4 32 32 H 1.09001 * 110.66444 * 278.15706 * 9 8 7 33 33 H 1.08998 * 110.66554 * 41.28532 * 9 8 7 34 34 H 1.09001 * 110.72161 * 204.22373 * 10 9 8 35 35 H 1.09010 * 110.87462 * 81.01847 * 10 9 8 36 36 H 0.97004 * 120.00408 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.91912 * 333.50498 * 21 8 7 38 38 H 1.08997 * 109.92108 * 94.61099 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8458 3.0482 -0.0011 7 6 5.3757 3.0482 -0.0010 8 7 5.8654 4.4333 -0.0022 9 6 5.2488 5.2168 1.0988 10 6 6.2238 6.4079 1.2754 11 6 7.6081 5.7582 1.0480 12 1 8.0692 5.5062 2.0029 13 6 8.5013 6.6859 0.2654 14 1 8.8427 6.4036 -0.7195 15 6 8.8828 7.8952 0.8069 16 7 8.4667 8.2392 2.0062 17 14 9.9906 9.0450 -0.1629 18 1 9.1573 9.9582 -0.9854 19 1 10.8197 9.8424 0.7762 20 1 10.8754 8.2481 -1.0503 21 6 7.3241 4.4798 0.2376 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.3880 2.1185 -0.0004 28 1 3.4827 3.5623 0.8889 29 1 3.4822 3.5619 -0.8911 30 1 5.7391 2.5340 -0.8908 31 1 5.7390 2.5348 0.8892 32 1 4.2582 5.5697 0.8118 33 1 5.1973 4.6231 2.0115 34 1 6.1515 6.8194 2.2822 35 1 6.0329 7.1800 0.5300 36 1 8.7348 9.0901 2.3870 37 1 7.6352 3.6032 0.8059 38 1 7.8559 4.5137 -0.7132 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397568973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:07 Heat of formation + Delta-G solvation = -70.698038 kcal Electronic energy + Delta-G solvation = -17092.935704 eV Core-core repulsion = 14354.648749 eV Total energy + Delta-G solvation = -2738.286955 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.88859 -39.59925 -36.33644 -35.41797 -33.53017 -31.70233 -30.00589 -29.85909 -26.39653 -24.79524 -23.36855 -21.93668 -21.29566 -20.90709 -18.57964 -18.11021 -17.05754 -16.89514 -16.62873 -16.20081 -15.97472 -15.48056 -14.85534 -14.52038 -14.41213 -13.74482 -13.66570 -13.45690 -13.22549 -12.95107 -12.68224 -12.61059 -12.49338 -12.36201 -12.24445 -12.02922 -11.90913 -11.55068 -11.21930 -10.92366 -10.80630 -10.47961 -10.10266 -9.27272 -8.11777 -6.20272 1.43073 1.43326 1.53956 1.61500 2.19080 2.45177 3.17870 3.23658 3.81981 3.95161 4.11855 4.17229 4.22332 4.23649 4.43699 4.50657 4.52748 4.58093 4.62339 4.89797 4.92036 4.95446 4.98660 5.06565 5.07319 5.25785 5.27408 5.38551 5.48591 5.56384 5.74909 5.86256 6.14948 6.25641 6.39088 6.54996 6.87541 7.25165 7.46199 8.97886 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.069652 B = 0.003873 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.899874 B = 7228.070689 C = 7381.116470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.108 3.892 3 N -0.719 5.719 4 C 0.514 3.486 5 O -0.590 6.590 6 C -0.129 4.129 7 C 0.066 3.934 8 N -0.518 5.518 9 C 0.039 3.961 10 C -0.085 4.085 11 C 0.030 3.970 12 H -0.002 1.002 13 C -0.526 4.526 14 H 0.052 0.948 15 C 0.011 3.989 16 N -0.920 5.920 17 Si 0.956 3.044 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.054 3.946 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.418 0.582 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.068 0.932 31 H 0.022 0.978 32 H 0.100 0.900 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.261 0.739 37 H 0.025 0.975 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.709 -11.191 -3.236 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.015 4.015 3 N -0.373 5.373 4 C 0.301 3.699 5 O -0.470 6.470 6 C -0.169 4.169 7 C -0.063 4.063 8 N -0.243 5.243 9 C -0.089 4.089 10 C -0.124 4.124 11 C 0.011 3.989 12 H 0.016 0.984 13 C -0.564 4.564 14 H 0.071 0.929 15 C -0.187 4.187 16 N -0.560 5.560 17 Si 0.781 3.219 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.074 4.074 22 H 0.090 0.910 23 H 0.102 0.898 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.255 0.745 28 H 0.131 0.869 29 H 0.140 0.860 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.118 0.882 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.295 -11.521 -3.622 21.095 hybrid contribution 0.975 0.580 0.611 1.289 sum -16.320 -10.941 -3.011 19.878 Atomic orbital electron populations 1.21951 0.91665 1.04189 1.03412 1.21386 0.96378 0.82499 1.01279 1.46003 1.06479 1.09978 1.74808 1.20955 0.82709 0.91598 0.74643 1.90689 1.56743 1.48035 1.51553 1.21632 0.95370 0.93039 1.06851 1.21927 0.94732 0.89041 1.00601 1.64808 1.04664 1.11090 1.43692 1.23321 0.98958 0.94523 0.92060 1.22176 0.95125 0.96126 0.98997 1.19486 0.93983 0.91790 0.93660 0.98420 1.21507 1.29855 1.02846 1.02189 0.92932 1.25753 0.97580 0.99515 0.95874 1.70083 1.46392 1.22769 1.16710 0.85590 0.78923 0.78859 0.78494 1.19984 1.20943 1.19437 1.22860 0.88386 0.97007 0.99169 0.90989 0.89822 0.91098 0.92682 0.92849 0.74489 0.86890 0.85969 0.91384 0.96012 0.88194 0.94221 0.94068 0.94003 0.93056 0.95663 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.03 71.98 0.72 -0.48 16 2 C 0.11 1.65 6.39 86.38 0.55 2.20 16 3 N -0.72 -11.79 5.56 -463.07 -2.57 -14.36 16 4 C 0.51 12.65 7.83 87.66 0.69 13.34 16 5 O -0.59 -20.19 15.98 -3.03 -0.05 -20.24 16 6 C -0.13 -2.95 5.36 29.84 0.16 -2.79 16 7 C 0.07 2.12 4.32 86.30 0.37 2.49 16 8 N -0.52 -19.50 5.40 -883.00 -4.76 -24.26 16 9 C 0.04 1.39 5.10 86.65 0.44 1.83 16 10 C -0.09 -4.02 5.75 31.80 0.18 -3.84 16 11 C 0.03 1.55 2.87 -10.66 -0.03 1.52 16 12 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 13 C -0.53 -29.77 8.38 25.60 0.21 -29.56 16 14 H 0.05 2.95 7.35 -2.91 -0.02 2.93 16 15 C 0.01 0.64 5.34 84.65 0.45 1.09 16 16 N -0.92 -53.99 12.63 21.45 0.27 -53.72 16 17 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 C 0.05 2.38 6.34 86.45 0.55 2.93 16 22 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 23 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.42 4.00 8.47 -92.71 -0.79 3.21 16 28 H 0.11 2.19 6.80 -2.38 -0.02 2.17 16 29 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.07 2.30 8.10 -2.38 -0.02 2.28 16 31 H 0.02 0.77 7.77 -2.39 -0.02 0.75 16 32 H 0.10 2.91 7.67 -2.39 -0.02 2.89 16 33 H 0.04 1.36 8.00 -2.39 -0.02 1.34 16 34 H 0.04 2.03 8.12 -2.39 -0.02 2.01 16 35 H 0.04 2.10 7.86 -2.38 -0.02 2.08 16 36 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.03 1.08 7.57 -2.39 -0.02 1.06 16 38 H 0.06 2.86 7.40 -2.39 -0.02 2.85 16 Total: -1.00 -69.54 308.53 -0.54 -70.08 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.24 Total: 7.36 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 4.30 Total: -11.26 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -7.07 Total: -92.35 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.05 Total: -20.24 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.54 -0.54 -70.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397568973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.617 kcal (2) G-P(sol) polarization free energy of solvation -69.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds