Wall clock time and date at job start Mon Mar 30 2020 04:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47059 * 2 1 4 4 C 1.34777 * 119.99828 * 179.72339 * 3 2 1 5 5 O 1.21283 * 120.00222 * 0.28168 * 4 3 2 6 6 C 1.50703 * 120.00290 * 180.27728 * 4 3 2 7 7 C 1.52990 * 109.47398 * 180.02562 * 6 4 3 8 8 N 1.46902 * 109.47164 * 179.97438 * 7 6 4 9 9 C 1.47444 * 110.99682 * 69.88070 * 8 7 6 10 10 C 1.54315 * 107.23727 * 123.25456 * 9 8 7 11 11 C 1.55137 * 103.01660 * 22.28432 * 10 9 8 12 12 H 1.09004 * 110.99474 * 82.43549 * 11 10 9 13 13 C 1.50701 * 110.99224 * 206.21497 * 11 10 9 14 14 H 1.08000 * 119.99981 * 118.54504 * 13 11 10 15 15 C 1.37880 * 120.00128 * 298.54771 * 13 11 10 16 16 N 1.31513 * 119.99936 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99975 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47319 * 60.00128 * 17 15 13 19 19 H 1.48503 * 109.46811 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47152 * 299.99640 * 17 15 13 21 21 C 1.47846 * 111.00075 * 190.71529 * 8 7 6 22 22 H 1.09000 * 109.47665 * 59.99541 * 1 2 3 23 23 H 1.09003 * 109.47345 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47066 * 299.99732 * 1 2 3 25 25 H 1.09004 * 109.47066 * 240.00268 * 2 1 3 26 26 H 1.08994 * 109.46974 * 120.00415 * 2 1 3 27 27 H 0.97001 * 120.00384 * 0.02562 * 3 2 1 28 28 H 1.08998 * 109.46954 * 300.00581 * 6 4 3 29 29 H 1.09002 * 109.46946 * 59.99717 * 6 4 3 30 30 H 1.08998 * 109.47508 * 300.00200 * 7 6 4 31 31 H 1.09011 * 109.47182 * 60.00188 * 7 6 4 32 32 H 1.09000 * 109.88745 * 242.66645 * 9 8 7 33 33 H 1.08999 * 109.88876 * 3.84733 * 9 8 7 34 34 H 1.09004 * 110.70667 * 140.66365 * 10 9 8 35 35 H 1.08997 * 110.70973 * 263.90235 * 10 9 8 36 36 H 0.96998 * 120.00100 * 180.02562 * 16 15 13 37 37 H 1.09003 * 110.37620 * 332.47501 * 21 8 7 38 38 H 1.09001 * 110.37151 * 94.81511 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 0.0056 5 8 4.1315 0.7056 0.0055 6 6 3.8458 3.0483 0.0120 7 6 5.3756 3.0482 0.0169 8 7 5.8653 4.4332 0.0225 9 6 5.5908 5.0855 1.3160 10 6 6.9417 5.5797 1.8747 11 6 7.8276 5.6841 0.6054 12 1 7.6514 6.6241 0.0824 13 6 9.2861 5.5270 0.9506 14 1 9.8546 4.7089 0.5336 15 6 9.8948 6.4277 1.7988 16 7 9.2024 7.4236 2.3070 17 14 11.7025 6.2324 2.2272 18 1 12.5156 6.3022 0.9866 19 1 12.1127 7.3209 3.1503 20 1 11.9160 4.9187 2.8858 21 6 7.3214 4.4814 -0.2293 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.3880 2.1185 0.0004 28 1 3.4856 3.5649 -0.8777 29 1 3.4791 3.5593 0.9022 30 1 5.7362 2.5315 0.9063 31 1 5.7419 2.5373 -0.8737 32 1 4.9184 5.9308 1.1697 33 1 5.1444 4.3688 2.0053 34 1 6.8295 6.5554 2.3476 35 1 7.3569 4.8558 2.5759 36 1 9.6306 8.0574 2.9034 37 1 7.7955 3.5594 0.1073 38 1 7.5181 4.6453 -1.2888 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397568975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:10 Heat of formation + Delta-G solvation = -49.496399 kcal Electronic energy + Delta-G solvation = -17082.078238 eV Core-core repulsion = 14344.710654 eV Total energy + Delta-G solvation = -2737.367583 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.77909 -37.96835 -35.44568 -33.56246 -31.92632 -30.69658 -28.47118 -28.19132 -24.64673 -23.54054 -22.32100 -20.57279 -19.66974 -19.34521 -17.07565 -16.32534 -16.05757 -15.98206 -15.16703 -14.67807 -14.30800 -14.23608 -13.49010 -12.96685 -12.90745 -12.72230 -12.38128 -12.13862 -12.03117 -11.79466 -11.45768 -11.16540 -10.99570 -10.79269 -10.63347 -10.41943 -10.13591 -9.83986 -9.56736 -9.22728 -9.19444 -8.81949 -8.36855 -7.59662 -6.00179 -4.03335 2.65399 3.07484 3.33759 3.37935 3.41072 4.43362 4.57010 4.73165 4.78030 5.01024 5.02347 5.21639 5.33002 5.39278 5.51167 5.60801 5.71144 5.77606 5.81509 6.02908 6.22933 6.25142 6.30065 6.35735 6.54588 6.58272 6.88224 7.16813 7.22299 7.36996 7.67199 7.71934 7.79039 7.90823 8.04358 8.19432 8.45118 8.98426 9.60780 11.09420 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060621 B = 0.003925 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.773558 B = 7132.778964 C = 7304.870814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.113 3.887 3 N -0.738 5.738 4 C 0.514 3.486 5 O -0.540 6.540 6 C -0.134 4.134 7 C 0.068 3.932 8 N -0.537 5.537 9 C 0.036 3.964 10 C -0.117 4.117 11 C 0.049 3.951 12 H 0.037 0.963 13 C -0.515 4.515 14 H 0.055 0.945 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.047 3.953 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.400 0.600 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.260 0.740 37 H 0.037 0.963 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.898 -9.304 -3.301 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 N -0.392 5.392 4 C 0.300 3.700 5 O -0.417 6.417 6 C -0.175 4.175 7 C -0.061 4.061 8 N -0.261 5.261 9 C -0.092 4.092 10 C -0.156 4.156 11 C 0.030 3.970 12 H 0.055 0.945 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.080 4.080 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.235 0.765 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.571 -9.575 -3.579 19.470 hybrid contribution 0.969 -0.190 1.005 1.409 sum -15.602 -9.765 -2.574 18.585 Atomic orbital electron populations 1.22003 0.94555 1.03124 1.02522 1.21266 0.94090 0.83428 1.02320 1.46119 1.07436 1.08718 1.76890 1.20940 0.81835 0.92131 0.75055 1.90705 1.55274 1.46822 1.48863 1.21653 0.98558 0.92438 1.04811 1.21876 0.91921 0.90638 1.01638 1.63588 1.16813 1.14134 1.31556 1.22957 0.99635 0.97528 0.89085 1.22679 0.92310 1.00751 0.99863 1.19727 0.93998 0.92515 0.90790 0.94529 1.21025 0.94500 1.11672 1.28173 0.92630 1.24963 0.97863 0.95110 0.95888 1.69953 1.36016 1.14720 1.32044 0.86669 0.85473 0.77616 0.78306 1.20224 1.21325 1.20333 1.23164 0.84680 1.00167 0.99994 0.91966 0.90911 0.91969 0.91640 0.91667 0.76545 0.88213 0.88974 0.94373 0.90843 0.91921 0.94640 0.90838 0.93433 0.93013 0.94443 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 10.03 37.16 0.37 -0.51 16 2 C 0.11 0.97 6.39 -4.04 -0.03 0.95 16 3 N -0.74 -7.04 5.56 -60.30 -0.33 -7.37 16 4 C 0.51 6.87 7.83 -10.98 -0.09 6.79 16 5 O -0.54 -9.52 15.98 5.55 0.09 -9.43 16 6 C -0.13 -1.73 5.73 -27.89 -0.16 -1.89 16 7 C 0.07 1.16 3.82 -3.83 -0.01 1.15 16 8 N -0.54 -10.33 5.16 -231.25 -1.19 -11.52 16 9 C 0.04 0.69 6.21 -2.84 -0.02 0.67 16 10 C -0.12 -2.78 5.64 -24.91 -0.14 -2.92 16 11 C 0.05 1.24 2.96 -89.64 -0.26 0.98 16 12 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 13 C -0.52 -14.35 8.55 -34.44 -0.29 -14.65 16 14 H 0.06 1.53 7.79 -52.49 -0.41 1.12 16 15 C 0.06 1.78 5.34 -17.82 -0.10 1.69 16 16 N -0.89 -25.62 12.12 55.43 0.67 -24.95 16 17 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.05 1.03 6.13 -2.30 -0.01 1.01 16 22 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.40 2.65 8.47 -40.82 -0.35 2.30 16 28 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.09 1.09 7.15 -51.93 -0.37 0.72 16 30 H 0.04 0.71 7.92 -51.93 -0.41 0.30 16 31 H 0.07 1.28 8.03 -51.92 -0.42 0.86 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.04 0.63 6.91 -51.93 -0.36 0.27 16 34 H 0.07 1.85 7.53 -51.93 -0.39 1.46 16 35 H 0.05 1.18 8.03 -51.93 -0.42 0.76 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.04 0.84 7.70 -51.93 -0.40 0.44 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 309.42 15.07 4.66 4.66 Total: -1.00 -31.40 309.42 -8.33 -39.73 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.46 Total: -0.88 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.74 Total: -6.74 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.86 Total: -43.85 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.40 -8.33 -39.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397568975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.765 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds