Wall clock time and date at job start Mon Mar 30 2020 04:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47059 * 2 1 4 4 C 1.34777 * 119.99828 * 179.72339 * 3 2 1 5 5 O 1.21283 * 120.00222 * 0.28168 * 4 3 2 6 6 C 1.50703 * 120.00290 * 180.27728 * 4 3 2 7 7 C 1.52990 * 109.47398 * 180.02562 * 6 4 3 8 8 N 1.46902 * 109.47164 * 179.97438 * 7 6 4 9 9 C 1.47444 * 110.99682 * 69.88070 * 8 7 6 10 10 C 1.54315 * 107.23727 * 123.25456 * 9 8 7 11 11 C 1.55137 * 103.01660 * 22.28432 * 10 9 8 12 12 H 1.09004 * 110.99474 * 82.43549 * 11 10 9 13 13 C 1.50701 * 110.99224 * 206.21497 * 11 10 9 14 14 H 1.08000 * 119.99981 * 118.54504 * 13 11 10 15 15 C 1.37880 * 120.00128 * 298.54771 * 13 11 10 16 16 N 1.31513 * 119.99936 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99975 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47319 * 60.00128 * 17 15 13 19 19 H 1.48503 * 109.46811 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47152 * 299.99640 * 17 15 13 21 21 C 1.47846 * 111.00075 * 190.71529 * 8 7 6 22 22 H 1.09000 * 109.47665 * 59.99541 * 1 2 3 23 23 H 1.09003 * 109.47345 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47066 * 299.99732 * 1 2 3 25 25 H 1.09004 * 109.47066 * 240.00268 * 2 1 3 26 26 H 1.08994 * 109.46974 * 120.00415 * 2 1 3 27 27 H 0.97001 * 120.00384 * 0.02562 * 3 2 1 28 28 H 1.08998 * 109.46954 * 300.00581 * 6 4 3 29 29 H 1.09002 * 109.46946 * 59.99717 * 6 4 3 30 30 H 1.08998 * 109.47508 * 300.00200 * 7 6 4 31 31 H 1.09011 * 109.47182 * 60.00188 * 7 6 4 32 32 H 1.09000 * 109.88745 * 242.66645 * 9 8 7 33 33 H 1.08999 * 109.88876 * 3.84733 * 9 8 7 34 34 H 1.09004 * 110.70667 * 140.66365 * 10 9 8 35 35 H 1.08997 * 110.70973 * 263.90235 * 10 9 8 36 36 H 0.96998 * 120.00100 * 180.02562 * 16 15 13 37 37 H 1.09003 * 110.37620 * 332.47501 * 21 8 7 38 38 H 1.09001 * 110.37151 * 94.81511 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 0.0056 5 8 4.1315 0.7056 0.0055 6 6 3.8458 3.0483 0.0120 7 6 5.3756 3.0482 0.0169 8 7 5.8653 4.4332 0.0225 9 6 5.5908 5.0855 1.3160 10 6 6.9417 5.5797 1.8747 11 6 7.8276 5.6841 0.6054 12 1 7.6514 6.6241 0.0824 13 6 9.2861 5.5270 0.9506 14 1 9.8546 4.7089 0.5336 15 6 9.8948 6.4277 1.7988 16 7 9.2024 7.4236 2.3070 17 14 11.7025 6.2324 2.2272 18 1 12.5156 6.3022 0.9866 19 1 12.1127 7.3209 3.1503 20 1 11.9160 4.9187 2.8858 21 6 7.3214 4.4814 -0.2293 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.3880 2.1185 0.0004 28 1 3.4856 3.5649 -0.8777 29 1 3.4791 3.5593 0.9022 30 1 5.7362 2.5315 0.9063 31 1 5.7419 2.5373 -0.8737 32 1 4.9184 5.9308 1.1697 33 1 5.1444 4.3688 2.0053 34 1 6.8295 6.5554 2.3476 35 1 7.3569 4.8558 2.5759 36 1 9.6306 8.0574 2.9034 37 1 7.7955 3.5594 0.1073 38 1 7.5181 4.6453 -1.2888 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397568975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:10 Heat of formation + Delta-G solvation = -72.198212 kcal Electronic energy + Delta-G solvation = -17083.062662 eV Core-core repulsion = 14344.710654 eV Total energy + Delta-G solvation = -2738.352008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86746 -39.60518 -36.33026 -35.38509 -33.54744 -31.68104 -30.01188 -29.87119 -26.48787 -24.78926 -23.31305 -21.79232 -21.48996 -20.88803 -18.50877 -18.00411 -17.16066 -16.94333 -16.65583 -16.41029 -15.83895 -15.35479 -14.74126 -14.42846 -14.26922 -14.08459 -13.88823 -13.31988 -13.09273 -13.01573 -12.70667 -12.68159 -12.66686 -12.36807 -12.35234 -12.01830 -11.83646 -11.50036 -11.18317 -10.91440 -10.88258 -10.49661 -10.09832 -9.21366 -8.14696 -6.25092 1.40740 1.42053 1.49762 1.62481 2.19038 2.41910 3.15252 3.23517 3.85326 3.98706 4.12100 4.13305 4.22081 4.25542 4.43241 4.52726 4.52888 4.65482 4.68060 4.83861 4.94011 4.95341 4.99938 5.06547 5.06982 5.25127 5.27419 5.35163 5.49283 5.59144 5.81638 5.91359 6.02485 6.26415 6.36235 6.55861 6.83093 7.26235 7.42366 8.94095 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060621 B = 0.003925 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.773558 B = 7132.778964 C = 7304.870814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.108 3.892 3 N -0.719 5.719 4 C 0.513 3.487 5 O -0.591 6.591 6 C -0.123 4.123 7 C 0.070 3.930 8 N -0.529 5.529 9 C 0.046 3.954 10 C -0.111 4.111 11 C 0.039 3.961 12 H 0.010 0.990 13 C -0.538 4.538 14 H 0.051 0.949 15 C 0.016 3.984 16 N -0.915 5.915 17 Si 0.955 3.045 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.274 1.274 21 C 0.057 3.943 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.418 0.582 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.018 0.982 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.027 0.973 36 H 0.262 0.738 37 H 0.027 0.973 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.576 -9.633 -3.454 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.016 4.016 3 N -0.373 5.373 4 C 0.300 3.700 5 O -0.471 6.471 6 C -0.163 4.163 7 C -0.059 4.059 8 N -0.253 5.253 9 C -0.081 4.081 10 C -0.150 4.150 11 C 0.020 3.980 12 H 0.028 0.972 13 C -0.577 4.577 14 H 0.069 0.931 15 C -0.184 4.184 16 N -0.554 5.554 17 Si 0.780 3.220 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.199 1.199 21 C -0.071 4.071 22 H 0.091 0.909 23 H 0.102 0.898 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.255 0.745 28 H 0.141 0.859 29 H 0.129 0.871 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.310 -9.893 -3.740 21.144 hybrid contribution 1.456 -0.096 1.038 1.790 sum -16.854 -9.988 -2.702 19.777 Atomic orbital electron populations 1.21949 0.91620 1.04184 1.03430 1.21383 0.96407 0.82537 1.01239 1.46000 1.06476 1.09947 1.74835 1.21011 0.82701 0.91688 0.74616 1.90694 1.56774 1.48108 1.51564 1.21536 0.95251 0.92674 1.06833 1.21875 0.94924 0.88727 1.00405 1.63631 1.14696 1.15602 1.31345 1.22893 0.97318 0.98672 0.89240 1.22484 0.94601 0.99230 0.98664 1.19688 0.93648 0.92634 0.92050 0.97225 1.21370 0.96009 1.11770 1.28520 0.93069 1.25735 1.02125 0.94788 0.95735 1.70066 1.37633 1.15277 1.32398 0.85662 0.80371 0.77693 0.78239 1.19507 1.20682 1.19919 1.22952 0.86403 0.98024 0.99689 0.90939 0.89843 0.91093 0.92695 0.92944 0.74471 0.85923 0.87074 0.96331 0.91573 0.89956 0.92432 0.92894 0.95432 0.92922 0.95475 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.03 71.98 0.72 -0.50 16 2 C 0.11 1.68 6.39 86.38 0.55 2.24 16 3 N -0.72 -11.99 5.56 -463.07 -2.57 -14.56 16 4 C 0.51 12.85 7.83 87.66 0.69 13.54 16 5 O -0.59 -20.68 15.98 -3.04 -0.05 -20.73 16 6 C -0.12 -2.84 5.73 29.85 0.17 -2.67 16 7 C 0.07 2.28 3.82 86.30 0.33 2.61 16 8 N -0.53 -19.68 5.16 -885.55 -4.57 -24.25 16 9 C 0.05 1.72 6.21 86.65 0.54 2.26 16 10 C -0.11 -5.32 5.64 31.77 0.18 -5.14 16 11 C 0.04 2.02 2.96 -10.16 -0.03 1.99 16 12 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 13 C -0.54 -30.59 8.55 25.60 0.22 -30.38 16 14 H 0.05 2.87 7.79 -2.91 -0.02 2.85 16 15 C 0.02 0.88 5.34 84.66 0.45 1.33 16 16 N -0.92 -53.52 12.12 21.45 0.26 -53.26 16 17 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 C 0.06 2.51 6.13 86.77 0.53 3.04 16 22 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 23 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 25 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.42 4.06 8.47 -92.71 -0.79 3.27 16 28 H 0.12 2.33 8.14 -2.39 -0.02 2.32 16 29 H 0.11 2.19 7.15 -2.39 -0.02 2.17 16 30 H 0.02 0.68 7.92 -2.39 -0.02 0.66 16 31 H 0.07 2.27 8.03 -2.38 -0.02 2.25 16 32 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.06 1.90 6.91 -2.39 -0.02 1.88 16 34 H 0.05 2.72 7.53 -2.38 -0.02 2.70 16 35 H 0.03 1.38 8.03 -2.39 -0.02 1.36 16 36 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.03 1.24 7.70 -2.39 -0.02 1.22 16 38 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -69.07 309.42 -0.31 -69.38 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.24 Total: 8.67 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 4.35 Total: -11.68 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -6.88 Total: -92.07 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -69.07 -0.31 -69.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397568975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.814 kcal (2) G-P(sol) polarization free energy of solvation -69.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds