Wall clock time and date at job start Mon Mar 30 2020 04:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.46808 * 2 1 4 4 C 1.34774 * 119.99746 * 179.97438 * 3 2 1 5 5 O 1.21284 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99689 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.47293 * 60.00496 * 6 4 3 8 8 C 1.52998 * 109.47479 * 300.00159 * 6 4 3 9 9 N 1.46909 * 109.46910 * 180.02562 * 6 4 3 10 10 C 1.48537 * 110.99712 * 174.11529 * 9 6 4 11 11 C 1.54939 * 103.22206 * 159.72196 * 10 9 6 12 12 C 1.54594 * 102.92366 * 322.58431 * 11 10 9 13 13 H 1.08999 * 110.39798 * 262.99743 * 12 11 10 14 14 C 1.50697 * 110.30866 * 140.87549 * 12 11 10 15 15 H 1.08007 * 120.00377 * 244.29106 * 14 12 11 16 16 C 1.37881 * 120.00277 * 64.28372 * 14 12 11 17 17 N 1.31517 * 119.99379 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00108 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47490 * 59.99981 * 18 16 14 20 20 H 1.48495 * 109.47040 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46805 * 299.99777 * 18 16 14 22 22 C 1.47895 * 111.00104 * 291.51391 * 9 6 4 23 23 H 1.09008 * 109.47427 * 299.99715 * 1 2 3 24 24 H 1.09003 * 109.47558 * 59.99813 * 1 2 3 25 25 H 1.09001 * 109.47346 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47545 * 119.99714 * 2 1 3 27 27 H 1.08993 * 109.47034 * 240.00393 * 2 1 3 28 28 H 0.96997 * 120.00125 * 0.02562 * 3 2 1 29 29 H 1.09005 * 109.46549 * 54.28637 * 8 6 4 30 30 H 1.09002 * 109.47425 * 174.27886 * 8 6 4 31 31 H 1.08998 * 109.47168 * 294.28651 * 8 6 4 32 32 H 1.08993 * 110.66901 * 278.15759 * 10 9 6 33 33 H 1.09002 * 110.66618 * 41.29181 * 10 9 6 34 34 H 1.09007 * 110.72167 * 204.22702 * 11 10 9 35 35 H 1.08997 * 110.72477 * 80.94629 * 11 10 9 36 36 H 0.96998 * 119.99179 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.91615 * 333.50660 * 22 9 6 38 38 H 1.09000 * 109.91991 * 94.79798 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1315 0.7058 0.0005 6 6 3.8455 3.0485 -0.0001 7 1 3.4818 3.5628 0.8895 8 6 3.3361 3.7690 -1.2499 9 7 5.3146 3.0485 0.0001 10 6 5.8468 4.4279 -0.1427 11 6 7.2947 4.3066 0.3955 12 6 7.1437 3.3174 1.5739 13 1 7.0597 3.8589 2.5161 14 6 8.3172 2.3728 1.6175 15 1 8.1659 1.3157 1.4558 16 6 9.5841 2.8581 1.8636 17 7 9.7682 4.1453 2.0608 18 14 11.0387 1.6874 1.9169 19 1 11.1669 0.9972 0.6084 20 1 12.2800 2.4527 2.1972 21 1 10.8254 0.6815 2.9884 22 6 5.8446 2.5427 1.2848 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.3879 2.1185 0.0004 29 1 2.2509 3.6811 -1.3029 30 1 3.6133 4.8220 -1.2006 31 1 3.7810 3.3172 -2.1365 32 1 5.8497 4.7328 -1.1891 33 1 5.2692 5.1275 0.4615 34 1 7.6577 5.2725 0.7469 35 1 7.9571 3.8988 -0.3680 36 1 10.6595 4.4866 2.2343 37 1 5.1213 2.7207 2.0807 38 1 6.0577 1.4768 1.2048 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397614096.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:40 Heat of formation + Delta-G solvation = -62.278275 kcal Electronic energy + Delta-G solvation = -17778.642161 eV Core-core repulsion = 15040.720314 eV Total energy + Delta-G solvation = -2737.921847 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.14662 -39.25017 -36.23060 -35.51472 -33.68325 -31.36844 -30.02174 -29.66848 -26.21734 -25.45392 -23.49035 -21.99318 -21.26532 -20.91315 -18.66729 -17.91014 -17.47239 -16.60396 -16.58008 -16.10562 -15.98411 -15.13229 -14.87510 -14.44749 -14.05377 -13.64474 -13.54932 -13.29944 -13.10678 -12.99578 -12.91947 -12.66180 -12.62418 -12.40174 -12.39067 -12.20248 -11.94251 -11.57019 -11.19389 -10.85127 -10.67715 -10.49786 -10.06619 -9.21122 -8.13977 -6.21628 1.39138 1.41487 1.49396 1.68876 2.15861 2.43318 3.13319 3.19562 3.79910 4.02622 4.11496 4.15700 4.20268 4.24503 4.43159 4.44860 4.53266 4.57200 4.74433 4.88882 4.92446 4.97128 5.02334 5.07397 5.24473 5.27424 5.30220 5.38644 5.51147 5.55040 5.73758 5.84775 6.14898 6.20730 6.39551 6.65464 6.84472 7.35518 7.44230 8.95448 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034852 B = 0.005642 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.208354 B = 4961.906221 C = 5558.813637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.110 3.890 3 N -0.718 5.718 4 C 0.511 3.489 5 O -0.570 6.570 6 C 0.050 3.950 7 H 0.078 0.922 8 C -0.133 4.133 9 N -0.513 5.513 10 C 0.047 3.953 11 C -0.085 4.085 12 C 0.031 3.969 13 H 0.004 0.996 14 C -0.529 4.529 15 H 0.041 0.959 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.953 3.047 19 H -0.275 1.275 20 H -0.277 1.277 21 H -0.273 1.273 22 C 0.068 3.932 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.416 0.584 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.033 0.967 36 H 0.262 0.738 37 H 0.022 0.978 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.313 -0.149 -5.497 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 N -0.373 5.373 4 C 0.297 3.703 5 O -0.447 6.447 6 C -0.062 4.062 7 H 0.096 0.904 8 C -0.190 4.190 9 N -0.238 5.238 10 C -0.080 4.080 11 C -0.123 4.123 12 C 0.012 3.988 13 H 0.022 0.978 14 C -0.567 4.567 15 H 0.059 0.941 16 C -0.183 4.183 17 N -0.556 5.556 18 Si 0.778 3.222 19 H -0.201 1.201 20 H -0.202 1.202 21 H -0.198 1.198 22 C -0.060 4.060 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.253 0.747 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.483 -1.033 -5.894 20.382 hybrid contribution 0.758 0.049 1.019 1.271 sum -18.725 -0.984 -4.875 19.374 Atomic orbital electron populations 1.21935 0.91208 1.04213 1.03515 1.21354 0.96576 0.82450 1.00959 1.45919 1.06042 1.09792 1.75572 1.20933 0.82750 0.91463 0.75135 1.90713 1.56731 1.47563 1.49711 1.21960 0.89685 0.92684 1.01860 0.90434 1.21826 1.02104 1.00677 0.94418 1.64540 1.05806 1.20136 1.33325 1.23272 0.95023 0.88481 1.01232 1.22163 0.94361 0.98350 0.97457 1.19497 0.91878 0.93602 0.93857 0.97776 1.21436 0.93219 0.93489 1.48568 0.94065 1.25686 1.01190 0.96679 0.94751 1.70056 1.22791 1.13425 1.49320 0.85699 0.78784 0.79110 0.78604 1.20073 1.20233 1.19834 1.22707 0.95567 0.99349 0.88362 0.91065 0.90641 0.89842 0.93469 0.92928 0.74693 0.88633 0.90040 0.92526 0.88980 0.92803 0.93404 0.94772 0.92923 0.95964 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.03 71.98 0.72 -0.85 16 2 C 0.11 2.17 6.39 86.38 0.55 2.73 16 3 N -0.72 -15.19 5.41 -463.06 -2.51 -17.69 16 4 C 0.51 16.35 6.95 87.66 0.61 16.96 16 5 O -0.57 -24.93 14.97 -3.04 -0.05 -24.98 16 6 C 0.05 1.48 2.25 44.17 0.10 1.58 16 7 H 0.08 2.04 7.86 -2.39 -0.02 2.03 16 8 C -0.13 -2.71 8.68 71.98 0.62 -2.09 16 9 N -0.51 -20.67 4.82 -862.22 -4.15 -24.82 16 10 C 0.05 1.74 5.20 86.65 0.45 2.19 16 11 C -0.08 -4.14 5.75 31.80 0.18 -3.96 16 12 C 0.03 1.67 2.87 -10.66 -0.03 1.64 16 13 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 14 C -0.53 -31.86 8.38 25.60 0.21 -31.64 16 15 H 0.04 2.55 7.34 -2.91 -0.02 2.53 16 16 C 0.02 0.93 5.34 84.66 0.45 1.38 16 17 N -0.92 -54.95 12.63 21.45 0.27 -54.68 16 18 Si 0.95 46.45 29.54 68.60 2.03 48.48 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 22 C 0.07 3.25 5.36 86.45 0.46 3.72 16 23 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 24 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.42 5.43 7.83 -92.71 -0.73 4.71 16 29 H 0.09 1.22 7.41 -2.38 -0.02 1.20 16 30 H 0.08 1.48 7.15 -2.39 -0.02 1.46 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 2.97 7.77 -2.39 -0.02 2.96 16 33 H 0.05 1.76 8.02 -2.39 -0.02 1.74 16 34 H 0.05 2.40 8.12 -2.38 -0.02 2.38 16 35 H 0.03 1.82 7.86 -2.39 -0.02 1.80 16 36 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 37 H 0.02 0.99 7.59 -2.39 -0.02 0.97 16 38 H 0.05 2.62 6.57 -2.39 -0.02 2.61 16 Total: -1.00 -75.23 304.69 0.24 -74.99 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 0.30 Total: 7.06 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 4.34 Total: -8.36 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -6.39 Total: -97.19 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.05 Total: -24.98 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -75.23 0.24 -74.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397614096.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.710 kcal (2) G-P(sol) polarization free energy of solvation -75.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds