Wall clock time and date at job start Mon Mar 30 2020 04:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47100 * 2 1 4 4 C 1.34781 * 120.00271 * 179.97438 * 3 2 1 5 5 O 1.21287 * 119.99358 * 359.97438 * 4 3 2 6 6 C 1.50691 * 120.00328 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47173 * 59.99565 * 6 4 3 8 8 C 1.53003 * 109.46969 * 299.99926 * 6 4 3 9 9 N 1.46903 * 109.47144 * 180.02562 * 6 4 3 10 10 C 1.48725 * 111.01249 * 174.46408 * 9 6 4 11 11 C 1.54378 * 104.51408 * 158.96657 * 10 9 6 12 12 C 1.54260 * 105.15099 * 336.26277 * 11 10 9 13 13 H 1.09002 * 110.31794 * 118.84625 * 12 11 10 14 14 C 1.50698 * 110.32724 * 240.95405 * 12 11 10 15 15 H 1.07998 * 120.00044 * 118.54724 * 14 12 11 16 16 C 1.37878 * 119.99796 * 298.54540 * 14 12 11 17 17 N 1.31520 * 119.99991 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99950 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47283 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47273 * 120.00273 * 18 16 14 21 21 H 1.48503 * 109.47070 * 240.00161 * 18 16 14 22 22 C 1.48560 * 110.99952 * 289.96761 * 9 6 4 23 23 H 1.08995 * 109.47148 * 300.00476 * 1 2 3 24 24 H 1.09001 * 109.46624 * 60.00680 * 1 2 3 25 25 H 1.08995 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47843 * 239.99436 * 2 1 3 27 27 H 1.09010 * 109.46803 * 119.99409 * 2 1 3 28 28 H 0.96999 * 120.00247 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.46873 * 54.18967 * 8 6 4 30 30 H 1.09006 * 109.47022 * 174.18528 * 8 6 4 31 31 H 1.08995 * 109.47573 * 294.18786 * 8 6 4 32 32 H 1.08994 * 110.39261 * 40.24270 * 10 9 6 33 33 H 1.09003 * 110.50521 * 277.74687 * 10 9 6 34 34 H 1.09007 * 110.32266 * 217.31946 * 11 10 9 35 35 H 1.08999 * 110.32472 * 95.21705 * 11 10 9 36 36 H 0.97002 * 119.99874 * 179.97438 * 17 16 14 37 37 H 1.09006 * 110.40785 * 82.18044 * 22 9 6 38 38 H 1.09001 * 110.40997 * 319.74553 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1315 0.7056 0.0015 6 6 3.8457 3.0483 -0.0001 7 1 3.4819 3.5627 0.8894 8 6 3.3364 3.7688 -1.2500 9 7 5.3148 3.0483 0.0001 10 6 5.8481 4.4301 -0.1344 11 6 7.2889 4.3437 0.4130 12 6 7.2888 3.1243 1.3578 13 1 7.9940 2.3718 1.0046 14 6 7.6373 3.5492 2.7610 15 1 6.9276 3.4021 3.5617 16 6 8.8621 4.1257 3.0226 17 7 9.7261 4.3052 2.0474 18 14 9.2938 4.6530 4.7618 19 1 8.1591 4.3444 5.6687 20 1 10.5030 3.9201 5.2156 21 1 9.5628 6.1133 4.7840 22 6 5.8470 2.5752 1.3039 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3632 -1.0276 0.0005 26 1 1.8935 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.3880 2.1185 -0.0004 29 1 2.2513 3.6795 -1.3040 30 1 3.6122 4.8222 -1.2000 31 1 3.7826 3.3181 -2.1365 32 1 5.2562 5.1252 0.4610 33 1 5.8566 4.7359 -1.1807 34 1 7.5393 5.2500 0.9647 35 1 7.9954 4.1906 -0.4028 36 1 10.5877 4.7112 2.2314 37 1 5.8535 1.4858 1.3391 38 1 5.2553 2.9794 2.1252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397614097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:43 Heat of formation + Delta-G solvation = -38.690267 kcal Electronic energy + Delta-G solvation = -17755.520963 eV Core-core repulsion = 15018.621969 eV Total energy + Delta-G solvation = -2736.898994 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.80585 -37.63907 -35.13710 -33.78177 -31.94846 -30.30187 -28.27127 -28.04009 -24.36602 -24.17729 -22.50032 -20.58110 -19.64145 -19.17545 -16.85621 -16.40389 -15.90403 -15.49547 -15.03564 -14.64412 -14.18693 -14.05576 -13.49789 -13.02043 -12.68704 -12.42233 -12.16415 -12.05136 -11.97712 -11.64351 -11.59651 -11.37133 -11.00472 -10.73729 -10.57601 -10.45112 -10.19495 -9.64763 -9.38196 -9.16328 -8.98073 -8.64831 -8.32770 -7.72945 -5.96194 -3.99684 2.92926 3.21879 3.31911 3.39961 3.43792 4.45194 4.64440 4.78139 4.91314 4.98435 5.15481 5.19777 5.36290 5.37474 5.63000 5.63837 5.75681 5.82680 5.86327 5.94097 6.11612 6.19673 6.31292 6.48348 6.50133 6.67014 7.04077 7.23719 7.25210 7.50894 7.59642 7.75558 7.80254 7.96558 8.09002 8.49993 8.53854 9.03697 9.63835 11.13065 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037022 B = 0.005390 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.120954 B = 5193.799310 C = 5585.535078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.741 5.741 4 C 0.518 3.482 5 O -0.513 6.513 6 C 0.052 3.948 7 H 0.062 0.938 8 C -0.140 4.140 9 N -0.494 5.494 10 C 0.033 3.967 11 C -0.091 4.091 12 C 0.048 3.952 13 H 0.034 0.966 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.887 5.887 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.043 3.957 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.396 0.604 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.259 0.741 37 H 0.072 0.928 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.631 -1.839 -5.371 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.396 5.396 4 C 0.304 3.696 5 O -0.386 6.386 6 C -0.060 4.060 7 H 0.079 0.921 8 C -0.198 4.198 9 N -0.218 5.218 10 C -0.094 4.094 11 C -0.130 4.130 12 C 0.029 3.971 13 H 0.052 0.948 14 C -0.552 4.552 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.525 5.525 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.084 4.084 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.230 0.770 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -16.698 -2.821 -5.852 17.917 hybrid contribution -0.368 1.215 1.649 2.081 sum -17.066 -1.606 -4.203 17.649 Atomic orbital electron populations 1.21994 0.94747 1.02997 1.02353 1.21229 0.93832 0.83489 1.02310 1.46084 1.07309 1.08433 1.77759 1.20670 0.81661 0.91700 0.75599 1.90703 1.54972 1.46066 1.46817 1.21744 0.92858 0.92291 0.99157 0.92069 1.21810 0.99857 1.00825 0.97268 1.65361 1.02567 1.19909 1.34008 1.23250 0.98375 0.88483 0.99325 1.22189 0.91069 1.01488 0.98221 1.19374 0.89792 0.93194 0.94783 0.94801 1.21244 1.00622 1.39882 0.93453 0.92775 1.24966 0.96333 0.95931 0.96737 1.70007 1.07487 1.43896 1.31124 0.86592 0.78377 0.78170 0.85186 1.19890 1.21022 1.21105 1.23352 0.98185 1.00124 0.86757 0.92073 0.92094 0.90990 0.91710 0.91709 0.76986 0.92500 0.91388 0.91251 0.95053 0.91841 0.91457 0.93542 0.93141 0.90911 0.95343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 10.03 37.16 0.37 -0.72 16 2 C 0.12 1.20 6.39 -4.04 -0.03 1.17 16 3 N -0.74 -8.61 5.41 -60.29 -0.33 -8.93 16 4 C 0.52 8.46 6.96 -10.99 -0.08 8.39 16 5 O -0.51 -10.72 14.85 5.55 0.08 -10.64 16 6 C 0.05 0.83 2.31 -68.87 -0.16 0.68 16 7 H 0.06 0.94 7.88 -51.93 -0.41 0.53 16 8 C -0.14 -1.71 8.69 37.16 0.32 -1.39 16 9 N -0.49 -10.03 4.89 -223.26 -1.09 -11.12 16 10 C 0.03 0.65 5.15 -2.09 -0.01 0.64 16 11 C -0.09 -2.20 5.74 -25.35 -0.15 -2.35 16 12 C 0.05 1.26 2.99 -90.39 -0.27 0.99 16 13 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.51 -14.50 8.37 -34.44 -0.29 -14.79 16 15 H 0.05 1.52 7.59 -52.49 -0.40 1.12 16 16 C 0.06 1.75 5.09 -17.82 -0.09 1.66 16 17 N -0.89 -25.94 12.35 55.43 0.68 -25.26 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.04 1.00 5.34 -2.19 -0.01 0.98 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.40 3.37 7.83 -40.82 -0.32 3.05 16 29 H 0.06 0.51 7.41 -51.93 -0.38 0.13 16 30 H 0.07 0.79 7.17 -51.93 -0.37 0.42 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 33 H 0.06 1.12 7.79 -51.93 -0.40 0.72 16 34 H 0.07 1.75 7.24 -51.92 -0.38 1.37 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.07 1.79 6.92 -51.93 -0.36 1.43 16 38 H 0.03 0.66 7.39 -51.93 -0.38 0.27 16 LS Contribution 304.08 15.07 4.58 4.58 Total: -1.00 -32.43 304.08 -7.81 -40.24 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.34 Total: -0.71 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -0.38 Total: -4.73 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.73 Total: -45.31 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.43 -7.81 -40.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397614097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.553 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds