Wall clock time and date at job start Mon Mar 30 2020 04:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47100 * 2 1 4 4 C 1.34781 * 120.00271 * 179.97438 * 3 2 1 5 5 O 1.21287 * 119.99358 * 359.97438 * 4 3 2 6 6 C 1.50691 * 120.00328 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47173 * 59.99565 * 6 4 3 8 8 C 1.53003 * 109.46969 * 299.99926 * 6 4 3 9 9 N 1.46903 * 109.47144 * 180.02562 * 6 4 3 10 10 C 1.48725 * 111.01249 * 174.46408 * 9 6 4 11 11 C 1.54378 * 104.51408 * 158.96657 * 10 9 6 12 12 C 1.54260 * 105.15099 * 336.26277 * 11 10 9 13 13 H 1.09002 * 110.31794 * 118.84625 * 12 11 10 14 14 C 1.50698 * 110.32724 * 240.95405 * 12 11 10 15 15 H 1.07998 * 120.00044 * 118.54724 * 14 12 11 16 16 C 1.37878 * 119.99796 * 298.54540 * 14 12 11 17 17 N 1.31520 * 119.99991 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99950 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47283 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47273 * 120.00273 * 18 16 14 21 21 H 1.48503 * 109.47070 * 240.00161 * 18 16 14 22 22 C 1.48560 * 110.99952 * 289.96761 * 9 6 4 23 23 H 1.08995 * 109.47148 * 300.00476 * 1 2 3 24 24 H 1.09001 * 109.46624 * 60.00680 * 1 2 3 25 25 H 1.08995 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47843 * 239.99436 * 2 1 3 27 27 H 1.09010 * 109.46803 * 119.99409 * 2 1 3 28 28 H 0.96999 * 120.00247 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.46873 * 54.18967 * 8 6 4 30 30 H 1.09006 * 109.47022 * 174.18528 * 8 6 4 31 31 H 1.08995 * 109.47573 * 294.18786 * 8 6 4 32 32 H 1.08994 * 110.39261 * 40.24270 * 10 9 6 33 33 H 1.09003 * 110.50521 * 277.74687 * 10 9 6 34 34 H 1.09007 * 110.32266 * 217.31946 * 11 10 9 35 35 H 1.08999 * 110.32472 * 95.21705 * 11 10 9 36 36 H 0.97002 * 119.99874 * 179.97438 * 17 16 14 37 37 H 1.09006 * 110.40785 * 82.18044 * 22 9 6 38 38 H 1.09001 * 110.40997 * 319.74553 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1315 0.7056 0.0015 6 6 3.8457 3.0483 -0.0001 7 1 3.4819 3.5627 0.8894 8 6 3.3364 3.7688 -1.2500 9 7 5.3148 3.0483 0.0001 10 6 5.8481 4.4301 -0.1344 11 6 7.2889 4.3437 0.4130 12 6 7.2888 3.1243 1.3578 13 1 7.9940 2.3718 1.0046 14 6 7.6373 3.5492 2.7610 15 1 6.9276 3.4021 3.5617 16 6 8.8621 4.1257 3.0226 17 7 9.7261 4.3052 2.0474 18 14 9.2938 4.6530 4.7618 19 1 8.1591 4.3444 5.6687 20 1 10.5030 3.9201 5.2156 21 1 9.5628 6.1133 4.7840 22 6 5.8470 2.5752 1.3039 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3632 -1.0276 0.0005 26 1 1.8935 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.3880 2.1185 -0.0004 29 1 2.2513 3.6795 -1.3040 30 1 3.6122 4.8222 -1.2000 31 1 3.7826 3.3181 -2.1365 32 1 5.2562 5.1252 0.4610 33 1 5.8566 4.7359 -1.1807 34 1 7.5393 5.2500 0.9647 35 1 7.9954 4.1906 -0.4028 36 1 10.5877 4.7112 2.2314 37 1 5.8535 1.4858 1.3391 38 1 5.2553 2.9794 2.1252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397614097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:42 Heat of formation + Delta-G solvation = -62.950424 kcal Electronic energy + Delta-G solvation = -17756.572962 eV Core-core repulsion = 15018.621969 eV Total energy + Delta-G solvation = -2737.950993 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.13689 -39.24917 -36.23493 -35.54827 -33.68568 -31.36875 -29.97434 -29.68362 -26.23598 -25.47013 -23.50792 -22.09594 -21.22454 -20.91335 -18.36953 -18.08833 -17.33395 -16.65128 -16.59240 -16.40244 -15.70279 -15.29018 -14.92523 -14.45202 -14.19842 -13.66166 -13.34967 -13.25656 -13.18459 -13.08425 -12.88244 -12.66092 -12.53126 -12.41500 -12.35165 -12.14170 -11.99684 -11.64852 -11.18416 -10.80534 -10.67132 -10.49008 -10.06872 -9.31150 -8.13781 -6.25744 1.39647 1.41130 1.53093 1.67661 2.15009 2.41899 3.16408 3.18018 3.79318 4.00840 4.10328 4.17318 4.19590 4.25063 4.42275 4.52640 4.53816 4.57839 4.73770 4.86893 4.92621 4.96704 5.05984 5.07636 5.22729 5.27249 5.29380 5.34641 5.52091 5.60042 5.73441 5.88449 5.95661 6.14799 6.40202 6.63879 6.84617 7.33942 7.41956 8.95657 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037022 B = 0.005390 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.120954 B = 5193.799310 C = 5585.535078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.110 3.890 3 N -0.718 5.718 4 C 0.514 3.486 5 O -0.570 6.570 6 C 0.048 3.952 7 H 0.077 0.923 8 C -0.133 4.133 9 N -0.508 5.508 10 C 0.048 3.952 11 C -0.084 4.084 12 C 0.038 3.962 13 H -0.012 1.012 14 C -0.534 4.534 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.959 3.041 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.275 1.275 22 C 0.061 3.939 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.416 0.584 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.028 0.972 36 H 0.262 0.738 37 H 0.051 0.949 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.366 -0.532 -5.266 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 N -0.373 5.373 4 C 0.300 3.700 5 O -0.448 6.448 6 C -0.065 4.065 7 H 0.094 0.906 8 C -0.190 4.190 9 N -0.233 5.233 10 C -0.079 4.079 11 C -0.123 4.123 12 C 0.019 3.981 13 H 0.006 0.994 14 C -0.572 4.572 15 H 0.070 0.930 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.784 3.216 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.201 1.201 22 C -0.067 4.067 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.253 0.747 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -19.506 -1.492 -5.757 20.392 hybrid contribution 0.451 0.748 1.586 1.810 sum -19.054 -0.744 -4.171 19.520 Atomic orbital electron populations 1.21936 0.91268 1.04223 1.03489 1.21364 0.96546 0.82385 1.01030 1.45923 1.06042 1.09846 1.75489 1.20862 0.82763 0.91328 0.75066 1.90690 1.56715 1.47506 1.49861 1.21934 0.89856 0.92824 1.01847 0.90591 1.21826 1.02147 1.00627 0.94436 1.65244 1.06010 1.20146 1.31884 1.23133 0.95165 0.88671 1.00977 1.21968 0.94124 0.99228 0.96930 1.19342 0.90853 0.93152 0.94748 0.99374 1.21509 1.01189 1.40368 0.94150 0.92998 1.25785 0.96065 0.95740 1.00988 1.70136 1.07840 1.44316 1.33305 0.85496 0.78091 0.78028 0.79972 1.19146 1.20732 1.20061 1.22953 0.96409 0.98641 0.88648 0.91136 0.90650 0.89800 0.92789 0.93414 0.74713 0.88626 0.90220 0.92350 0.93213 0.89033 0.93582 0.95282 0.92930 0.93099 0.95222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.03 71.98 0.72 -0.84 16 2 C 0.11 2.14 6.39 86.38 0.55 2.69 16 3 N -0.72 -15.08 5.41 -463.05 -2.51 -17.59 16 4 C 0.51 16.26 6.96 87.65 0.61 16.87 16 5 O -0.57 -24.38 14.85 -3.05 -0.05 -24.43 16 6 C 0.05 1.42 2.31 44.17 0.10 1.52 16 7 H 0.08 2.09 7.88 -2.39 -0.02 2.07 16 8 C -0.13 -2.75 8.69 71.98 0.63 -2.12 16 9 N -0.51 -20.42 4.89 -860.28 -4.20 -24.62 16 10 C 0.05 1.82 5.15 86.42 0.45 2.26 16 11 C -0.08 -4.16 5.74 31.49 0.18 -3.98 16 12 C 0.04 2.11 2.99 -10.65 -0.03 2.08 16 13 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 14 C -0.53 -30.97 8.37 25.60 0.21 -30.75 16 15 H 0.05 2.96 7.59 -2.91 -0.02 2.93 16 16 C 0.01 0.76 5.09 84.65 0.43 1.19 16 17 N -0.92 -55.02 12.35 21.45 0.26 -54.76 16 18 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 C 0.06 2.93 5.34 86.45 0.46 3.39 16 23 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.42 5.48 7.83 -92.71 -0.73 4.75 16 29 H 0.10 1.24 7.41 -2.39 -0.02 1.22 16 30 H 0.08 1.50 7.17 -2.38 -0.02 1.48 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.73 8.00 -2.39 -0.02 1.71 16 33 H 0.09 3.01 7.79 -2.39 -0.02 2.99 16 34 H 0.05 2.44 7.24 -2.38 -0.02 2.42 16 35 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.26 14.80 8.31 -92.71 -0.77 14.02 16 37 H 0.05 2.63 6.92 -2.38 -0.02 2.61 16 38 H 0.03 1.38 7.39 -2.39 -0.02 1.36 16 Total: -1.00 -73.99 304.08 0.15 -73.83 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.30 Total: 8.60 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 4.31 Total: -7.68 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -6.44 Total: -96.97 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -73.99 0.15 -73.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397614097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.883 kcal (2) G-P(sol) polarization free energy of solvation -73.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds