Wall clock time and date at job start Mon Mar 30 2020 03:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47170 * 2 1 4 4 C 1.50701 * 109.47089 * 120.00234 * 2 1 3 5 5 O 1.21286 * 119.99903 * 90.56274 * 4 2 1 6 6 N 1.34773 * 120.00228 * 270.55633 * 4 2 1 7 7 C 1.46498 * 120.00179 * 184.21185 * 6 4 2 8 8 C 1.46502 * 119.99836 * 4.20881 * 6 4 2 9 9 N 1.46900 * 109.46944 * 240.00128 * 2 1 3 10 10 C 1.47893 * 111.00107 * 309.23009 * 9 2 1 11 11 C 1.53995 * 107.05884 * 214.15433 * 10 9 2 12 12 C 1.54598 * 105.13899 * 1.22458 * 11 10 9 13 13 H 1.08993 * 110.72638 * 263.41610 * 12 11 10 14 14 C 1.50701 * 110.72070 * 140.31130 * 12 11 10 15 15 H 1.07994 * 120.00401 * 241.45220 * 14 12 11 16 16 C 1.37886 * 119.99600 * 61.45804 * 14 12 11 17 17 N 1.31506 * 120.00396 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99463 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47010 * 90.00171 * 18 16 14 20 20 H 1.48501 * 109.46787 * 209.99952 * 18 16 14 21 21 H 1.48494 * 109.47494 * 330.00045 * 18 16 14 22 22 C 1.48536 * 111.00055 * 191.83360 * 9 2 1 23 23 H 1.09001 * 109.47056 * 306.05299 * 1 2 3 24 24 H 1.08996 * 109.47217 * 66.05126 * 1 2 3 25 25 H 1.08998 * 109.47086 * 186.05453 * 1 2 3 26 26 H 1.09007 * 109.47104 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.46963 * 300.00155 * 7 6 4 28 28 H 1.09001 * 109.47355 * 60.00111 * 7 6 4 29 29 H 1.08999 * 109.47777 * 275.00358 * 8 6 4 30 30 H 1.09003 * 109.47127 * 35.00296 * 8 6 4 31 31 H 1.09001 * 109.46956 * 154.99422 * 8 6 4 32 32 H 1.08998 * 109.91676 * 333.50821 * 10 9 2 33 33 H 1.09008 * 109.91847 * 94.80546 * 10 9 2 34 34 H 1.09000 * 110.30671 * 120.14306 * 11 10 9 35 35 H 1.08999 * 110.30884 * 242.30699 * 11 10 9 36 36 H 0.96999 * 120.00186 * 180.02562 * 17 16 14 37 37 H 1.09005 * 110.66488 * 278.15709 * 22 9 2 38 38 H 1.08999 * 110.66829 * 41.28612 * 22 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.2442 -1.9042 1.1974 6 7 2.2463 -0.0194 2.3675 7 6 2.8214 -0.6908 3.5356 8 6 1.9037 1.4034 2.4354 9 7 2.0196 -0.6925 -1.1995 10 6 1.3730 -2.0141 -1.3496 11 6 2.4186 -2.9610 -1.9673 12 6 3.6957 -2.1043 -2.1253 13 1 3.7713 -1.7077 -3.1377 14 6 4.9226 -2.9067 -1.7761 15 1 5.5544 -2.5982 -0.9563 16 6 5.2386 -4.0348 -2.5033 17 7 4.4696 -4.4103 -3.5019 18 14 6.7597 -5.0291 -2.0707 19 1 6.4028 -6.0726 -1.0763 20 1 7.2936 -5.6754 -3.2965 21 1 7.7920 -4.1297 -1.4956 22 6 3.4767 -0.9635 -1.1002 23 1 -0.3633 0.6048 0.8308 24 1 -0.3633 0.4171 -0.9392 25 1 -0.3633 -1.0219 0.1084 26 1 2.9191 0.0231 4.3536 27 1 2.1688 -1.5079 3.8429 28 1 3.8040 -1.0873 3.2797 29 1 2.7307 1.9955 2.0433 30 1 1.0092 1.5905 1.8412 31 1 1.7161 1.6829 3.4721 32 1 1.0631 -2.3888 -0.3740 33 1 0.5098 -1.9323 -2.0103 34 1 2.6074 -3.8025 -1.3007 35 1 2.0789 -3.3167 -2.9400 36 1 4.6917 -5.2041 -4.0132 37 1 4.0520 -0.0805 -1.3785 38 1 3.7389 -1.2938 -0.0951 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397615024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:35 Heat of formation + Delta-G solvation = -19.208663 kcal Electronic energy + Delta-G solvation = -18478.143549 eV Core-core repulsion = 15742.089341 eV Total energy + Delta-G solvation = -2736.054208 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33585 -37.33530 -35.30232 -33.67540 -31.72966 -28.51005 -28.28296 -27.72455 -26.21286 -24.15703 -22.92460 -20.42616 -19.28029 -18.61892 -17.01762 -16.42221 -15.79349 -15.53447 -14.67775 -14.41061 -14.28697 -13.59328 -13.45008 -13.01731 -12.80401 -12.67096 -12.34734 -12.00989 -11.87704 -11.67648 -11.42966 -11.25196 -10.95771 -10.70239 -10.54539 -10.36268 -10.09173 -9.77973 -9.41500 -9.09284 -8.65200 -8.51455 -8.25727 -7.56308 -5.89734 -3.91325 2.86658 3.13365 3.38223 3.43893 3.47350 4.48035 4.57889 4.81166 4.96555 5.18357 5.21891 5.27448 5.32618 5.44271 5.51154 5.61096 5.73677 5.83225 5.89616 6.04225 6.17814 6.33536 6.49211 6.51738 6.62380 6.78605 6.98151 7.26760 7.40092 7.41193 7.69179 7.77843 7.82870 8.02098 8.17213 8.42164 8.59769 9.09670 9.71210 11.20375 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030042 B = 0.007355 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.793185 B = 3806.211441 C = 4375.359666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.055 3.945 3 H 0.095 0.905 4 C 0.484 3.516 5 O -0.511 6.511 6 N -0.630 5.630 7 C 0.089 3.911 8 C 0.079 3.921 9 N -0.496 5.496 10 C 0.027 3.973 11 C -0.094 4.094 12 C 0.057 3.943 13 H 0.032 0.968 14 C -0.508 4.508 15 H 0.053 0.947 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.029 3.971 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.258 0.742 37 H 0.056 0.944 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 11.618 11.187 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.058 4.058 3 H 0.113 0.887 4 C 0.271 3.729 5 O -0.385 6.385 6 N -0.367 5.367 7 C -0.054 4.054 8 C -0.065 4.065 9 N -0.219 5.219 10 C -0.100 4.100 11 C -0.133 4.133 12 C 0.038 3.962 13 H 0.051 0.949 14 C -0.547 4.547 15 H 0.071 0.929 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.097 4.097 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.602 11.160 10.567 17.147 hybrid contribution 1.065 -0.996 1.076 1.812 sum -6.537 10.165 11.643 16.782 Atomic orbital electron populations 1.21811 0.92638 1.02798 1.02521 1.22084 0.96931 0.99342 0.87457 0.88728 1.22238 0.77685 0.88239 0.84725 1.90769 1.49857 1.14727 1.83161 1.48064 1.64569 1.10749 1.13326 1.21569 0.98974 0.97563 0.87252 1.21834 1.00878 0.81140 1.02604 1.65264 1.06648 1.20594 1.29383 1.23094 0.98006 0.88947 1.00000 1.22200 0.94794 0.97197 0.99085 1.19465 0.93155 0.90133 0.93457 0.94941 1.21071 1.08704 1.09556 1.15332 0.92924 1.24941 0.96565 0.97379 0.94999 1.69979 1.37862 1.24999 1.19967 0.86649 0.83523 0.80413 0.77727 1.20800 1.21281 1.20029 1.23586 0.85605 0.99308 1.01227 0.92428 0.90529 0.91850 0.91220 0.92441 0.92216 0.92643 0.91012 0.91144 0.92591 0.92791 0.92719 0.92653 0.93192 0.92537 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.60 37.16 0.32 -1.48 16 2 C 0.06 0.87 2.22 -68.86 -0.15 0.72 16 3 H 0.09 1.30 6.94 -51.93 -0.36 0.94 16 4 C 0.48 8.39 5.40 -10.99 -0.06 8.33 16 5 O -0.51 -11.24 12.52 5.55 0.07 -11.17 16 6 N -0.63 -8.43 3.27 -189.51 -0.62 -9.05 16 7 C 0.09 1.08 10.17 59.85 0.61 1.69 16 8 C 0.08 0.69 9.62 59.85 0.58 1.27 16 9 N -0.50 -10.00 5.39 -223.88 -1.21 -11.21 16 10 C 0.03 0.58 4.80 -2.76 -0.01 0.56 16 11 C -0.09 -2.43 5.51 -25.37 -0.14 -2.57 16 12 C 0.06 1.54 2.99 -89.91 -0.27 1.27 16 13 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.51 -14.93 8.42 -34.44 -0.29 -15.22 16 15 H 0.05 1.55 7.78 -52.49 -0.41 1.14 16 16 C 0.06 1.83 5.33 -17.82 -0.10 1.74 16 17 N -0.89 -26.81 12.44 55.43 0.69 -26.12 16 18 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.03 0.68 5.57 -1.90 -0.01 0.67 16 23 H 0.06 0.57 6.78 -51.93 -0.35 0.22 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.90 6.77 -51.93 -0.35 0.55 16 26 H 0.07 0.58 7.73 -51.93 -0.40 0.18 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.56 5.61 -51.93 -0.29 0.27 16 31 H 0.07 0.45 7.82 -51.93 -0.41 0.04 16 32 H 0.06 1.23 4.92 -51.93 -0.26 0.97 16 33 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 34 H 0.05 1.55 7.84 -51.93 -0.41 1.14 16 35 H 0.05 1.48 8.05 -51.93 -0.42 1.06 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 1.28 5.25 -51.93 -0.27 1.00 16 LS Contribution 293.91 15.07 4.43 4.43 Total: -1.00 -33.57 293.91 -7.21 -40.78 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.02 Total: -2.04 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 0.47 Total: -3.03 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -1.14 Total: -46.37 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.57 -7.21 -40.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397615024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.566 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds