Wall clock time and date at job start Mon Mar 30 2020 03:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47170 * 2 1 4 4 C 1.50701 * 109.47089 * 120.00234 * 2 1 3 5 5 O 1.21286 * 119.99903 * 90.56274 * 4 2 1 6 6 N 1.34773 * 120.00228 * 270.55633 * 4 2 1 7 7 C 1.46498 * 120.00179 * 184.21185 * 6 4 2 8 8 C 1.46502 * 119.99836 * 4.20881 * 6 4 2 9 9 N 1.46900 * 109.46944 * 240.00128 * 2 1 3 10 10 C 1.47893 * 111.00107 * 309.23009 * 9 2 1 11 11 C 1.53995 * 107.05884 * 214.15433 * 10 9 2 12 12 C 1.54598 * 105.13899 * 1.22458 * 11 10 9 13 13 H 1.08993 * 110.72638 * 263.41610 * 12 11 10 14 14 C 1.50701 * 110.72070 * 140.31130 * 12 11 10 15 15 H 1.07994 * 120.00401 * 241.45220 * 14 12 11 16 16 C 1.37886 * 119.99600 * 61.45804 * 14 12 11 17 17 N 1.31506 * 120.00396 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99463 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47010 * 90.00171 * 18 16 14 20 20 H 1.48501 * 109.46787 * 209.99952 * 18 16 14 21 21 H 1.48494 * 109.47494 * 330.00045 * 18 16 14 22 22 C 1.48536 * 111.00055 * 191.83360 * 9 2 1 23 23 H 1.09001 * 109.47056 * 306.05299 * 1 2 3 24 24 H 1.08996 * 109.47217 * 66.05126 * 1 2 3 25 25 H 1.08998 * 109.47086 * 186.05453 * 1 2 3 26 26 H 1.09007 * 109.47104 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.46963 * 300.00155 * 7 6 4 28 28 H 1.09001 * 109.47355 * 60.00111 * 7 6 4 29 29 H 1.08999 * 109.47777 * 275.00358 * 8 6 4 30 30 H 1.09003 * 109.47127 * 35.00296 * 8 6 4 31 31 H 1.09001 * 109.46956 * 154.99422 * 8 6 4 32 32 H 1.08998 * 109.91676 * 333.50821 * 10 9 2 33 33 H 1.09008 * 109.91847 * 94.80546 * 10 9 2 34 34 H 1.09000 * 110.30671 * 120.14306 * 11 10 9 35 35 H 1.08999 * 110.30884 * 242.30699 * 11 10 9 36 36 H 0.96999 * 120.00186 * 180.02562 * 17 16 14 37 37 H 1.09005 * 110.66488 * 278.15709 * 22 9 2 38 38 H 1.08999 * 110.66829 * 41.28612 * 22 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.2442 -1.9042 1.1974 6 7 2.2463 -0.0194 2.3675 7 6 2.8214 -0.6908 3.5356 8 6 1.9037 1.4034 2.4354 9 7 2.0196 -0.6925 -1.1995 10 6 1.3730 -2.0141 -1.3496 11 6 2.4186 -2.9610 -1.9673 12 6 3.6957 -2.1043 -2.1253 13 1 3.7713 -1.7077 -3.1377 14 6 4.9226 -2.9067 -1.7761 15 1 5.5544 -2.5982 -0.9563 16 6 5.2386 -4.0348 -2.5033 17 7 4.4696 -4.4103 -3.5019 18 14 6.7597 -5.0291 -2.0707 19 1 6.4028 -6.0726 -1.0763 20 1 7.2936 -5.6754 -3.2965 21 1 7.7920 -4.1297 -1.4956 22 6 3.4767 -0.9635 -1.1002 23 1 -0.3633 0.6048 0.8308 24 1 -0.3633 0.4171 -0.9392 25 1 -0.3633 -1.0219 0.1084 26 1 2.9191 0.0231 4.3536 27 1 2.1688 -1.5079 3.8429 28 1 3.8040 -1.0873 3.2797 29 1 2.7307 1.9955 2.0433 30 1 1.0092 1.5905 1.8412 31 1 1.7161 1.6829 3.4721 32 1 1.0631 -2.3888 -0.3740 33 1 0.5098 -1.9323 -2.0103 34 1 2.6074 -3.8025 -1.3007 35 1 2.0789 -3.3167 -2.9400 36 1 4.6917 -5.2041 -4.0132 37 1 4.0520 -0.0805 -1.3785 38 1 3.7389 -1.2938 -0.0951 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397615024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:34 Heat of formation + Delta-G solvation = -44.275124 kcal Electronic energy + Delta-G solvation = -18479.230512 eV Core-core repulsion = 15742.089341 eV Total energy + Delta-G solvation = -2737.141172 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.71306 -38.92844 -36.52886 -35.50754 -33.58869 -30.11308 -30.07989 -28.81922 -27.26063 -26.23203 -24.26080 -22.09540 -21.29879 -19.92850 -18.42468 -18.25825 -17.28880 -16.74937 -16.57752 -16.08501 -15.88883 -14.99611 -14.75274 -14.49506 -14.24668 -13.65730 -13.52763 -13.27037 -13.20160 -13.08184 -13.04010 -12.96475 -12.66263 -12.61193 -12.36304 -12.03370 -11.94049 -11.55671 -11.16141 -11.13194 -10.81750 -10.51105 -9.64826 -9.18302 -8.15590 -6.25315 1.35363 1.37272 1.47420 1.58427 2.10628 2.39590 3.08191 3.15725 3.65618 3.95136 4.10067 4.22348 4.29541 4.39460 4.44909 4.46649 4.54401 4.68884 4.71086 4.79790 4.85834 4.87461 4.94268 4.96947 5.00891 5.20480 5.29630 5.36371 5.57228 5.59030 5.74365 5.84147 5.97653 6.11132 6.37395 6.38834 6.82454 7.18852 7.40927 8.94239 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030042 B = 0.007355 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.793185 B = 3806.211441 C = 4375.359666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.052 3.948 3 H 0.126 0.874 4 C 0.476 3.524 5 O -0.572 6.572 6 N -0.624 5.624 7 C 0.087 3.913 8 C 0.068 3.932 9 N -0.493 5.493 10 C 0.042 3.958 11 C -0.085 4.085 12 C 0.047 3.953 13 H 0.005 0.995 14 C -0.532 4.532 15 H 0.045 0.955 16 C 0.012 3.988 17 N -0.918 5.918 18 Si 0.955 3.045 19 H -0.280 1.280 20 H -0.276 1.276 21 H -0.266 1.266 22 C 0.046 3.954 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.044 0.956 26 H 0.114 0.886 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.017 0.983 35 H 0.036 0.964 36 H 0.262 0.738 37 H 0.068 0.932 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 13.821 12.677 20.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.061 4.061 3 H 0.143 0.857 4 C 0.264 3.736 5 O -0.451 6.451 6 N -0.359 5.359 7 C -0.056 4.056 8 C -0.074 4.074 9 N -0.216 5.216 10 C -0.085 4.085 11 C -0.124 4.124 12 C 0.028 3.972 13 H 0.023 0.977 14 C -0.571 4.571 15 H 0.063 0.937 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.780 3.220 19 H -0.206 1.206 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.082 4.082 23 H 0.113 0.887 24 H 0.106 0.894 25 H 0.063 0.937 26 H 0.132 0.868 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.147 13.431 12.091 19.823 hybrid contribution 1.210 -1.605 0.677 2.121 sum -6.937 11.826 12.768 18.735 Atomic orbital electron populations 1.21821 0.89961 1.02587 1.04796 1.22332 0.99057 0.99630 0.85070 0.85671 1.22439 0.77362 0.87658 0.86180 1.90748 1.52777 1.17287 1.84303 1.48153 1.62828 1.12556 1.12331 1.21675 0.97294 0.98635 0.87996 1.22209 1.01877 0.78030 1.05248 1.65217 1.04541 1.19378 1.32505 1.22885 0.97081 0.88791 0.99761 1.21966 0.96050 0.96934 0.97409 1.19423 0.93027 0.91638 0.93076 0.97683 1.21375 1.09745 1.10555 1.15382 0.93685 1.25766 0.99723 0.98364 0.94812 1.70097 1.39413 1.25435 1.20710 0.85603 0.79798 0.78764 0.77796 1.20573 1.20082 1.19091 1.23260 0.88004 0.98070 0.98831 0.88687 0.89365 0.93685 0.86752 0.93466 0.94630 0.91684 0.89505 0.87995 0.92938 0.90600 0.96379 0.94548 0.92958 0.91329 0.94664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.60 71.98 0.62 -2.38 16 2 C 0.05 1.51 2.22 44.17 0.10 1.61 16 3 H 0.13 2.92 6.94 -2.38 -0.02 2.91 16 4 C 0.48 15.95 5.40 87.66 0.47 16.42 16 5 O -0.57 -25.74 12.52 -3.05 -0.04 -25.77 16 6 N -0.62 -15.16 3.27 -871.88 -2.85 -18.02 16 7 C 0.09 1.95 10.17 127.77 1.30 3.25 16 8 C 0.07 0.88 9.62 127.77 1.23 2.10 16 9 N -0.49 -19.52 5.39 -862.24 -4.65 -24.17 16 10 C 0.04 1.84 4.80 86.45 0.41 2.26 16 11 C -0.08 -4.60 5.51 31.47 0.17 -4.43 16 12 C 0.05 2.67 2.99 -10.33 -0.03 2.64 16 13 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 14 C -0.53 -32.42 8.42 25.60 0.22 -32.21 16 15 H 0.04 2.73 7.78 -2.91 -0.02 2.71 16 16 C 0.01 0.73 5.33 84.66 0.45 1.18 16 17 N -0.92 -56.98 12.44 21.45 0.27 -56.72 16 18 Si 0.96 46.90 29.54 68.60 2.03 48.93 16 19 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 22 C 0.05 2.14 5.57 86.65 0.48 2.63 16 23 H 0.09 1.42 6.78 -2.39 -0.02 1.40 16 24 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.04 1.19 6.77 -2.39 -0.02 1.17 16 26 H 0.11 1.50 7.73 -2.38 -0.02 1.48 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.89 5.61 -2.39 -0.01 0.88 16 31 H 0.10 0.74 7.82 -2.39 -0.02 0.72 16 32 H 0.05 2.35 4.92 -2.39 -0.01 2.34 16 33 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 34 H 0.02 1.06 7.84 -2.39 -0.02 1.04 16 35 H 0.04 2.04 8.05 -2.39 -0.02 2.02 16 36 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 38 H 0.04 1.78 5.25 -2.39 -0.01 1.77 16 Total: -1.00 -77.10 293.91 1.20 -75.90 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.03 Total: 6.77 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 5.43 Total: -6.92 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -7.24 Total: -98.90 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.04 Total: -25.77 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -77.10 1.20 -75.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397615024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.620 kcal (2) G-P(sol) polarization free energy of solvation -77.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds