Wall clock time and date at job start Mon Mar 30 2020 03:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47152 * 2 1 4 4 C 1.52994 * 109.47253 * 240.00210 * 2 1 3 5 5 N 1.46906 * 109.47352 * 173.06533 * 4 2 1 6 6 C 1.46846 * 111.00045 * 77.29480 * 5 4 2 7 7 C 1.53036 * 109.52320 * 174.16471 * 6 5 4 8 8 C 1.53119 * 109.27763 * 59.17817 * 7 6 5 9 9 C 1.53122 * 109.16290 * 302.34608 * 8 7 6 10 10 H 1.09004 * 109.50141 * 297.67589 * 9 8 7 11 11 C 1.50696 * 109.50391 * 177.59708 * 9 8 7 12 12 H 1.07998 * 120.00185 * 240.00045 * 11 9 8 13 13 C 1.37878 * 120.00119 * 60.00117 * 11 9 8 14 14 N 1.31518 * 120.00081 * 0.02562 * 13 11 9 15 15 Si 1.86794 * 119.99997 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47128 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47094 * 119.99930 * 15 13 11 18 18 H 1.48502 * 109.47200 * 239.99980 * 15 13 11 19 19 C 1.46846 * 110.99626 * 313.08856 * 5 4 2 20 20 C 1.50699 * 109.47124 * 119.99758 * 2 1 3 21 21 N 1.34780 * 120.00226 * 258.15242 * 20 2 1 22 22 O 1.21280 * 119.99762 * 78.14900 * 20 2 1 23 23 H 1.09002 * 109.47297 * 299.69947 * 1 2 3 24 24 H 1.09004 * 109.46968 * 59.69587 * 1 2 3 25 25 H 1.08998 * 109.46821 * 179.69358 * 1 2 3 26 26 H 1.09004 * 109.46766 * 293.06125 * 4 2 1 27 27 H 1.09000 * 109.47541 * 53.06008 * 4 2 1 28 28 H 1.09004 * 109.46103 * 294.17854 * 6 5 4 29 29 H 1.09002 * 109.46281 * 54.15571 * 6 5 4 30 30 H 1.08993 * 109.50587 * 179.12067 * 7 6 5 31 31 H 1.09001 * 109.50280 * 299.23638 * 7 6 5 32 32 H 1.08993 * 109.52066 * 62.25578 * 8 7 6 33 33 H 1.09007 * 109.52251 * 182.38048 * 8 7 6 34 34 H 0.96992 * 120.00035 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.46205 * 305.85122 * 19 5 4 36 36 H 1.08995 * 109.46732 * 65.81863 * 19 5 4 37 37 H 0.97004 * 119.99302 * 359.97438 * 21 20 2 38 38 H 0.96997 * 120.00279 * 179.97438 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.4995 -0.5780 -1.3358 6 6 4.1739 -1.4885 -0.4016 7 6 5.6868 -1.4178 -0.6210 8 6 6.1637 0.0197 -0.3959 9 6 5.4110 0.9538 -1.3475 10 1 5.6418 0.6857 -2.3786 11 6 5.8317 2.3781 -1.0917 12 1 5.0986 3.1119 -0.7910 13 6 7.1524 2.7444 -1.2417 14 7 8.0451 1.8509 -1.6084 15 14 7.6736 4.5100 -0.9253 16 1 6.4888 5.3123 -0.5282 17 1 8.6802 4.5410 0.1662 18 1 8.2664 5.0803 -2.1617 19 6 3.9062 0.8143 -1.1070 20 6 2.0323 -0.7103 1.2305 21 7 2.4829 0.0012 2.2827 22 8 2.0311 -1.9224 1.2739 23 1 -0.3634 0.5092 0.8927 24 1 -0.3633 0.5186 -0.8873 25 1 -0.3633 -1.0277 -0.0055 26 1 1.7816 -1.7784 -1.1893 27 1 1.5789 -0.2841 -2.1349 28 1 3.9414 -1.1958 0.6224 29 1 3.8291 -2.5078 -0.5751 30 1 6.1880 -2.0820 0.0831 31 1 5.9213 -1.7236 -1.6406 32 1 5.9645 0.3123 0.6350 33 1 7.2340 0.0834 -0.5923 34 1 8.9743 2.1085 -1.7135 35 1 3.3668 1.4676 -1.7929 36 1 3.6749 1.0962 -0.0798 37 1 2.4842 0.9706 2.2477 38 1 2.8059 -0.4560 3.0749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397668505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:50 Heat of formation + Delta-G solvation = -49.540887 kcal Electronic energy + Delta-G solvation = -18557.095983 eV Core-core repulsion = 15819.726471 eV Total energy + Delta-G solvation = -2737.369512 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.23381 -37.65373 -34.58682 -33.53557 -32.72964 -30.83479 -29.83228 -25.76641 -24.93670 -24.08527 -21.89000 -21.23121 -19.71785 -18.46084 -17.03204 -16.84630 -16.35913 -15.22415 -14.81916 -14.48753 -14.24003 -13.87978 -13.37398 -13.16727 -12.68976 -12.44458 -12.31208 -12.15717 -11.78592 -11.53425 -11.20020 -11.04116 -10.95797 -10.63668 -10.45567 -10.01750 -9.79611 -9.70329 -9.52701 -9.44623 -8.99379 -8.67855 -8.30435 -7.55758 -5.97733 -4.04432 2.78083 3.28049 3.36428 3.38701 3.65061 4.39692 4.63827 4.80473 4.95376 5.22948 5.32237 5.46346 5.61996 5.70979 5.83670 5.90300 6.01625 6.02696 6.13618 6.28822 6.33933 6.41974 6.57670 6.78755 6.80863 6.87704 6.99326 7.25364 7.41222 7.44338 7.72513 7.75569 7.86472 8.09585 8.18953 8.38892 8.47733 9.00127 9.59866 11.08159 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030259 B = 0.007203 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.130505 B = 3886.314167 C = 4155.285680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.157 4.157 3 H 0.097 0.903 4 C 0.069 3.931 5 N -0.536 5.536 6 C 0.059 3.941 7 C -0.120 4.120 8 C -0.108 4.108 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.514 4.514 12 H 0.053 0.947 13 C 0.063 3.937 14 N -0.887 5.887 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.064 3.936 20 C 0.532 3.468 21 N -0.856 5.856 22 O -0.548 6.548 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.032 0.968 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.027 0.973 33 H 0.089 0.911 34 H 0.259 0.741 35 H 0.059 0.941 36 H 0.020 0.980 37 H 0.402 0.598 38 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.526 -2.266 4.840 12.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.180 4.180 3 H 0.115 0.885 4 C -0.061 4.061 5 N -0.259 5.259 6 C -0.069 4.069 7 C -0.158 4.158 8 C -0.146 4.146 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.553 4.553 12 H 0.071 0.929 13 C -0.139 4.139 14 N -0.526 5.526 15 Si 0.717 3.283 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.210 1.210 19 C -0.063 4.063 20 C 0.318 3.682 21 N -0.419 5.419 22 O -0.425 6.425 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.230 0.770 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -11.252 -3.196 4.158 12.415 hybrid contribution 0.328 1.585 1.433 2.162 sum -10.924 -1.611 5.591 12.377 Atomic orbital electron populations 1.21625 0.92571 1.02700 1.02278 1.22146 0.98008 1.02264 0.95581 0.88481 1.22224 0.89281 1.00594 0.93970 1.62171 1.03868 1.07836 1.52007 1.22259 0.95348 0.95574 0.93681 1.21715 0.93700 0.99616 1.00759 1.21624 1.03801 0.91191 0.97977 1.18669 0.87244 0.94314 0.96242 0.94811 1.21167 0.93404 0.94454 1.46252 0.92869 1.24944 0.96776 0.97004 0.95153 1.69907 1.02153 1.33073 1.47436 0.86595 0.78545 0.85324 0.77838 1.19896 1.21152 1.21033 1.22364 1.00302 0.86127 0.97465 1.20471 0.75567 0.87764 0.84417 1.43983 1.67656 1.11218 1.18999 1.90720 1.55723 1.14044 1.82027 0.92712 0.91254 0.91897 0.90317 0.90195 0.94953 0.92230 0.93776 0.92235 0.95456 0.89235 0.93108 0.92298 0.96214 0.76996 0.77177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.17 37.16 0.34 -1.08 16 2 C -0.16 -2.12 2.25 -91.78 -0.21 -2.33 16 3 H 0.10 1.31 5.89 -51.93 -0.31 1.01 16 4 C 0.07 1.06 5.05 -3.82 -0.02 1.04 16 5 N -0.54 -10.16 4.86 -234.67 -1.14 -11.30 16 6 C 0.06 1.15 4.12 -3.83 -0.02 1.14 16 7 C -0.12 -2.52 6.09 -26.65 -0.16 -2.68 16 8 C -0.11 -2.59 5.02 -26.61 -0.13 -2.72 16 9 C 0.05 1.34 2.26 -91.69 -0.21 1.14 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.51 -13.78 8.56 -34.44 -0.29 -14.07 16 12 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 13 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -25.25 11.35 55.43 0.63 -24.62 16 15 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.06 1.32 3.65 -3.84 -0.01 1.31 16 20 C 0.53 7.97 4.18 -10.98 -0.05 7.93 16 21 N -0.86 -10.30 8.81 31.22 0.28 -10.03 16 22 O -0.55 -9.98 15.55 5.56 0.09 -9.89 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.25 7.36 -51.93 -0.38 0.87 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.63 4.76 -51.93 -0.25 0.39 16 29 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 2.41 6.15 -51.92 -0.32 2.09 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 36 H 0.02 0.39 6.28 -51.93 -0.33 0.06 16 37 H 0.40 4.04 8.75 -40.82 -0.36 3.68 16 38 H 0.40 4.34 8.93 -40.82 -0.36 3.98 16 LS Contribution 292.44 15.07 4.41 4.41 Total: -1.00 -30.52 292.44 -7.68 -38.20 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.06 Total: 6.07 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -0.85 Total: -8.72 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.24 Total: -45.95 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.52 -7.68 -38.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397668505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.343 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds