Wall clock time and date at job start Mon Mar 30 2020 03:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47096 * 2 1 4 4 C 1.52994 * 109.47167 * 120.00569 * 2 1 3 5 5 N 1.46902 * 109.47263 * 294.99852 * 4 2 1 6 6 C 1.46843 * 110.99828 * 293.95431 * 5 4 2 7 7 C 1.53034 * 109.52448 * 174.15931 * 6 5 4 8 8 C 1.53119 * 109.28001 * 59.17729 * 7 6 5 9 9 C 1.53119 * 109.16011 * 302.35003 * 8 7 6 10 10 H 1.08997 * 109.50396 * 297.66808 * 9 8 7 11 11 C 1.50705 * 109.50006 * 177.59105 * 9 8 7 12 12 H 1.07997 * 120.00415 * 335.21377 * 11 9 8 13 13 C 1.37875 * 119.99770 * 155.21197 * 11 9 8 14 14 N 1.31521 * 119.99924 * 355.16755 * 13 11 9 15 15 Si 1.86802 * 119.99989 * 175.16024 * 13 11 9 16 16 H 1.48497 * 109.47075 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47404 * 239.99865 * 15 13 11 18 18 H 1.48503 * 109.46626 * 120.00261 * 15 13 11 19 19 C 1.46842 * 111.00177 * 169.74630 * 5 4 2 20 20 C 1.50703 * 109.46910 * 240.00489 * 2 1 3 21 21 N 1.34778 * 120.00070 * 59.99434 * 20 2 1 22 22 O 1.21280 * 119.99851 * 240.00200 * 20 2 1 23 23 H 1.08997 * 109.47096 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46447 * 299.99564 * 1 2 3 25 25 H 1.08996 * 109.47131 * 59.99489 * 1 2 3 26 26 H 1.09001 * 109.46948 * 174.99822 * 4 2 1 27 27 H 1.09003 * 109.47623 * 54.99745 * 4 2 1 28 28 H 1.09000 * 109.46059 * 54.14536 * 6 5 4 29 29 H 1.08998 * 109.46278 * 294.17761 * 6 5 4 30 30 H 1.09007 * 109.50420 * 299.23781 * 7 6 5 31 31 H 1.09000 * 109.54119 * 179.14361 * 7 6 5 32 32 H 1.08996 * 109.52886 * 182.44027 * 8 7 6 33 33 H 1.09004 * 109.57387 * 62.28315 * 8 7 6 34 34 H 0.96996 * 120.00260 * 5.17977 * 14 13 11 35 35 H 1.09001 * 109.46302 * 65.81801 * 19 5 4 36 36 H 1.09004 * 109.46385 * 305.85343 * 19 5 4 37 37 H 0.97003 * 119.99691 * 0.02562 * 21 20 2 38 38 H 0.96996 * 120.00418 * 179.97438 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6515 0.0372 2.4456 6 6 2.3340 1.3367 2.4895 7 6 1.7983 2.1563 3.6656 8 6 2.0388 1.3882 4.9682 9 6 1.3584 0.0195 4.8775 10 1 0.2825 0.1546 4.7664 11 6 1.6399 -0.7664 6.1322 12 1 2.5196 -0.5489 6.7197 13 6 0.7743 -1.7630 6.5302 14 7 -0.3447 -1.9647 5.8692 15 14 1.1909 -2.8270 8.0080 16 1 2.4963 -2.4003 8.5728 17 1 1.2742 -4.2486 7.5868 18 1 0.1331 -2.6775 9.0394 19 6 1.9069 -0.7381 3.6662 20 6 2.0324 -0.7103 -1.2306 21 7 1.7067 -0.2498 -2.4546 22 8 2.7296 -1.6964 -1.1194 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 3.1264 -0.7996 1.2054 27 1 1.6055 -1.7199 1.2950 28 1 2.1514 1.8743 1.5591 29 1 3.4055 1.1801 2.6140 30 1 0.7294 2.3250 3.5347 31 1 2.3155 3.1148 3.7075 32 1 1.6200 1.9485 5.8041 33 1 3.1097 1.2533 5.1202 34 1 -0.5262 -1.4641 5.0585 35 1 2.9804 -0.8850 3.7853 36 1 1.4141 -1.7074 3.5906 37 1 1.1492 0.5391 -2.5435 38 1 2.0302 -0.7068 -3.2467 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397668510.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:55 Heat of formation + Delta-G solvation = -61.951461 kcal Electronic energy + Delta-G solvation = -17946.502608 eV Core-core repulsion = 15208.594933 eV Total energy + Delta-G solvation = -2737.907675 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.83776 -38.20424 -34.78818 -33.79526 -32.75886 -31.14993 -29.42671 -26.11790 -24.53706 -23.89739 -21.92726 -21.46832 -19.55935 -18.89157 -17.42899 -16.97048 -16.51968 -15.30374 -14.88753 -14.31526 -14.05739 -13.73453 -13.66207 -13.49374 -13.20394 -12.71278 -12.30974 -11.99045 -11.89999 -11.32740 -11.26623 -10.94930 -10.84090 -10.71277 -10.40421 -10.14849 -10.06853 -9.80004 -9.78717 -9.55661 -9.10923 -8.46389 -8.22915 -7.64372 -6.29231 -4.01322 2.62542 3.42922 3.47169 3.50586 3.64031 4.48984 4.60346 4.80653 4.97664 5.16760 5.35733 5.43090 5.55792 5.61851 5.76655 5.87759 5.93443 6.06110 6.09791 6.27987 6.30881 6.38806 6.42815 6.57382 6.61276 6.66600 6.82589 6.87253 6.94910 7.21443 7.50102 7.60799 7.78076 7.81505 8.21083 8.35831 8.51801 8.96035 9.71901 11.09654 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030427 B = 0.005992 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.026612 B = 4671.997563 C = 5131.955687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 H 0.096 0.904 4 C 0.073 3.927 5 N -0.538 5.538 6 C 0.058 3.942 7 C -0.116 4.116 8 C -0.105 4.105 9 C 0.036 3.964 10 H 0.039 0.961 11 C -0.596 4.596 12 H 0.048 0.952 13 C 0.022 3.978 14 N -0.912 5.912 15 Si 1.069 2.931 16 H -0.290 1.290 17 H -0.288 1.288 18 H -0.287 1.287 19 C 0.070 3.930 20 C 0.521 3.479 21 N -0.859 5.859 22 O -0.543 6.543 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.274 0.726 35 H 0.017 0.983 36 H 0.065 0.935 37 H 0.400 0.600 38 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 7.450 -13.759 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.130 4.130 3 H 0.114 0.886 4 C -0.055 4.055 5 N -0.263 5.263 6 C -0.070 4.070 7 C -0.154 4.154 8 C -0.143 4.143 9 C 0.017 3.983 10 H 0.058 0.942 11 C -0.635 4.635 12 H 0.066 0.934 13 C -0.183 4.183 14 N -0.548 5.548 15 Si 0.899 3.101 16 H -0.216 1.216 17 H -0.214 1.214 18 H -0.214 1.214 19 C -0.057 4.057 20 C 0.306 3.694 21 N -0.422 5.422 22 O -0.419 6.419 23 H 0.076 0.924 24 H 0.103 0.897 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.035 0.965 36 H 0.083 0.917 37 H 0.229 0.771 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.403 5.694 -12.527 13.832 hybrid contribution 1.431 1.250 -1.454 2.393 sum 2.834 6.945 -13.981 15.866 Atomic orbital electron populations 1.21663 0.92011 1.02780 1.02600 1.21334 0.98601 1.00588 0.92470 0.88605 1.21812 0.98056 0.97242 0.88437 1.62078 1.57713 1.03811 1.02681 1.22040 0.95444 0.91350 0.98140 1.21624 1.00977 0.97048 0.95717 1.21599 0.99753 0.98098 0.94840 1.18869 0.96379 0.90763 0.92254 0.94242 1.21996 1.11808 1.20316 1.09332 0.93411 1.25782 0.93045 0.96827 1.02640 1.70708 1.22901 1.43088 1.18122 0.83544 0.75275 0.76025 0.75304 1.21624 1.21419 1.21388 1.22517 0.97755 0.97223 0.88239 1.20862 0.79027 0.84143 0.85345 1.43899 1.56320 1.33943 1.08078 1.90743 1.37794 1.26395 1.86988 0.92360 0.89673 0.93339 0.94753 0.90392 0.92186 0.95862 0.91838 0.93163 0.93088 0.93936 0.91419 0.96501 0.91693 0.77135 0.77214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.98 37.16 0.33 -1.25 16 2 C -0.11 -1.41 2.65 -91.77 -0.24 -1.65 16 3 H 0.10 1.10 6.23 -51.93 -0.32 0.78 16 4 C 0.07 1.26 3.70 -3.83 -0.01 1.24 16 5 N -0.54 -10.11 4.11 -234.68 -0.96 -11.08 16 6 C 0.06 0.97 5.30 -3.84 -0.02 0.95 16 7 C -0.12 -2.00 6.09 -26.65 -0.16 -2.16 16 8 C -0.11 -2.23 5.26 -26.61 -0.14 -2.37 16 9 C 0.04 0.91 1.99 -91.69 -0.18 0.72 16 10 H 0.04 1.07 6.67 -51.93 -0.35 0.73 16 11 C -0.60 -16.66 8.32 -34.44 -0.29 -16.95 16 12 H 0.05 1.35 7.81 -52.49 -0.41 0.94 16 13 C 0.02 0.62 5.45 -17.82 -0.10 0.53 16 14 N -0.91 -27.42 13.63 55.43 0.76 -26.66 16 15 Si 1.07 25.45 29.91 -169.99 -5.08 20.36 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 C 0.07 1.60 4.72 -3.84 -0.02 1.58 16 20 C 0.52 6.90 7.43 -10.98 -0.08 6.82 16 21 N -0.86 -7.21 8.77 31.22 0.27 -6.93 16 22 O -0.54 -9.68 16.76 5.56 0.09 -9.58 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.08 1.15 7.75 -51.93 -0.40 0.75 16 25 H 0.05 0.42 7.56 -51.93 -0.39 0.03 16 26 H 0.03 0.63 7.93 -51.93 -0.41 0.21 16 27 H 0.08 1.47 7.98 -51.93 -0.41 1.05 16 28 H 0.06 0.83 6.13 -51.93 -0.32 0.52 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.27 8.22 6.66 -40.82 -0.27 7.95 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 1.65 8.01 -51.93 -0.42 1.23 16 37 H 0.40 2.18 8.25 -40.82 -0.34 1.84 16 38 H 0.40 2.88 8.93 -40.82 -0.36 2.51 16 LS Contribution 301.30 15.07 4.54 4.54 Total: -1.00 -32.33 301.30 -7.46 -39.79 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.16 Total: 2.10 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.91 Total: -12.53 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.06 Total: -44.67 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.33 -7.46 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397668510.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.163 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds