Wall clock time and date at job start Mon Mar 30 2020 03:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47096 * 2 1 4 4 C 1.52994 * 109.47167 * 120.00569 * 2 1 3 5 5 N 1.46902 * 109.47263 * 294.99852 * 4 2 1 6 6 C 1.46843 * 110.99828 * 293.95431 * 5 4 2 7 7 C 1.53034 * 109.52448 * 174.15931 * 6 5 4 8 8 C 1.53119 * 109.28001 * 59.17729 * 7 6 5 9 9 C 1.53119 * 109.16011 * 302.35003 * 8 7 6 10 10 H 1.08997 * 109.50396 * 297.66808 * 9 8 7 11 11 C 1.50705 * 109.50006 * 177.59105 * 9 8 7 12 12 H 1.07997 * 120.00415 * 335.21377 * 11 9 8 13 13 C 1.37875 * 119.99770 * 155.21197 * 11 9 8 14 14 N 1.31521 * 119.99924 * 355.16755 * 13 11 9 15 15 Si 1.86802 * 119.99989 * 175.16024 * 13 11 9 16 16 H 1.48497 * 109.47075 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47404 * 239.99865 * 15 13 11 18 18 H 1.48503 * 109.46626 * 120.00261 * 15 13 11 19 19 C 1.46842 * 111.00177 * 169.74630 * 5 4 2 20 20 C 1.50703 * 109.46910 * 240.00489 * 2 1 3 21 21 N 1.34778 * 120.00070 * 59.99434 * 20 2 1 22 22 O 1.21280 * 119.99851 * 240.00200 * 20 2 1 23 23 H 1.08997 * 109.47096 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46447 * 299.99564 * 1 2 3 25 25 H 1.08996 * 109.47131 * 59.99489 * 1 2 3 26 26 H 1.09001 * 109.46948 * 174.99822 * 4 2 1 27 27 H 1.09003 * 109.47623 * 54.99745 * 4 2 1 28 28 H 1.09000 * 109.46059 * 54.14536 * 6 5 4 29 29 H 1.08998 * 109.46278 * 294.17761 * 6 5 4 30 30 H 1.09007 * 109.50420 * 299.23781 * 7 6 5 31 31 H 1.09000 * 109.54119 * 179.14361 * 7 6 5 32 32 H 1.08996 * 109.52886 * 182.44027 * 8 7 6 33 33 H 1.09004 * 109.57387 * 62.28315 * 8 7 6 34 34 H 0.96996 * 120.00260 * 5.17977 * 14 13 11 35 35 H 1.09001 * 109.46302 * 65.81801 * 19 5 4 36 36 H 1.09004 * 109.46385 * 305.85343 * 19 5 4 37 37 H 0.97003 * 119.99691 * 0.02562 * 21 20 2 38 38 H 0.96996 * 120.00418 * 179.97438 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6515 0.0372 2.4456 6 6 2.3340 1.3367 2.4895 7 6 1.7983 2.1563 3.6656 8 6 2.0388 1.3882 4.9682 9 6 1.3584 0.0195 4.8775 10 1 0.2825 0.1546 4.7664 11 6 1.6399 -0.7664 6.1322 12 1 2.5196 -0.5489 6.7197 13 6 0.7743 -1.7630 6.5302 14 7 -0.3447 -1.9647 5.8692 15 14 1.1909 -2.8270 8.0080 16 1 2.4963 -2.4003 8.5728 17 1 1.2742 -4.2486 7.5868 18 1 0.1331 -2.6775 9.0394 19 6 1.9069 -0.7381 3.6662 20 6 2.0324 -0.7103 -1.2306 21 7 1.7067 -0.2498 -2.4546 22 8 2.7296 -1.6964 -1.1194 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 3.1264 -0.7996 1.2054 27 1 1.6055 -1.7199 1.2950 28 1 2.1514 1.8743 1.5591 29 1 3.4055 1.1801 2.6140 30 1 0.7294 2.3250 3.5347 31 1 2.3155 3.1148 3.7075 32 1 1.6200 1.9485 5.8041 33 1 3.1097 1.2533 5.1202 34 1 -0.5262 -1.4641 5.0585 35 1 2.9804 -0.8850 3.7853 36 1 1.4141 -1.7074 3.5906 37 1 1.1492 0.5391 -2.5435 38 1 2.0302 -0.7068 -3.2467 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397668510.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:54 Heat of formation + Delta-G solvation = -86.604308 kcal Electronic energy + Delta-G solvation = -17947.571636 eV Core-core repulsion = 15208.594933 eV Total energy + Delta-G solvation = -2738.976703 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.99757 -39.74418 -36.35099 -34.99586 -34.39272 -32.51446 -31.25524 -27.41950 -26.54839 -25.20382 -23.60446 -22.99393 -20.81678 -20.46614 -18.81405 -18.36786 -17.83441 -16.45265 -16.35910 -15.90655 -15.67602 -15.36171 -15.31358 -15.00763 -14.61189 -14.16440 -13.70810 -13.50869 -13.13612 -13.12323 -12.89986 -12.66885 -12.28394 -12.19612 -11.97336 -11.92578 -11.65369 -11.35778 -11.00245 -10.90484 -10.67500 -10.52657 -10.35152 -9.23072 -8.58023 -6.30413 1.51796 1.59551 1.60659 1.76842 2.44758 2.57598 3.09719 3.28668 3.65992 3.88801 4.07032 4.09534 4.14616 4.25398 4.37577 4.52420 4.58141 4.69319 4.74765 4.81769 4.87323 4.94785 4.98718 5.05697 5.07142 5.18950 5.24267 5.43543 5.59398 5.72960 5.89182 5.95587 6.23641 6.26722 6.30550 6.44254 6.71237 7.33633 7.50688 8.80761 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030427 B = 0.005992 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.026612 B = 4671.997563 C = 5131.955687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 H 0.125 0.875 4 C 0.076 3.924 5 N -0.536 5.536 6 C 0.055 3.945 7 C -0.108 4.108 8 C -0.102 4.102 9 C 0.033 3.967 10 H 0.011 0.989 11 C -0.610 4.610 12 H 0.040 0.960 13 C -0.028 4.028 14 N -0.937 5.937 15 Si 1.114 2.886 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.277 1.277 19 C 0.087 3.913 20 C 0.522 3.478 21 N -0.830 5.830 22 O -0.598 6.598 23 H 0.039 0.961 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.021 0.979 27 H 0.048 0.952 28 H 0.103 0.897 29 H 0.021 0.979 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.261 0.739 35 H 0.003 0.997 36 H 0.028 0.972 37 H 0.419 0.581 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.350 9.480 -15.276 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.119 4.119 3 H 0.143 0.857 4 C -0.053 4.053 5 N -0.261 5.261 6 C -0.072 4.072 7 C -0.145 4.145 8 C -0.140 4.140 9 C 0.013 3.987 10 H 0.029 0.971 11 C -0.648 4.648 12 H 0.059 0.941 13 C -0.227 4.227 14 N -0.574 5.574 15 Si 0.937 3.063 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.203 1.203 19 C -0.041 4.041 20 C 0.307 3.693 21 N -0.394 5.394 22 O -0.478 6.478 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.039 0.961 27 H 0.067 0.933 28 H 0.121 0.879 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.022 0.978 36 H 0.046 0.954 37 H 0.251 0.749 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.685 7.790 -14.099 16.196 hybrid contribution 1.342 0.672 -1.042 1.827 sum 3.027 8.462 -15.141 17.607 Atomic orbital electron populations 1.21643 0.90928 1.02067 1.03981 1.21234 0.99265 1.01172 0.90249 0.85731 1.21757 0.97175 0.96577 0.89766 1.62005 1.58281 1.04423 1.01371 1.22215 0.94969 0.89983 1.00022 1.21583 1.01627 0.98036 0.93265 1.21511 0.98829 0.96317 0.97378 1.18826 0.95038 0.92939 0.91851 0.97113 1.22386 1.11326 1.20611 1.10516 0.94115 1.27163 0.92586 0.98015 1.04912 1.70828 1.24229 1.43929 1.18409 0.82973 0.76028 0.74675 0.72659 1.19891 1.20869 1.20303 1.22037 0.96005 0.95964 0.90067 1.20830 0.78507 0.83429 0.86579 1.43622 1.55063 1.33959 1.06778 1.90736 1.40517 1.28804 1.87782 0.94201 0.91150 0.89040 0.96051 0.93289 0.87920 0.96102 0.91792 0.89416 0.93625 0.94262 0.92806 0.97850 0.95353 0.74865 0.76046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.98 71.98 0.65 -2.12 16 2 C -0.10 -2.33 2.65 -11.54 -0.03 -2.36 16 3 H 0.13 2.28 6.23 -2.39 -0.01 2.26 16 4 C 0.08 2.63 3.70 86.30 0.32 2.95 16 5 N -0.54 -20.15 4.11 -896.39 -3.68 -23.83 16 6 C 0.06 1.71 5.30 86.33 0.46 2.16 16 7 C -0.11 -3.44 6.09 30.65 0.19 -3.25 16 8 C -0.10 -4.31 5.26 30.67 0.16 -4.15 16 9 C 0.03 1.67 1.99 -11.49 -0.02 1.65 16 10 H 0.01 0.61 6.67 -2.39 -0.02 0.59 16 11 C -0.61 -35.13 8.32 25.60 0.21 -34.92 16 12 H 0.04 2.34 7.81 -2.91 -0.02 2.32 16 13 C -0.03 -1.64 5.45 84.65 0.46 -1.18 16 14 N -0.94 -58.33 13.63 21.45 0.29 -58.04 16 15 Si 1.11 51.85 29.91 68.60 2.05 53.90 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 C 0.09 4.20 4.72 86.33 0.41 4.61 16 20 C 0.52 12.81 7.43 87.66 0.65 13.46 16 21 N -0.83 -11.08 8.77 -173.53 -1.52 -12.60 16 22 O -0.60 -21.22 16.76 -3.03 -0.05 -21.27 16 23 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.77 7.75 -2.38 -0.02 1.75 16 25 H 0.09 1.18 7.56 -2.39 -0.02 1.16 16 26 H 0.02 0.79 7.93 -2.39 -0.02 0.77 16 27 H 0.05 1.95 7.98 -2.39 -0.02 1.93 16 28 H 0.10 2.35 6.13 -2.39 -0.01 2.33 16 29 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.26 16.50 6.66 -92.71 -0.62 15.88 16 35 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.03 1.53 8.01 -2.38 -0.02 1.51 16 37 H 0.42 2.57 8.25 -92.71 -0.76 1.80 16 38 H 0.41 4.61 8.93 -92.71 -0.83 3.79 16 Total: -1.00 -74.53 301.30 0.15 -74.37 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -0.39 Total: 10.62 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 3.45 Total: -23.15 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -4.91 Total: -94.47 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.05 Total: -21.27 kcal Atomic # 14 Polarization: 51.85 SS G_CDS: 2.05 Total: 53.90 kcal Total: -74.53 0.15 -74.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397668510.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.232 kcal (2) G-P(sol) polarization free energy of solvation -74.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds