Wall clock time and date at job start Mon Mar 30 2020 03:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34768 * 120.00301 * 2 1 4 4 O 1.21287 * 120.00132 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00339 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47061 * 33.20193 * 5 3 2 7 7 C 1.53002 * 109.47248 * 273.20312 * 5 3 2 8 8 N 1.46901 * 109.47244 * 153.20215 * 5 3 2 9 9 C 1.46853 * 110.99696 * 172.96732 * 8 5 3 10 10 C 1.53042 * 109.51938 * 185.83972 * 9 8 5 11 11 C 1.53116 * 109.27708 * 300.81927 * 10 9 8 12 12 C 1.53097 * 109.15536 * 57.65539 * 11 10 9 13 13 H 1.08993 * 109.50704 * 62.29026 * 12 11 10 14 14 C 1.50700 * 109.48722 * 182.39943 * 12 11 10 15 15 H 1.08003 * 120.00471 * 119.80891 * 14 12 11 16 16 C 1.37881 * 120.00217 * 299.80879 * 14 12 11 17 17 N 1.31522 * 119.99757 * 359.97438 * 16 14 12 18 18 Si 1.86791 * 120.00412 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47149 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47419 * 119.99882 * 18 16 14 21 21 H 1.48498 * 109.47425 * 240.00259 * 18 16 14 22 22 C 1.46844 * 110.99883 * 297.17182 * 8 5 3 23 23 H 1.09006 * 109.47078 * 300.00055 * 1 2 3 24 24 H 1.08999 * 109.47521 * 59.99592 * 1 2 3 25 25 H 1.08999 * 109.47608 * 180.02562 * 1 2 3 26 26 H 0.97004 * 119.99339 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47279 * 179.97438 * 7 5 3 28 28 H 1.08997 * 109.46993 * 299.99923 * 7 5 3 29 29 H 1.09002 * 109.47188 * 60.00118 * 7 5 3 30 30 H 1.08998 * 109.46225 * 305.85322 * 9 8 5 31 31 H 1.08994 * 109.46651 * 65.82426 * 9 8 5 32 32 H 1.09001 * 109.50200 * 60.75872 * 10 9 8 33 33 H 1.09005 * 109.50140 * 180.83836 * 10 9 8 34 34 H 1.09002 * 109.52293 * 177.56070 * 11 10 9 35 35 H 1.09002 * 109.52468 * 297.74862 * 11 10 9 36 36 H 0.96996 * 119.99945 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46287 * 294.17787 * 22 8 5 38 38 H 1.08999 * 109.45916 * 54.16146 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1671 -0.0006 6 1 4.0090 0.3074 -0.5636 7 6 4.1564 1.0862 1.4395 8 7 4.1353 2.4035 -0.6249 9 6 5.5936 2.5171 -0.4948 10 6 6.0497 3.8787 -1.0242 11 6 5.6375 4.0140 -2.4926 12 6 4.1203 3.8436 -2.6062 13 1 3.6222 4.6357 -2.0473 14 6 3.7133 3.9167 -4.0553 15 1 3.2184 3.0770 -4.5204 16 6 3.9727 5.0558 -4.7877 17 7 4.5750 6.0787 -4.2213 18 14 3.4676 5.1468 -6.5837 19 1 2.8115 3.8744 -6.9785 20 1 2.5192 6.2735 -6.7748 21 1 4.6711 5.3646 -7.4260 22 6 3.7199 2.4831 -2.0311 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.9499 -0.8401 -0.0004 27 1 5.2465 1.0857 1.4390 28 1 3.7933 1.9459 2.0025 29 1 3.7933 0.1687 1.9027 30 1 5.8730 2.4233 0.5546 31 1 6.0725 1.7248 -1.0701 32 1 5.5819 4.6714 -0.4403 33 1 7.1338 3.9568 -0.9412 34 1 5.9220 4.9995 -2.8615 35 1 6.1357 3.2452 -3.0832 36 1 4.7571 6.8802 -4.7363 37 1 4.2076 1.6909 -2.5993 38 1 2.6384 2.3648 -2.0976 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397692059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:39 Heat of formation + Delta-G solvation = -37.411969 kcal Electronic energy + Delta-G solvation = -18179.612793 eV Core-core repulsion = 15442.769230 eV Total energy + Delta-G solvation = -2736.843563 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82177 -37.74063 -34.37155 -34.20290 -32.14169 -30.15979 -29.21541 -26.99722 -24.95941 -23.90042 -22.16058 -20.93493 -19.86678 -18.60125 -17.06014 -16.50793 -15.81714 -15.24983 -14.73181 -14.52666 -14.03682 -13.83706 -13.32948 -12.75171 -12.70270 -12.54188 -12.40415 -12.27847 -11.90717 -11.78516 -11.42407 -11.30043 -10.90657 -10.62452 -10.57073 -10.03135 -9.77192 -9.43388 -9.37530 -9.04061 -8.92392 -8.60486 -8.23085 -7.62144 -5.90298 -3.95718 2.92901 3.29365 3.34333 3.41951 3.45858 4.38768 4.56665 4.87787 5.18098 5.25291 5.28462 5.39725 5.53141 5.56408 5.71988 5.80925 5.82142 5.88823 6.10637 6.16499 6.33283 6.42476 6.49632 6.59668 6.75684 6.80633 7.05035 7.28429 7.40675 7.57482 7.69656 7.81998 7.86349 8.19540 8.25827 8.52027 8.56110 9.08273 9.67745 11.16045 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024847 B = 0.007336 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.644125 B = 3816.057860 C = 4680.746506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.745 5.745 3 C 0.516 3.484 4 O -0.506 6.506 5 C 0.066 3.934 6 H 0.050 0.950 7 C -0.141 4.141 8 N -0.516 5.516 9 C 0.061 3.939 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.057 3.943 13 H 0.037 0.963 14 C -0.511 4.511 15 H 0.052 0.948 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.068 3.932 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.397 0.603 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.029 0.971 36 H 0.258 0.742 37 H 0.015 0.985 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 -13.209 9.674 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.399 5.399 3 C 0.301 3.699 4 O -0.378 6.378 5 C -0.047 4.047 6 H 0.068 0.932 7 C -0.199 4.199 8 N -0.242 5.242 9 C -0.067 4.067 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.038 3.962 13 H 0.055 0.945 14 C -0.550 4.550 15 H 0.070 0.930 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.058 4.058 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.230 0.770 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.508 -11.830 9.877 15.485 hybrid contribution 0.271 -1.119 -1.506 1.896 sum -1.237 -12.949 8.371 15.469 Atomic orbital electron populations 1.21468 0.79987 1.01646 1.02334 1.45867 1.07505 1.08727 1.77790 1.20635 0.89975 0.83501 0.75836 1.90741 1.69813 1.30990 1.46260 1.21516 0.91605 0.94060 0.97499 0.93223 1.21834 1.01813 1.02275 0.93960 1.61838 1.11697 1.32017 1.18643 1.22154 0.86859 0.98222 0.99463 1.21676 0.98297 0.95629 0.99874 1.21659 0.98891 1.03018 0.91320 1.18631 0.92204 0.90662 0.94726 0.94515 1.21180 1.37929 1.00378 0.95528 0.92960 1.24929 0.95208 0.95658 0.98085 1.69909 1.42129 1.04745 1.35969 0.86580 0.78219 0.77957 0.85484 1.19932 1.21028 1.21117 1.22354 0.99265 1.00351 0.83857 0.92497 0.92244 0.91091 0.76986 0.91134 0.91048 0.92377 0.91659 0.95889 0.91926 0.93401 0.89079 0.95223 0.93170 0.96684 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 10.70 59.85 0.64 1.60 16 2 N -0.74 -8.97 5.71 -67.08 -0.38 -9.35 16 3 C 0.52 8.59 5.96 -10.99 -0.07 8.52 16 4 O -0.51 -10.95 15.76 5.55 0.09 -10.86 16 5 C 0.07 1.02 2.47 -68.87 -0.17 0.85 16 6 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 7 C -0.14 -1.72 8.72 37.16 0.32 -1.40 16 8 N -0.52 -10.16 4.22 -228.08 -0.96 -11.12 16 9 C 0.06 1.07 5.06 -3.83 -0.02 1.05 16 10 C -0.12 -2.34 6.09 -26.65 -0.16 -2.51 16 11 C -0.11 -2.71 5.02 -26.62 -0.13 -2.84 16 12 C 0.06 1.50 2.26 -91.70 -0.21 1.30 16 13 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 14 C -0.51 -14.70 8.56 -34.44 -0.29 -14.99 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.78 5.30 -17.81 -0.09 1.69 16 17 N -0.89 -26.20 11.36 55.43 0.63 -25.57 16 18 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.07 1.57 4.41 -3.84 -0.02 1.55 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.40 3.40 8.83 -40.82 -0.36 3.04 16 27 H 0.07 0.78 6.20 -51.93 -0.32 0.46 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.98 5.85 -51.93 -0.30 0.67 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 2.48 6.16 -51.93 -0.32 2.16 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 1.52 6.46 -51.93 -0.34 1.18 16 LS Contribution 299.74 15.07 4.52 4.52 Total: -1.00 -33.25 299.74 -7.59 -40.84 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.26 Total: -0.19 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -0.20 Total: -5.19 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.72 Total: -46.04 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.25 -7.59 -40.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397692059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.428 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds