Wall clock time and date at job start Mon Mar 30 2020 03:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34768 * 120.00301 * 2 1 4 4 O 1.21287 * 120.00132 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00339 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47061 * 33.20193 * 5 3 2 7 7 C 1.53002 * 109.47248 * 273.20312 * 5 3 2 8 8 N 1.46901 * 109.47244 * 153.20215 * 5 3 2 9 9 C 1.46853 * 110.99696 * 172.96732 * 8 5 3 10 10 C 1.53042 * 109.51938 * 185.83972 * 9 8 5 11 11 C 1.53116 * 109.27708 * 300.81927 * 10 9 8 12 12 C 1.53097 * 109.15536 * 57.65539 * 11 10 9 13 13 H 1.08993 * 109.50704 * 62.29026 * 12 11 10 14 14 C 1.50700 * 109.48722 * 182.39943 * 12 11 10 15 15 H 1.08003 * 120.00471 * 119.80891 * 14 12 11 16 16 C 1.37881 * 120.00217 * 299.80879 * 14 12 11 17 17 N 1.31522 * 119.99757 * 359.97438 * 16 14 12 18 18 Si 1.86791 * 120.00412 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47149 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47419 * 119.99882 * 18 16 14 21 21 H 1.48498 * 109.47425 * 240.00259 * 18 16 14 22 22 C 1.46844 * 110.99883 * 297.17182 * 8 5 3 23 23 H 1.09006 * 109.47078 * 300.00055 * 1 2 3 24 24 H 1.08999 * 109.47521 * 59.99592 * 1 2 3 25 25 H 1.08999 * 109.47608 * 180.02562 * 1 2 3 26 26 H 0.97004 * 119.99339 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47279 * 179.97438 * 7 5 3 28 28 H 1.08997 * 109.46993 * 299.99923 * 7 5 3 29 29 H 1.09002 * 109.47188 * 60.00118 * 7 5 3 30 30 H 1.08998 * 109.46225 * 305.85322 * 9 8 5 31 31 H 1.08994 * 109.46651 * 65.82426 * 9 8 5 32 32 H 1.09001 * 109.50200 * 60.75872 * 10 9 8 33 33 H 1.09005 * 109.50140 * 180.83836 * 10 9 8 34 34 H 1.09002 * 109.52293 * 177.56070 * 11 10 9 35 35 H 1.09002 * 109.52468 * 297.74862 * 11 10 9 36 36 H 0.96996 * 119.99945 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46287 * 294.17787 * 22 8 5 38 38 H 1.08999 * 109.45916 * 54.16146 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1671 -0.0006 6 1 4.0090 0.3074 -0.5636 7 6 4.1564 1.0862 1.4395 8 7 4.1353 2.4035 -0.6249 9 6 5.5936 2.5171 -0.4948 10 6 6.0497 3.8787 -1.0242 11 6 5.6375 4.0140 -2.4926 12 6 4.1203 3.8436 -2.6062 13 1 3.6222 4.6357 -2.0473 14 6 3.7133 3.9167 -4.0553 15 1 3.2184 3.0770 -4.5204 16 6 3.9727 5.0558 -4.7877 17 7 4.5750 6.0787 -4.2213 18 14 3.4676 5.1468 -6.5837 19 1 2.8115 3.8744 -6.9785 20 1 2.5192 6.2735 -6.7748 21 1 4.6711 5.3646 -7.4260 22 6 3.7199 2.4831 -2.0311 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.9499 -0.8401 -0.0004 27 1 5.2465 1.0857 1.4390 28 1 3.7933 1.9459 2.0025 29 1 3.7933 0.1687 1.9027 30 1 5.8730 2.4233 0.5546 31 1 6.0725 1.7248 -1.0701 32 1 5.5819 4.6714 -0.4403 33 1 7.1338 3.9568 -0.9412 34 1 5.9220 4.9995 -2.8615 35 1 6.1357 3.2452 -3.0832 36 1 4.7571 6.8802 -4.7363 37 1 4.2076 1.6909 -2.5993 38 1 2.6384 2.3648 -2.0976 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397692059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:38 Heat of formation + Delta-G solvation = -62.823477 kcal Electronic energy + Delta-G solvation = -18180.714719 eV Core-core repulsion = 15442.769230 eV Total energy + Delta-G solvation = -2737.945489 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.16115 -39.30066 -35.96468 -35.55462 -33.98566 -31.87348 -30.80293 -28.06315 -26.86522 -25.37771 -23.77594 -22.56241 -21.13579 -20.39355 -18.61170 -18.09707 -17.41776 -16.69151 -16.31345 -16.03064 -15.50590 -15.14772 -14.93803 -14.54140 -14.22871 -14.12899 -13.82215 -13.39890 -13.16078 -13.09715 -12.91186 -12.85149 -12.62273 -12.49727 -12.40533 -11.76716 -11.70891 -11.38137 -10.89022 -10.85213 -10.56084 -10.38435 -10.09920 -9.10801 -8.09984 -6.24848 1.37523 1.38708 1.50700 1.66711 2.22890 2.40899 3.07380 3.16308 3.82838 4.08465 4.13622 4.18279 4.31503 4.42885 4.46723 4.58702 4.61767 4.67252 4.78825 4.85671 4.93091 4.94833 4.97763 5.08178 5.18893 5.28574 5.40308 5.47625 5.50593 5.61173 5.93383 6.12498 6.18611 6.26996 6.43465 6.65373 6.87610 7.35998 7.42748 8.95289 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024847 B = 0.007336 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.644125 B = 3816.057860 C = 4680.746506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.725 5.725 3 C 0.508 3.492 4 O -0.570 6.570 5 C 0.062 3.938 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.540 5.540 9 C 0.064 3.936 10 C -0.112 4.112 11 C -0.102 4.102 12 C 0.054 3.946 13 H -0.016 1.016 14 C -0.538 4.538 15 H 0.047 0.953 16 C 0.012 3.988 17 N -0.916 5.916 18 Si 0.957 3.043 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.274 1.274 22 C 0.089 3.911 23 H 0.050 0.950 24 H 0.036 0.964 25 H 0.117 0.883 26 H 0.418 0.582 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.029 0.971 36 H 0.261 0.739 37 H 0.020 0.980 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 -15.927 10.254 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.379 5.379 3 C 0.294 3.706 4 O -0.447 6.447 5 C -0.049 4.049 6 H 0.096 0.904 7 C -0.191 4.191 8 N -0.266 5.266 9 C -0.063 4.063 10 C -0.150 4.150 11 C -0.141 4.141 12 C 0.035 3.965 13 H 0.002 0.998 14 C -0.577 4.577 15 H 0.066 0.934 16 C -0.186 4.186 17 N -0.555 5.555 18 Si 0.782 3.218 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.199 1.199 22 C -0.038 4.038 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.135 0.865 26 H 0.255 0.745 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.644 -14.622 10.474 17.998 hybrid contribution -0.044 -0.299 -1.650 1.677 sum -0.689 -14.921 8.824 17.349 Atomic orbital electron populations 1.21626 0.79018 1.04209 1.00939 1.45733 1.08240 1.08394 1.75523 1.21035 0.90784 0.83733 0.75042 1.90719 1.71003 1.33430 1.49570 1.21716 0.90793 0.92868 0.99557 0.90449 1.21843 1.02876 1.03175 0.91242 1.61663 1.13205 1.35417 1.16274 1.22196 0.85591 0.96670 1.01803 1.21609 1.00089 0.97043 0.96262 1.21443 0.97180 1.00905 0.94547 1.18541 0.93336 0.91261 0.93338 0.99759 1.21534 1.38483 1.00695 0.96968 0.93438 1.25766 0.95040 0.95186 1.02627 1.70058 1.42635 1.05175 1.37649 0.85523 0.78158 0.78071 0.80008 1.19242 1.20691 1.19928 1.21875 0.97662 0.97989 0.86313 0.93139 0.94521 0.86450 0.74504 0.89246 0.93030 0.88941 0.87902 0.94370 0.93795 0.90331 0.92497 0.95242 0.92981 0.96193 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.70 10.70 127.77 1.37 3.06 16 2 N -0.73 -15.89 5.71 -484.53 -2.77 -18.66 16 3 C 0.51 16.52 5.96 87.66 0.52 17.05 16 4 O -0.57 -25.49 15.76 -3.05 -0.05 -25.54 16 5 C 0.06 1.78 2.47 44.17 0.11 1.89 16 6 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 7 C -0.13 -2.77 8.72 71.98 0.63 -2.14 16 8 N -0.54 -20.84 4.22 -875.52 -3.69 -24.54 16 9 C 0.06 2.11 5.06 86.33 0.44 2.55 16 10 C -0.11 -4.43 6.09 30.65 0.19 -4.24 16 11 C -0.10 -5.14 5.02 30.67 0.15 -4.98 16 12 C 0.05 3.01 2.26 -11.50 -0.03 2.98 16 13 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 14 C -0.54 -32.09 8.56 25.60 0.22 -31.87 16 15 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 16 C 0.01 0.73 5.30 84.65 0.45 1.18 16 17 N -0.92 -55.90 11.36 21.45 0.24 -55.66 16 18 Si 0.96 45.78 29.54 68.60 2.03 47.80 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 22 C 0.09 4.18 4.41 86.33 0.38 4.57 16 23 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.42 5.60 8.83 -92.71 -0.82 4.78 16 27 H 0.09 1.52 6.20 -2.38 -0.01 1.51 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 2.65 5.85 -2.39 -0.01 2.64 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.06 3.22 6.16 -2.39 -0.01 3.20 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.04 1.88 6.46 -2.39 -0.02 1.87 16 Total: -1.00 -77.73 299.74 0.41 -77.32 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.22 Total: 9.23 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 4.43 Total: -9.96 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -6.22 Total: -98.86 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.05 Total: -25.54 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -77.73 0.41 -77.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397692059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.500 kcal (2) G-P(sol) polarization free energy of solvation -77.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds