Wall clock time and date at job start Mon Mar 30 2020 03:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34775 * 119.99483 * 2 1 4 4 O 1.21281 * 120.00492 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99676 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46911 * 60.00161 * 5 3 2 7 7 C 1.53001 * 109.47064 * 300.00391 * 5 3 2 8 8 N 1.46899 * 109.46825 * 179.97438 * 5 3 2 9 9 C 1.46844 * 110.99948 * 66.04944 * 8 5 3 10 10 C 1.53043 * 109.52302 * 174.15730 * 9 8 5 11 11 C 1.53113 * 109.27522 * 59.17752 * 10 9 8 12 12 C 1.53115 * 109.16666 * 302.34611 * 11 10 9 13 13 H 1.09008 * 109.49932 * 297.67656 * 12 11 10 14 14 C 1.50700 * 109.50792 * 177.59660 * 12 11 10 15 15 H 1.07999 * 119.99919 * 245.43489 * 14 12 11 16 16 C 1.37878 * 119.99914 * 65.43554 * 14 12 11 17 17 N 1.31521 * 120.00063 * 9.56577 * 16 14 12 18 18 Si 1.86797 * 120.00102 * 189.56758 * 16 14 12 19 19 H 1.48500 * 109.47278 * 94.99010 * 18 16 14 20 20 H 1.48497 * 109.46982 * 214.99007 * 18 16 14 21 21 H 1.48501 * 109.46867 * 334.99052 * 18 16 14 22 22 C 1.46842 * 111.00043 * 301.83701 * 8 5 3 23 23 H 1.08992 * 109.47391 * 299.99985 * 1 2 3 24 24 H 1.09006 * 109.47079 * 60.00458 * 1 2 3 25 25 H 1.09002 * 109.46698 * 179.97438 * 1 2 3 26 26 H 0.96995 * 119.99603 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46545 * 299.99642 * 7 5 3 28 28 H 1.08992 * 109.47240 * 59.99640 * 7 5 3 29 29 H 1.08994 * 109.46575 * 180.02562 * 7 5 3 30 30 H 1.09001 * 109.46239 * 294.17332 * 9 8 5 31 31 H 1.08998 * 109.46276 * 54.14515 * 9 8 5 32 32 H 1.09004 * 109.50160 * 179.12117 * 10 9 8 33 33 H 1.09002 * 109.50077 * 299.19680 * 10 9 8 34 34 H 1.08998 * 109.52319 * 62.25675 * 11 10 9 35 35 H 1.09006 * 109.51817 * 182.44068 * 11 10 9 36 36 H 0.96997 * 120.00250 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46602 * 305.85274 * 22 8 5 38 38 H 1.08997 * 109.46794 * 65.82920 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0096 0.6533 -0.8892 7 6 4.1554 0.4463 1.2501 8 7 4.1354 2.5523 -0.0002 9 6 3.7856 3.2348 1.2521 10 6 4.4337 4.6210 1.2775 11 6 3.9391 5.4322 0.0768 12 6 4.2729 4.6765 -1.2124 13 1 5.3542 4.5741 -1.3045 14 6 3.7371 5.4398 -2.3962 15 1 2.9493 5.0152 -3.0008 16 6 4.2527 6.6800 -2.7074 17 7 5.3316 7.1163 -2.0948 18 14 3.4188 7.7408 -3.9992 19 1 2.4863 8.6873 -3.3360 20 1 4.4466 8.5041 -4.7517 21 1 2.6605 6.8743 -4.9370 22 6 3.6295 3.2887 -1.1655 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9500 -0.8400 -0.0004 27 1 3.7917 0.9603 2.1399 28 1 3.7921 -0.5813 1.2502 29 1 5.2454 0.4467 1.2507 30 1 2.7027 3.3389 1.3187 31 1 4.1468 2.6496 2.0978 32 1 4.1611 5.1333 2.2002 33 1 5.5175 4.5169 1.2256 34 1 2.8603 5.5696 0.1496 35 1 4.4312 6.4048 0.0668 36 1 5.6941 7.9890 -2.3135 37 1 3.8772 2.7427 -2.0758 38 1 2.5473 3.3927 -1.0876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397692061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:41 Heat of formation + Delta-G solvation = -59.680773 kcal Electronic energy + Delta-G solvation = -18372.546884 eV Core-core repulsion = 15634.737674 eV Total energy + Delta-G solvation = -2737.809211 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.52649 -38.96912 -35.86782 -35.66015 -34.01809 -31.81514 -30.76981 -27.84056 -26.85596 -25.40742 -23.64694 -22.85302 -21.07000 -20.53459 -18.54289 -18.02893 -17.29387 -16.61548 -16.41050 -16.03355 -15.72885 -15.20678 -14.91231 -14.50373 -14.25280 -13.96814 -13.69143 -13.37826 -13.13071 -13.07660 -12.92920 -12.82959 -12.74188 -12.43964 -12.05328 -11.75222 -11.63211 -11.36880 -11.24797 -10.79032 -10.66743 -10.41776 -10.05378 -8.94245 -8.13280 -6.21433 1.37007 1.38807 1.49248 1.62905 2.34552 2.41469 3.05726 3.16127 3.87978 4.05017 4.16691 4.23007 4.36401 4.45369 4.51751 4.60269 4.70348 4.75583 4.85967 4.91406 4.92276 5.02420 5.06370 5.14733 5.20380 5.32261 5.42179 5.45135 5.53734 5.63158 5.94598 6.03829 6.14949 6.24724 6.47463 6.62024 6.90264 7.33012 7.44224 8.95768 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030100 B = 0.006979 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.999653 B = 4011.088119 C = 4554.965144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.721 5.721 3 C 0.475 3.525 4 O -0.574 6.574 5 C 0.057 3.943 6 H 0.119 0.881 7 C -0.134 4.134 8 N -0.516 5.516 9 C 0.055 3.945 10 C -0.109 4.109 11 C -0.095 4.095 12 C 0.055 3.945 13 H 0.002 0.998 14 C -0.537 4.537 15 H 0.043 0.957 16 C 0.017 3.983 17 N -0.915 5.915 18 Si 0.950 3.050 19 H -0.277 1.277 20 H -0.277 1.277 21 H -0.270 1.270 22 C 0.066 3.934 23 H 0.045 0.955 24 H 0.038 0.962 25 H 0.115 0.885 26 H 0.419 0.581 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.030 0.970 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.017 0.983 35 H 0.039 0.961 36 H 0.261 0.739 37 H 0.044 0.956 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.944 -17.729 7.475 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.374 5.374 3 C 0.261 3.739 4 O -0.454 6.454 5 C -0.056 4.056 6 H 0.136 0.864 7 C -0.191 4.191 8 N -0.238 5.238 9 C -0.072 4.072 10 C -0.147 4.147 11 C -0.134 4.134 12 C 0.036 3.964 13 H 0.021 0.979 14 C -0.576 4.576 15 H 0.061 0.939 16 C -0.182 4.182 17 N -0.554 5.554 18 Si 0.776 3.224 19 H -0.203 1.203 20 H -0.203 1.203 21 H -0.194 1.194 22 C -0.061 4.061 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.133 0.867 26 H 0.256 0.744 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.746 -16.859 7.450 19.032 hybrid contribution -1.107 0.822 -0.919 1.657 sum -5.852 -16.036 6.531 18.277 Atomic orbital electron populations 1.21606 0.79557 1.04034 1.00773 1.45912 1.08033 1.08704 1.74797 1.22642 0.92431 0.83826 0.74960 1.90676 1.71404 1.32790 1.50528 1.22183 0.87678 0.92053 1.03654 0.86367 1.21869 1.03168 1.00212 0.93856 1.62417 1.57171 1.01191 1.03070 1.22190 0.98114 0.94826 0.92112 1.21565 1.00105 0.95374 0.97645 1.21371 0.97052 0.99142 0.95818 1.18548 0.94609 0.90528 0.92679 0.97949 1.21469 1.19693 1.03345 1.13095 0.93882 1.25696 0.94968 0.99059 0.98481 1.70098 1.21235 1.19644 1.44445 0.85668 0.78536 0.78944 0.79284 1.20286 1.20280 1.19442 1.22194 0.98112 0.94972 0.90811 0.93606 0.94347 0.86688 0.74425 0.92486 0.88492 0.89931 0.95142 0.88713 0.91411 0.92504 0.96434 0.94251 0.92954 0.93750 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.51 10.70 127.77 1.37 2.88 16 2 N -0.72 -13.99 5.61 -484.50 -2.72 -16.71 16 3 C 0.48 14.13 6.57 87.66 0.58 14.71 16 4 O -0.57 -23.58 11.62 -3.03 -0.04 -23.61 16 5 C 0.06 1.55 2.88 44.17 0.13 1.68 16 6 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 7 C -0.13 -2.42 8.67 71.98 0.62 -1.80 16 8 N -0.52 -19.59 4.70 -875.50 -4.11 -23.70 16 9 C 0.06 2.05 4.72 86.33 0.41 2.45 16 10 C -0.11 -4.56 6.09 30.65 0.19 -4.37 16 11 C -0.10 -5.02 5.09 30.67 0.16 -4.86 16 12 C 0.06 3.07 2.13 -11.49 -0.02 3.05 16 13 H 0.00 0.14 8.09 -2.38 -0.02 0.12 16 14 C -0.54 -32.48 8.48 25.60 0.22 -32.26 16 15 H 0.04 2.61 7.77 -2.91 -0.02 2.58 16 16 C 0.02 1.01 5.22 84.65 0.44 1.45 16 17 N -0.92 -56.21 12.18 21.45 0.26 -55.95 16 18 Si 0.95 46.42 29.55 68.60 2.03 48.45 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 22 C 0.07 3.17 4.20 86.33 0.36 3.53 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 25 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.42 4.60 8.25 -92.71 -0.76 3.83 16 27 H 0.06 1.12 6.20 -2.39 -0.01 1.11 16 28 H 0.10 1.01 7.56 -2.39 -0.02 0.99 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.03 1.27 6.00 -2.39 -0.01 1.26 16 31 H 0.09 2.83 5.87 -2.39 -0.01 2.81 16 32 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 33 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.04 2.26 6.98 -2.38 -0.02 2.24 16 36 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.04 2.09 8.12 -2.39 -0.02 2.07 16 38 H 0.04 2.16 5.36 -2.39 -0.01 2.15 16 Total: -1.00 -75.92 293.38 0.15 -75.77 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.28 Total: 9.31 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 4.44 Total: -13.56 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -6.57 Total: -96.36 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.04 Total: -23.61 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -75.92 0.15 -75.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397692061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.092 kcal (2) G-P(sol) polarization free energy of solvation -75.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds