Wall clock time and date at job start Mon Mar 30 2020 03:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46359 * 2 1 4 4 C 1.50696 * 109.47074 * 240.00550 * 2 1 3 5 5 H 1.08001 * 119.99525 * 239.99449 * 4 2 1 6 6 C 1.37879 * 120.00441 * 59.99990 * 4 2 1 7 7 N 1.31517 * 119.99628 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00230 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46977 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47120 * 119.99821 * 8 6 4 11 11 H 1.48500 * 109.47119 * 240.00153 * 8 6 4 12 12 N 1.46497 * 109.46897 * 120.00191 * 2 1 3 13 13 C 1.46500 * 120.00277 * 60.00497 * 12 2 1 14 14 C 1.34780 * 119.99501 * 240.00283 * 12 2 1 15 15 O 1.21275 * 120.00485 * 359.97438 * 14 12 2 16 16 C 1.50701 * 119.99554 * 180.02562 * 14 12 2 17 17 H 1.08998 * 109.47417 * 39.99712 * 16 14 12 18 18 N 1.46901 * 109.47078 * 159.99942 * 16 14 12 19 19 C 1.53002 * 109.47141 * 279.99817 * 16 14 12 20 20 C 1.53780 * 113.61353 * 272.47732 * 19 16 14 21 21 C 1.53957 * 87.01796 * 220.04638 * 20 19 16 22 22 C 1.53778 * 113.61638 * 174.86729 * 19 16 14 23 23 H 1.08994 * 109.47807 * 299.99517 * 1 2 3 24 24 H 1.09001 * 109.47483 * 59.99914 * 1 2 3 25 25 H 1.09001 * 109.46981 * 179.97438 * 1 2 3 26 26 H 0.97003 * 119.99712 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46835 * 270.00131 * 13 12 2 28 28 H 1.09002 * 109.46535 * 29.99529 * 13 12 2 29 29 H 1.09000 * 109.47006 * 149.99309 * 13 12 2 30 30 H 1.00901 * 111.00303 * 53.37794 * 18 16 14 31 31 H 1.00900 * 110.99901 * 177.33629 * 18 16 14 32 32 H 1.08998 * 112.84495 * 43.66409 * 19 16 14 33 33 H 1.09005 * 113.61183 * 334.56350 * 20 19 16 34 34 H 1.08998 * 113.61987 * 105.47026 * 20 19 16 35 35 H 1.09000 * 113.53476 * 270.80849 * 21 20 19 36 36 H 1.09006 * 113.74343 * 139.94362 * 21 20 19 37 37 H 1.09004 * 113.61543 * 254.52739 * 22 19 16 38 38 H 1.09000 * 113.61443 * 25.42945 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8299 -2.6034 8 14 2.3225 -1.1192 -4.0080 9 1 3.1484 -2.2853 -3.6039 10 1 1.1679 -1.5863 -4.8166 11 1 3.1473 -0.1854 -4.8160 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7931 -0.0356 2.0833 15 8 3.0864 1.1254 1.8913 16 6 3.2958 -0.7462 3.3135 17 1 3.5854 -1.7640 3.0523 18 7 4.4592 -0.0290 3.8522 19 6 2.1881 -0.7859 4.3681 20 6 2.1586 0.4539 5.2775 21 6 1.8564 -0.5069 6.4420 22 6 2.5572 -1.6006 5.6190 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7087 1.1615 -3.4844 27 1 0.7376 -2.1445 1.9992 28 1 1.5296 -2.5968 0.4706 29 1 2.4630 -2.5819 1.9862 30 1 4.2459 0.9459 4.0012 31 1 4.7885 -0.4612 4.7024 32 1 1.2150 -1.0440 3.9502 33 1 3.1227 0.9550 5.3639 34 1 1.3421 1.1404 5.0536 35 1 0.7920 -0.6877 6.5920 36 1 2.3771 -0.2543 7.3657 37 1 2.0620 -2.5704 5.6703 38 1 3.6305 -1.6623 5.7989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399105141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:03 Heat of formation + Delta-G solvation = -12.331606 kcal Electronic energy + Delta-G solvation = -18190.676749 eV Core-core repulsion = 15454.920752 eV Total energy + Delta-G solvation = -2735.755997 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.07542 -38.15255 -35.32140 -33.32410 -32.70183 -29.59389 -27.11037 -26.07380 -25.70494 -25.18661 -23.59458 -20.77668 -19.16151 -18.20190 -16.96444 -16.34524 -15.87703 -15.71011 -15.17456 -14.50825 -14.18385 -13.94131 -13.23949 -12.83619 -12.75399 -12.46824 -12.34975 -12.09401 -11.74296 -11.55300 -11.32506 -11.02962 -10.83003 -10.72023 -10.66742 -10.49487 -10.30755 -10.20051 -10.14781 -9.14191 -8.87592 -8.48016 -8.36470 -7.53320 -6.04718 -4.12276 3.27926 3.35644 3.38399 3.44875 3.91726 4.41449 4.52352 4.53843 4.67550 4.76730 4.86904 5.25485 5.29467 5.32925 5.52420 5.57317 5.62494 5.69138 5.76635 5.86376 5.95578 6.04682 6.16096 6.34914 6.42140 6.76772 6.84614 7.08149 7.21371 7.46988 7.57933 7.61602 7.75168 8.05297 8.23615 8.58583 8.87499 9.13289 9.54283 11.00700 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041730 B = 0.006010 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.811174 B = 4658.095658 C = 4709.719783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.062 0.938 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.592 5.592 13 C 0.083 3.917 14 C 0.513 3.487 15 O -0.547 6.547 16 C 0.081 3.919 17 H 0.100 0.900 18 N -0.826 5.826 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.140 4.140 22 C -0.136 4.136 23 H 0.009 0.991 24 H 0.093 0.907 25 H 0.029 0.971 26 H 0.262 0.738 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.351 0.649 31 H 0.337 0.663 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -6.028 15.041 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.323 5.323 13 C -0.061 4.061 14 C 0.299 3.701 15 O -0.424 6.424 16 C -0.034 4.034 17 H 0.118 0.882 18 N -0.359 5.359 19 C -0.159 4.159 20 C -0.180 4.180 21 C -0.177 4.177 22 C -0.173 4.173 23 H 0.028 0.972 24 H 0.111 0.889 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.168 0.832 31 H 0.151 0.849 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.041 -5.478 14.075 15.139 hybrid contribution -0.422 -0.451 -0.108 0.627 sum 0.620 -5.929 13.967 15.186 Atomic orbital electron populations 1.22076 0.98286 0.99316 1.00688 1.18917 0.90756 0.94549 0.80023 0.91987 1.21365 1.31582 1.12962 0.90310 0.92197 1.24900 0.94969 0.94999 0.98985 1.69896 1.36505 1.22685 1.23597 0.86435 0.78565 0.79606 0.82759 1.19801 1.20976 1.20913 1.48178 1.49150 1.11504 1.23502 1.21639 0.98609 0.83560 1.02321 1.20146 0.78913 0.87111 0.83973 1.90617 1.57908 1.17231 1.76694 1.21355 0.90049 0.98850 0.93184 0.88225 1.58699 1.33992 1.07616 1.35597 1.23290 1.00465 0.97607 0.94542 1.23060 1.02477 0.96554 0.95877 1.22805 1.00782 0.96974 0.97144 1.22958 1.00645 0.97951 0.95772 0.97162 0.88887 0.95212 0.92784 0.94047 0.90139 0.92746 0.83200 0.84884 0.88464 0.89926 0.91218 0.90252 0.91581 0.91220 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.71 2.64 -69.09 -0.18 6.53 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.38 7.99 -34.44 -0.28 -14.65 16 5 H 0.06 1.63 7.33 -52.49 -0.38 1.24 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.59 -12.80 2.75 -175.27 -0.48 -13.28 16 13 C 0.08 1.40 8.70 59.85 0.52 1.92 16 14 C 0.51 10.83 6.91 -10.98 -0.08 10.75 16 15 O -0.55 -13.79 15.42 5.56 0.09 -13.71 16 16 C 0.08 1.24 2.54 -68.86 -0.17 1.06 16 17 H 0.10 1.43 6.31 -51.93 -0.33 1.11 16 18 N -0.83 -11.88 8.43 -5.65 -0.05 -11.93 16 19 C -0.14 -1.73 3.38 -89.81 -0.30 -2.03 16 20 C -0.14 -1.67 7.33 -25.83 -0.19 -1.86 16 21 C -0.14 -1.31 8.09 -25.83 -0.21 -1.51 16 22 C -0.14 -1.29 7.49 -25.92 -0.19 -1.48 16 23 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 24 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 25 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 27 H 0.04 0.62 7.81 -51.93 -0.41 0.21 16 28 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 29 H 0.05 0.77 5.94 -51.93 -0.31 0.46 16 30 H 0.35 5.32 6.52 -39.29 -0.26 5.06 16 31 H 0.34 3.72 7.52 -39.29 -0.30 3.42 16 32 H 0.10 1.30 7.37 -51.93 -0.38 0.92 16 33 H 0.08 0.94 5.87 -51.93 -0.30 0.64 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.69 6.83 -51.93 -0.35 0.34 16 LS Contribution 296.31 15.07 4.47 4.47 Total: -1.00 -31.35 296.31 -6.92 -38.28 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.71 Total: 7.54 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.84 Total: -2.80 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.10 Total: -50.06 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.35 -6.92 -38.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399105141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.944 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds