Wall clock time and date at job start Mon Mar 30 2020 03:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46359 * 2 1 4 4 C 1.50696 * 109.47074 * 240.00550 * 2 1 3 5 5 H 1.08001 * 119.99525 * 239.99449 * 4 2 1 6 6 C 1.37879 * 120.00441 * 59.99990 * 4 2 1 7 7 N 1.31517 * 119.99628 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00230 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46977 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47120 * 119.99821 * 8 6 4 11 11 H 1.48500 * 109.47119 * 240.00153 * 8 6 4 12 12 N 1.46497 * 109.46897 * 120.00191 * 2 1 3 13 13 C 1.46500 * 120.00277 * 60.00497 * 12 2 1 14 14 C 1.34780 * 119.99501 * 240.00283 * 12 2 1 15 15 O 1.21275 * 120.00485 * 359.97438 * 14 12 2 16 16 C 1.50701 * 119.99554 * 180.02562 * 14 12 2 17 17 H 1.08998 * 109.47417 * 39.99712 * 16 14 12 18 18 N 1.46901 * 109.47078 * 159.99942 * 16 14 12 19 19 C 1.53002 * 109.47141 * 279.99817 * 16 14 12 20 20 C 1.53780 * 113.61353 * 272.47732 * 19 16 14 21 21 C 1.53957 * 87.01796 * 220.04638 * 20 19 16 22 22 C 1.53778 * 113.61638 * 174.86729 * 19 16 14 23 23 H 1.08994 * 109.47807 * 299.99517 * 1 2 3 24 24 H 1.09001 * 109.47483 * 59.99914 * 1 2 3 25 25 H 1.09001 * 109.46981 * 179.97438 * 1 2 3 26 26 H 0.97003 * 119.99712 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46835 * 270.00131 * 13 12 2 28 28 H 1.09002 * 109.46535 * 29.99529 * 13 12 2 29 29 H 1.09000 * 109.47006 * 149.99309 * 13 12 2 30 30 H 1.00901 * 111.00303 * 53.37794 * 18 16 14 31 31 H 1.00900 * 110.99901 * 177.33629 * 18 16 14 32 32 H 1.08998 * 112.84495 * 43.66409 * 19 16 14 33 33 H 1.09005 * 113.61183 * 334.56350 * 20 19 16 34 34 H 1.08998 * 113.61987 * 105.47026 * 20 19 16 35 35 H 1.09000 * 113.53476 * 270.80849 * 21 20 19 36 36 H 1.09006 * 113.74343 * 139.94362 * 21 20 19 37 37 H 1.09004 * 113.61543 * 254.52739 * 22 19 16 38 38 H 1.09000 * 113.61443 * 25.42945 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8299 -2.6034 8 14 2.3225 -1.1192 -4.0080 9 1 3.1484 -2.2853 -3.6039 10 1 1.1679 -1.5863 -4.8166 11 1 3.1473 -0.1854 -4.8160 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7931 -0.0356 2.0833 15 8 3.0864 1.1254 1.8913 16 6 3.2958 -0.7462 3.3135 17 1 3.5854 -1.7640 3.0523 18 7 4.4592 -0.0290 3.8522 19 6 2.1881 -0.7859 4.3681 20 6 2.1586 0.4539 5.2775 21 6 1.8564 -0.5069 6.4420 22 6 2.5572 -1.6006 5.6190 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7087 1.1615 -3.4844 27 1 0.7376 -2.1445 1.9992 28 1 1.5296 -2.5968 0.4706 29 1 2.4630 -2.5819 1.9862 30 1 4.2459 0.9459 4.0012 31 1 4.7885 -0.4612 4.7024 32 1 1.2150 -1.0440 3.9502 33 1 3.1227 0.9550 5.3639 34 1 1.3421 1.1404 5.0536 35 1 0.7920 -0.6877 6.5920 36 1 2.3771 -0.2543 7.3657 37 1 2.0620 -2.5704 5.6703 38 1 3.6305 -1.6623 5.7989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399105141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:03 Heat of formation + Delta-G solvation = -34.273527 kcal Electronic energy + Delta-G solvation = -18191.628222 eV Core-core repulsion = 15454.920752 eV Total energy + Delta-G solvation = -2736.707470 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.36960 -39.48320 -37.14186 -34.88319 -34.31559 -31.49801 -28.31470 -27.56799 -27.30263 -26.54974 -24.81080 -22.49822 -20.20695 -19.67104 -18.58905 -18.24350 -17.29169 -16.91221 -16.53710 -16.11476 -15.61714 -15.46655 -14.77471 -14.32039 -14.09836 -13.90242 -13.57449 -13.38426 -13.17526 -13.05244 -12.88913 -12.73043 -12.65078 -12.53998 -12.21311 -12.11146 -11.62417 -11.39387 -11.21140 -11.16261 -10.59906 -10.38566 -9.63227 -9.29980 -8.15325 -6.31901 1.40160 1.42178 1.53598 1.83500 2.30392 2.48349 3.12604 3.52731 3.62198 3.73342 3.76072 3.90620 4.01945 4.27089 4.41784 4.59952 4.70260 4.74998 4.77973 4.79481 4.86932 4.89422 5.03319 5.05907 5.06314 5.11885 5.29235 5.46625 5.53897 5.58866 5.67069 6.02966 6.09930 6.16361 6.59535 6.76638 6.86619 7.32911 7.51344 8.89378 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041730 B = 0.006010 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.811174 B = 4658.095658 C = 4709.719783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.261 3.739 3 H 0.005 0.995 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.599 5.599 13 C 0.079 3.921 14 C 0.499 3.501 15 O -0.600 6.600 16 C 0.097 3.903 17 H 0.117 0.883 18 N -0.834 5.834 19 C -0.143 4.143 20 C -0.153 4.153 21 C -0.128 4.128 22 C -0.119 4.119 23 H 0.017 0.983 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.264 0.736 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.346 0.654 31 H 0.359 0.641 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.032 -8.622 16.511 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.159 3.841 3 H 0.023 0.977 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.198 1.198 11 H -0.212 1.212 12 N -0.330 5.330 13 C -0.063 4.063 14 C 0.287 3.713 15 O -0.482 6.482 16 C -0.018 4.018 17 H 0.135 0.865 18 N -0.369 5.369 19 C -0.164 4.164 20 C -0.191 4.191 21 C -0.166 4.166 22 C -0.156 4.156 23 H 0.036 0.964 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.162 0.838 31 H 0.175 0.825 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.460 -8.128 15.585 17.638 hybrid contribution -0.548 0.421 -0.547 0.881 sum 0.912 -7.707 15.038 16.923 Atomic orbital electron populations 1.21847 0.97140 1.00072 0.99753 1.18504 0.91585 0.92109 0.81914 0.97734 1.21610 1.31737 1.13026 0.91179 0.92128 1.25767 0.95073 0.95664 1.02116 1.70039 1.37423 1.23980 1.24360 0.85377 0.78225 0.78468 0.78760 1.18854 1.19827 1.21203 1.48182 1.49184 1.13298 1.22298 1.21887 1.01103 0.80713 1.02589 1.21290 0.77920 0.86808 0.85253 1.90582 1.59721 1.19815 1.78094 1.21247 0.91199 0.98332 0.91066 0.86534 1.58660 1.33757 1.07466 1.37050 1.23318 0.99042 0.99295 0.94717 1.23147 1.01914 0.96516 0.97497 1.22766 1.01382 0.95570 0.96839 1.22929 1.01717 0.98218 0.92764 0.96362 0.91499 0.93385 0.92656 0.91601 0.91321 0.89332 0.83829 0.82454 0.89294 0.89758 0.93371 0.89812 0.89890 0.89562 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.97 71.98 0.65 -5.77 16 2 C 0.26 14.04 2.64 44.24 0.12 14.15 16 3 H 0.00 0.30 6.90 -2.39 -0.02 0.29 16 4 C -0.54 -29.94 7.99 25.60 0.20 -29.74 16 5 H 0.06 3.29 7.33 -2.91 -0.02 3.27 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -54.10 11.32 21.45 0.24 -53.86 16 8 Si 0.97 43.84 29.54 68.60 2.03 45.86 16 9 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 12 N -0.60 -26.00 2.75 -826.81 -2.28 -28.27 16 13 C 0.08 2.53 8.70 127.77 1.11 3.64 16 14 C 0.50 21.30 6.91 87.66 0.61 21.90 16 15 O -0.60 -31.72 15.42 -3.02 -0.05 -31.77 16 16 C 0.10 2.79 2.54 44.17 0.11 2.90 16 17 H 0.12 2.97 6.31 -2.39 -0.02 2.95 16 18 N -0.83 -22.78 8.43 -171.80 -1.45 -24.23 16 19 C -0.14 -3.26 3.38 -10.27 -0.03 -3.29 16 20 C -0.15 -3.41 7.33 31.18 0.23 -3.19 16 21 C -0.13 -1.99 8.09 31.18 0.25 -1.74 16 22 C -0.12 -1.77 7.49 31.12 0.23 -1.53 16 23 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 25 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 26 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.07 1.79 7.81 -2.39 -0.02 1.77 16 28 H 0.07 2.37 7.02 -2.39 -0.02 2.35 16 29 H 0.09 2.20 5.94 -2.39 -0.01 2.18 16 30 H 0.35 10.38 6.52 -89.69 -0.59 9.79 16 31 H 0.36 6.91 7.52 -89.69 -0.67 6.23 16 32 H 0.09 2.20 7.37 -2.39 -0.02 2.18 16 33 H 0.08 1.84 5.87 -2.38 -0.01 1.82 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 1.17 6.83 -2.39 -0.02 1.16 16 Total: -1.00 -71.21 296.31 2.23 -68.98 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: -0.19 Total: 24.76 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 3.93 Total: -1.47 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.48 Total: -106.36 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.05 Total: -31.77 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -71.21 2.23 -68.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399105141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.707 kcal (2) G-P(sol) polarization free energy of solvation -71.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds