Wall clock time and date at job start Mon Mar 30 2020 03:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 C 1.34779 * 119.99848 * 120.00098 * 12 2 1 15 15 O 1.21282 * 120.00232 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00153 * 180.02562 * 14 12 2 17 17 H 1.09004 * 109.47210 * 319.99603 * 16 14 12 18 18 N 1.46897 * 109.47417 * 200.00143 * 16 14 12 19 19 C 1.52999 * 109.47303 * 79.99517 * 16 14 12 20 20 C 1.53776 * 113.61566 * 277.49678 * 19 16 14 21 21 C 1.53782 * 87.08358 * 220.01868 * 20 19 16 22 22 C 1.53781 * 87.07956 * 25.43423 * 21 20 19 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 28 28 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 29 29 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 30 30 H 1.00900 * 110.99947 * 299.99867 * 18 16 14 31 31 H 1.00904 * 111.00064 * 63.94969 * 18 16 14 32 32 H 1.09000 * 112.84858 * 48.80926 * 19 16 14 33 33 H 1.08997 * 113.61928 * 334.56975 * 20 19 16 34 34 H 1.09008 * 113.61088 * 105.47268 * 20 19 16 35 35 H 1.08997 * 113.61448 * 270.88548 * 21 20 19 36 36 H 1.08998 * 113.68939 * 139.99450 * 21 20 19 37 37 H 1.08999 * 113.61321 * 220.01516 * 22 21 20 38 38 H 1.09000 * 113.61368 * 89.11195 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0866 1.1253 -1.8912 16 6 3.2951 -0.7460 -3.3140 17 1 3.5843 -1.7641 -3.0534 18 7 4.4587 -0.0293 -3.8527 19 6 2.1869 -0.7846 -4.3682 20 6 1.1781 -1.9264 -4.1599 21 6 1.1921 -2.1118 -5.6865 22 6 2.5994 -1.4920 -5.6699 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.9026 -0.5284 4.4375 27 1 0.7375 -2.1444 -1.9993 28 1 2.4628 -2.5819 -1.9863 29 1 1.5295 -2.5969 -0.4708 30 1 4.2163 0.9179 -4.1021 31 1 5.2277 -0.0457 -3.1997 32 1 1.7211 0.1877 -4.5284 33 1 1.5869 -2.7760 -3.6131 34 1 0.2164 -1.5934 -3.7693 35 1 0.4529 -1.5030 -6.2070 36 1 1.1783 -3.1553 -6.0010 37 1 2.7852 -0.8085 -6.4984 38 1 3.3968 -2.2229 -5.5358 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399105144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:06 Heat of formation + Delta-G solvation = -6.532807 kcal Electronic energy + Delta-G solvation = -18377.482102 eV Core-core repulsion = 15641.977560 eV Total energy + Delta-G solvation = -2735.504542 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.11999 -38.10618 -35.73233 -33.51851 -32.73141 -30.51458 -27.12612 -26.74351 -25.17925 -25.15397 -23.43516 -20.85038 -19.58861 -18.36990 -17.04042 -16.47616 -15.97062 -15.69561 -15.38378 -14.88581 -14.18150 -13.87929 -13.36560 -13.05670 -12.80638 -12.58467 -12.40953 -12.25078 -11.91633 -11.84592 -11.50639 -11.44277 -11.13306 -10.78130 -10.41896 -10.36426 -10.23553 -10.10602 -9.69241 -9.63187 -9.32394 -8.66973 -8.39820 -7.74863 -6.18356 -4.19066 3.18427 3.20894 3.34019 3.36693 3.80470 4.31937 4.38748 4.66061 4.74546 4.84644 5.06016 5.13894 5.20409 5.36625 5.44956 5.67587 5.73270 5.78276 5.84532 5.92181 5.97233 6.04563 6.20033 6.23955 6.26034 6.35901 6.46079 6.50668 6.79644 7.05287 7.16369 7.32694 7.52487 7.59530 8.15447 8.44133 8.79443 8.86220 9.42808 10.94299 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036140 B = 0.006942 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.584266 B = 4032.537359 C = 4232.864611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.227 3.773 3 H 0.060 0.940 4 C -0.528 4.528 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.579 5.579 13 C 0.072 3.928 14 C 0.473 3.527 15 O -0.563 6.563 16 C 0.082 3.918 17 H 0.099 0.901 18 N -0.820 5.820 19 C -0.096 4.096 20 C -0.141 4.141 21 C -0.148 4.148 22 C -0.114 4.114 23 H 0.031 0.969 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.266 0.734 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.346 0.654 31 H 0.343 0.657 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.016 -3.269 -15.776 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.124 3.876 3 H 0.078 0.922 4 C -0.567 4.567 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.309 5.309 13 C -0.071 4.071 14 C 0.259 3.741 15 O -0.443 6.443 16 C -0.034 4.034 17 H 0.117 0.883 18 N -0.347 5.347 19 C -0.115 4.115 20 C -0.179 4.179 21 C -0.186 4.186 22 C -0.151 4.151 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.864 -3.226 -16.036 16.463 hybrid contribution -0.787 1.351 1.313 2.042 sum -2.651 -1.875 -14.723 15.077 Atomic orbital electron populations 1.22431 0.99083 1.01061 0.99126 1.19283 0.89999 0.95177 0.83097 0.92217 1.21156 1.32743 1.14237 0.88520 0.90362 1.24868 0.95658 0.96586 0.95633 1.69876 1.45170 1.40168 0.97979 0.86900 0.80434 0.83815 0.77439 1.20379 1.22108 1.18931 1.47900 1.48667 1.11733 1.22559 1.22120 0.99313 0.82863 1.02841 1.21788 0.79221 0.87669 0.85447 1.90631 1.58938 1.17367 1.77330 1.21594 0.91971 0.98736 0.91051 0.88276 1.59183 1.07219 1.22160 1.46165 1.22420 0.95010 0.98945 0.95153 1.23324 0.99486 0.98676 0.96372 1.22890 0.97918 1.00937 0.96816 1.22713 0.96422 0.99337 0.96658 0.94949 0.93262 0.92560 0.92408 0.92629 0.92284 0.89926 0.84085 0.84433 0.89407 0.89014 0.91128 0.90601 0.91534 0.91732 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 8.67 37.16 0.32 -3.12 16 2 C 0.23 5.49 2.23 -69.08 -0.15 5.33 16 3 H 0.06 1.63 5.96 -51.93 -0.31 1.32 16 4 C -0.53 -14.60 8.57 -34.44 -0.30 -14.90 16 5 H 0.08 2.32 7.58 -52.49 -0.40 1.92 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 8 Si 0.88 22.00 24.37 -169.99 -4.14 17.86 16 9 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 12 N -0.58 -11.71 2.75 -175.26 -0.48 -12.19 16 13 C 0.07 1.15 7.46 59.85 0.45 1.60 16 14 C 0.47 9.27 6.92 -10.98 -0.08 9.19 16 15 O -0.56 -13.13 15.58 5.56 0.09 -13.05 16 16 C 0.08 1.19 2.45 -68.87 -0.17 1.02 16 17 H 0.10 1.35 6.15 -51.93 -0.32 1.03 16 18 N -0.82 -11.21 8.74 -5.65 -0.05 -11.26 16 19 C -0.10 -1.19 3.28 -89.81 -0.29 -1.49 16 20 C -0.14 -1.53 5.23 -25.92 -0.14 -1.67 16 21 C -0.15 -1.39 8.08 -25.92 -0.21 -1.60 16 22 C -0.11 -1.17 7.40 -25.92 -0.19 -1.37 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 25 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 26 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.06 0.76 5.57 -51.93 -0.29 0.47 16 28 H 0.06 0.79 4.89 -51.93 -0.25 0.53 16 29 H 0.08 1.47 7.02 -51.93 -0.36 1.11 16 30 H 0.35 4.88 8.58 -39.29 -0.34 4.54 16 31 H 0.34 4.72 9.06 -39.29 -0.36 4.36 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 0.94 5.64 -51.93 -0.29 0.64 16 34 H 0.07 0.80 7.43 -51.92 -0.39 0.42 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 287.58 15.07 4.33 4.33 Total: -1.00 -31.50 287.58 -5.92 -37.42 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.59 Total: 7.96 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -0.85 Total: -4.94 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.24 Total: -49.59 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.50 -5.92 -37.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399105144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.889 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds