Wall clock time and date at job start Mon Mar 30 2020 03:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 C 1.34779 * 119.99848 * 120.00098 * 12 2 1 15 15 O 1.21282 * 120.00232 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00153 * 180.02562 * 14 12 2 17 17 H 1.09004 * 109.47210 * 319.99603 * 16 14 12 18 18 N 1.46897 * 109.47417 * 200.00143 * 16 14 12 19 19 C 1.52999 * 109.47303 * 79.99517 * 16 14 12 20 20 C 1.53776 * 113.61566 * 277.49678 * 19 16 14 21 21 C 1.53782 * 87.08358 * 220.01868 * 20 19 16 22 22 C 1.53781 * 87.07956 * 25.43423 * 21 20 19 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 28 28 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 29 29 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 30 30 H 1.00900 * 110.99947 * 299.99867 * 18 16 14 31 31 H 1.00904 * 111.00064 * 63.94969 * 18 16 14 32 32 H 1.09000 * 112.84858 * 48.80926 * 19 16 14 33 33 H 1.08997 * 113.61928 * 334.56975 * 20 19 16 34 34 H 1.09008 * 113.61088 * 105.47268 * 20 19 16 35 35 H 1.08997 * 113.61448 * 270.88548 * 21 20 19 36 36 H 1.08998 * 113.68939 * 139.99450 * 21 20 19 37 37 H 1.08999 * 113.61321 * 220.01516 * 22 21 20 38 38 H 1.09000 * 113.61368 * 89.11195 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0866 1.1253 -1.8912 16 6 3.2951 -0.7460 -3.3140 17 1 3.5843 -1.7641 -3.0534 18 7 4.4587 -0.0293 -3.8527 19 6 2.1869 -0.7846 -4.3682 20 6 1.1781 -1.9264 -4.1599 21 6 1.1921 -2.1118 -5.6865 22 6 2.5994 -1.4920 -5.6699 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.9026 -0.5284 4.4375 27 1 0.7375 -2.1444 -1.9993 28 1 2.4628 -2.5819 -1.9863 29 1 1.5295 -2.5969 -0.4708 30 1 4.2163 0.9179 -4.1021 31 1 5.2277 -0.0457 -3.1997 32 1 1.7211 0.1877 -4.5284 33 1 1.5869 -2.7760 -3.6131 34 1 0.2164 -1.5934 -3.7693 35 1 0.4529 -1.5030 -6.2070 36 1 1.1783 -3.1553 -6.0010 37 1 2.7852 -0.8085 -6.4984 38 1 3.3968 -2.2229 -5.5358 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399105144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:05 Heat of formation + Delta-G solvation = -30.271732 kcal Electronic energy + Delta-G solvation = -18378.511499 eV Core-core repulsion = 15641.977560 eV Total energy + Delta-G solvation = -2736.533939 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.45024 -39.26719 -37.43600 -34.87896 -34.57845 -32.34856 -28.23351 -28.05852 -27.19415 -26.11478 -24.69623 -22.43686 -20.57226 -19.85699 -18.95113 -18.02344 -17.45146 -17.12508 -16.56541 -16.30821 -15.68056 -15.26443 -14.90538 -14.61304 -14.21735 -14.10195 -13.84331 -13.67046 -13.51177 -13.08684 -12.83629 -12.73429 -12.61192 -12.42959 -12.11056 -11.63275 -11.45508 -11.34333 -11.29133 -11.02453 -10.92882 -10.83369 -9.72453 -9.39733 -8.39237 -6.43630 1.21857 1.31455 1.39850 1.67453 2.23441 2.28014 2.96072 3.33076 3.65753 3.80323 3.89719 4.01092 4.17799 4.30550 4.41614 4.44454 4.47821 4.54430 4.57261 4.74894 4.90457 4.92664 4.99970 5.02347 5.07563 5.18916 5.25106 5.26794 5.42953 5.46087 5.67681 5.68783 5.95144 6.16544 6.35734 6.58262 6.71798 7.16826 7.32288 8.76691 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036140 B = 0.006942 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.584266 B = 4032.537359 C = 4232.864611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.229 3.771 3 H 0.026 0.974 4 C -0.527 4.527 5 H 0.046 0.954 6 C 0.023 3.977 7 N -0.938 5.938 8 Si 0.941 3.059 9 H -0.253 1.253 10 H -0.295 1.295 11 H -0.266 1.266 12 N -0.586 5.586 13 C 0.070 3.930 14 C 0.464 3.536 15 O -0.608 6.608 16 C 0.095 3.905 17 H 0.115 0.885 18 N -0.809 5.809 19 C -0.103 4.103 20 C -0.143 4.143 21 C -0.137 4.137 22 C -0.106 4.106 23 H 0.053 0.947 24 H 0.040 0.960 25 H 0.071 0.929 26 H 0.269 0.731 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.344 0.656 31 H 0.343 0.657 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.245 -3.970 -17.843 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.125 3.875 3 H 0.044 0.956 4 C -0.565 4.565 5 H 0.064 0.936 6 C -0.176 4.176 7 N -0.577 5.577 8 Si 0.769 3.231 9 H -0.178 1.178 10 H -0.222 1.222 11 H -0.191 1.191 12 N -0.315 5.315 13 C -0.072 4.072 14 C 0.252 3.748 15 O -0.491 6.491 16 C -0.021 4.021 17 H 0.132 0.868 18 N -0.336 5.336 19 C -0.122 4.122 20 C -0.180 4.180 21 C -0.174 4.174 22 C -0.144 4.144 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.105 -3.964 -18.137 18.823 hybrid contribution -0.302 1.531 1.921 2.474 sum -3.407 -2.433 -16.216 16.748 Atomic orbital electron populations 1.22285 0.96618 1.02303 0.99721 1.18944 0.91844 0.93274 0.83457 0.95647 1.21366 1.31785 1.13141 0.90218 0.93559 1.25635 0.97137 0.99416 0.95368 1.69998 1.47034 1.42074 0.98594 0.85976 0.79998 0.80192 0.76981 1.17795 1.22210 1.19133 1.47981 1.48833 1.13294 1.21414 1.22367 1.01890 0.80375 1.02536 1.22855 0.78120 0.87379 0.86456 1.90600 1.60404 1.19584 1.78513 1.21704 0.92668 0.98514 0.89182 0.86775 1.59242 1.06843 1.22035 1.45472 1.22488 0.94856 0.99171 0.95684 1.23377 0.98706 0.98085 0.97868 1.22836 0.97105 1.01961 0.95491 1.22690 0.97343 0.99127 0.95202 0.92759 0.94148 0.90993 0.92208 0.89624 0.89375 0.92118 0.84302 0.84539 0.90840 0.88006 0.91515 0.90154 0.89879 0.91517 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.29 8.67 71.98 0.62 -5.66 16 2 C 0.23 11.07 2.23 44.25 0.10 11.17 16 3 H 0.03 1.42 5.96 -2.39 -0.01 1.40 16 4 C -0.53 -29.70 8.57 25.60 0.22 -29.48 16 5 H 0.05 2.84 7.58 -2.91 -0.02 2.81 16 6 C 0.02 1.35 5.45 84.66 0.46 1.81 16 7 N -0.94 -57.60 13.96 21.45 0.30 -57.30 16 8 Si 0.94 45.52 24.37 68.60 1.67 47.20 16 9 H -0.25 -11.17 6.87 99.48 0.68 -10.49 16 10 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 11 H -0.27 -12.87 6.53 99.48 0.65 -12.22 16 12 N -0.59 -23.32 2.75 -826.79 -2.28 -25.60 16 13 C 0.07 2.11 7.46 127.77 0.95 3.06 16 14 C 0.46 17.96 6.92 87.66 0.61 18.57 16 15 O -0.61 -28.80 15.58 -3.04 -0.05 -28.85 16 16 C 0.09 2.59 2.45 44.17 0.11 2.70 16 17 H 0.11 2.79 6.15 -2.38 -0.01 2.77 16 18 N -0.81 -21.11 8.74 -171.80 -1.50 -22.61 16 19 C -0.10 -2.30 3.28 -10.27 -0.03 -2.34 16 20 C -0.14 -2.61 5.23 31.12 0.16 -2.45 16 21 C -0.14 -2.05 8.08 31.12 0.25 -1.79 16 22 C -0.11 -1.85 7.40 31.12 0.23 -1.62 16 23 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.04 1.74 3.27 -2.39 -0.01 1.73 16 25 H 0.07 2.72 7.67 -2.38 -0.02 2.71 16 26 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 27 H 0.09 2.07 5.57 -2.38 -0.01 2.06 16 28 H 0.09 2.11 4.89 -2.39 -0.01 2.10 16 29 H 0.06 2.11 7.02 -2.39 -0.02 2.10 16 30 H 0.34 9.46 8.58 -89.69 -0.77 8.69 16 31 H 0.34 9.13 9.06 -89.69 -0.81 8.31 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.10 1.66 5.64 -2.39 -0.01 1.64 16 34 H 0.07 1.29 7.43 -2.38 -0.02 1.28 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.50 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -69.72 287.58 1.25 -68.47 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -0.58 Total: 24.72 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 3.68 Total: -6.03 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -3.48 Total: -105.51 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.05 Total: -28.85 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.67 Total: 47.20 kcal Total: -69.72 1.25 -68.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399105144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.202 kcal (2) G-P(sol) polarization free energy of solvation -69.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds