Wall clock time and date at job start Mon Mar 30 2020 03:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46970 * 2 1 4 4 C 1.50693 * 109.47044 * 120.00193 * 2 1 3 5 5 H 1.08001 * 120.00341 * 119.99848 * 4 2 1 6 6 C 1.37886 * 120.00123 * 299.99677 * 4 2 1 7 7 N 1.31512 * 119.99783 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99749 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46973 * 89.99998 * 8 6 4 10 10 H 1.48493 * 109.47055 * 209.99858 * 8 6 4 11 11 H 1.48503 * 109.47144 * 330.00148 * 8 6 4 12 12 N 1.46496 * 109.46620 * 240.00028 * 2 1 3 13 13 C 1.46504 * 120.00482 * 299.99872 * 12 2 1 14 14 C 1.34779 * 119.99982 * 120.00648 * 12 2 1 15 15 O 1.21284 * 119.99650 * 359.97438 * 14 12 2 16 16 C 1.50701 * 120.00047 * 179.97438 * 14 12 2 17 17 H 1.08998 * 109.47193 * 39.99436 * 16 14 12 18 18 N 1.46897 * 109.47037 * 159.99627 * 16 14 12 19 19 C 1.53002 * 109.46931 * 279.99595 * 16 14 12 20 20 C 1.53788 * 113.61223 * 278.41926 * 19 16 14 21 21 C 1.53961 * 87.01587 * 220.04862 * 20 19 16 22 22 C 1.53779 * 113.61403 * 180.81151 * 19 16 14 23 23 H 1.09004 * 109.47366 * 60.00011 * 1 2 3 24 24 H 1.08999 * 109.47654 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46967 * 300.00138 * 1 2 3 26 26 H 0.96998 * 119.99566 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46996 * 270.00543 * 13 12 2 28 28 H 1.09004 * 109.46826 * 29.99984 * 13 12 2 29 29 H 1.08996 * 109.47359 * 150.00167 * 13 12 2 30 30 H 1.00902 * 111.00156 * 292.55060 * 18 16 14 31 31 H 1.00902 * 111.00427 * 56.50499 * 18 16 14 32 32 H 1.08997 * 112.85127 * 49.61180 * 19 16 14 33 33 H 1.08998 * 113.61371 * 334.56597 * 20 19 16 34 34 H 1.09000 * 113.61472 * 105.46895 * 20 19 16 35 35 H 1.08997 * 113.53380 * 270.80912 * 21 20 19 36 36 H 1.09000 * 113.73833 * 139.94090 * 21 20 19 37 37 H 1.08992 * 113.61400 * 254.52809 * 22 19 16 38 38 H 1.09007 * 113.61450 * 25.43522 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 2.1381 -0.8591 3.5565 8 14 0.6248 1.2791 2.6542 9 1 -0.8028 0.8726 2.6998 10 1 0.9759 1.9950 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0182 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7931 -0.0357 -2.0833 15 8 3.0859 1.1256 -1.8915 16 6 3.2958 -0.7462 -3.3136 17 1 2.5067 -1.3831 -3.7132 18 7 3.6857 0.2441 -4.3260 19 6 4.5078 -1.6051 -2.9469 20 6 5.8251 -0.8145 -2.8786 21 6 6.4932 -2.0249 -3.5561 22 6 5.1118 -2.3606 -4.1425 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.9041 -0.5275 4.4375 27 1 2.4156 -2.7377 -0.9717 28 1 0.6903 -2.3002 -0.9846 29 1 1.6236 -2.2852 -2.5002 30 1 2.8801 0.7424 -4.6735 31 1 4.3759 0.8828 -3.9602 32 1 4.3315 -2.2360 -2.0757 33 1 5.8264 0.0857 -3.4932 34 1 6.1740 -0.6344 -1.8617 35 1 6.8610 -2.7701 -2.8509 36 1 7.2329 -1.7532 -4.3091 37 1 4.8857 -3.4268 -4.1445 38 1 4.9178 -1.8838 -5.1034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399105146.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:08 Heat of formation + Delta-G solvation = -6.734049 kcal Electronic energy + Delta-G solvation = -18300.103802 eV Core-core repulsion = 15564.590534 eV Total energy + Delta-G solvation = -2735.513268 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.03561 -38.11595 -35.64965 -33.42085 -32.67595 -30.49629 -27.20916 -26.30434 -25.43275 -25.15315 -23.50176 -20.85606 -18.97571 -18.34862 -17.16022 -16.54125 -16.16779 -15.85725 -15.09736 -14.75142 -14.30909 -13.89963 -13.25337 -12.99248 -12.82617 -12.49088 -12.27857 -12.06698 -11.92578 -11.78073 -11.70051 -11.38101 -11.17534 -10.72460 -10.40850 -10.24343 -10.16200 -10.02852 -9.69137 -9.63503 -9.32504 -8.66449 -8.40857 -7.76227 -6.17271 -4.17823 3.18353 3.20729 3.34204 3.36573 3.80528 4.32418 4.60389 4.72568 4.85421 4.93334 5.00802 5.11112 5.19824 5.47704 5.57473 5.71921 5.81886 5.90403 5.96441 6.00461 6.03556 6.17097 6.21213 6.22705 6.29292 6.40971 6.45289 6.69066 6.80392 7.04269 7.16003 7.31096 7.48552 7.60309 8.15533 8.44888 8.80629 8.86805 9.43830 10.95514 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032880 B = 0.007015 C = 0.006639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.386551 B = 3990.503417 C = 4216.599414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.227 3.773 3 H 0.061 0.939 4 C -0.527 4.527 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.895 5.895 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.265 1.265 12 N -0.583 5.583 13 C 0.085 3.915 14 C 0.475 3.525 15 O -0.560 6.560 16 C 0.082 3.918 17 H 0.099 0.901 18 N -0.821 5.821 19 C -0.100 4.100 20 C -0.134 4.134 21 C -0.141 4.141 22 C -0.124 4.124 23 H 0.032 0.968 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.266 0.734 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.340 0.660 31 H 0.349 0.651 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 -2.995 -14.394 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.125 3.875 3 H 0.078 0.922 4 C -0.565 4.565 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.313 5.313 13 C -0.059 4.059 14 C 0.261 3.739 15 O -0.440 6.440 16 C -0.034 4.034 17 H 0.117 0.883 18 N -0.351 5.351 19 C -0.119 4.119 20 C -0.172 4.172 21 C -0.179 4.179 22 C -0.161 4.161 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.151 0.849 31 H 0.165 0.835 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.205 -3.020 -14.498 14.973 hybrid contribution -1.140 1.333 1.187 2.118 sum 1.065 -1.687 -13.311 13.459 Atomic orbital electron populations 1.22458 0.99194 1.01041 0.99206 1.19285 0.89907 0.95192 0.83139 0.92160 1.21152 1.32675 1.14197 0.88474 0.90383 1.24873 0.95685 0.96561 0.95648 1.69874 1.45200 1.40182 0.97966 0.86911 0.80433 0.83854 0.77444 1.20398 1.22098 1.18948 1.47941 1.48855 1.11761 1.22763 1.21666 1.01867 0.82809 0.99568 1.21750 0.78866 0.87636 0.85695 1.90625 1.58687 1.17510 1.77168 1.21418 0.97963 0.94636 0.89334 0.88290 1.59270 1.17122 1.22152 1.36581 1.22499 0.92697 0.97456 0.99259 1.22912 0.95569 0.97604 1.01077 1.22795 0.96712 0.98444 0.99926 1.22875 0.95511 0.99302 0.98431 0.94928 0.92502 0.93166 0.92430 0.92660 0.90846 0.92487 0.84851 0.83502 0.88564 0.89439 0.91709 0.90616 0.91753 0.92119 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.65 37.16 0.32 -3.15 16 2 C 0.23 5.50 2.23 -69.09 -0.15 5.34 16 3 H 0.06 1.64 5.96 -51.93 -0.31 1.33 16 4 C -0.53 -14.61 8.95 -34.44 -0.31 -14.92 16 5 H 0.08 2.33 7.89 -52.49 -0.41 1.91 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 8 Si 0.88 22.00 24.37 -169.99 -4.14 17.86 16 9 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 12 N -0.58 -11.82 2.75 -175.26 -0.48 -12.30 16 13 C 0.08 1.36 8.92 59.85 0.53 1.89 16 14 C 0.48 9.23 6.91 -10.98 -0.08 9.16 16 15 O -0.56 -12.92 15.49 5.55 0.09 -12.84 16 16 C 0.08 1.18 2.48 -68.86 -0.17 1.01 16 17 H 0.10 1.26 6.31 -51.93 -0.33 0.93 16 18 N -0.82 -10.70 8.05 -5.65 -0.05 -10.74 16 19 C -0.10 -1.37 3.39 -89.80 -0.30 -1.67 16 20 C -0.13 -1.84 7.39 -25.82 -0.19 -2.03 16 21 C -0.14 -1.60 8.09 -25.82 -0.21 -1.81 16 22 C -0.12 -1.39 7.53 -25.92 -0.20 -1.58 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 1.13 6.66 -51.93 -0.35 0.79 16 25 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 26 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.05 0.90 7.76 -51.93 -0.40 0.50 16 28 H 0.07 1.18 6.43 -51.93 -0.33 0.84 16 29 H 0.06 0.71 5.94 -51.93 -0.31 0.40 16 30 H 0.34 4.16 9.08 -39.29 -0.36 3.80 16 31 H 0.35 4.90 6.35 -39.29 -0.25 4.65 16 32 H 0.10 1.42 7.28 -51.93 -0.38 1.04 16 33 H 0.09 1.18 5.86 -51.93 -0.30 0.87 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.05 7.68 -51.92 -0.40 0.65 16 LS Contribution 290.60 15.07 4.38 4.38 Total: -1.00 -31.51 290.60 -5.88 -37.39 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.59 Total: 8.20 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.85 Total: -5.72 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.25 Total: -49.27 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.51 -5.88 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399105146.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.656 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds