Wall clock time and date at job start Mon Mar 30 2020 03:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46970 * 2 1 4 4 C 1.50693 * 109.47044 * 120.00193 * 2 1 3 5 5 H 1.08001 * 120.00341 * 119.99848 * 4 2 1 6 6 C 1.37886 * 120.00123 * 299.99677 * 4 2 1 7 7 N 1.31512 * 119.99783 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99749 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46973 * 89.99998 * 8 6 4 10 10 H 1.48493 * 109.47055 * 209.99858 * 8 6 4 11 11 H 1.48503 * 109.47144 * 330.00148 * 8 6 4 12 12 N 1.46496 * 109.46620 * 240.00028 * 2 1 3 13 13 C 1.46504 * 120.00482 * 299.99872 * 12 2 1 14 14 C 1.34779 * 119.99982 * 120.00648 * 12 2 1 15 15 O 1.21284 * 119.99650 * 359.97438 * 14 12 2 16 16 C 1.50701 * 120.00047 * 179.97438 * 14 12 2 17 17 H 1.08998 * 109.47193 * 39.99436 * 16 14 12 18 18 N 1.46897 * 109.47037 * 159.99627 * 16 14 12 19 19 C 1.53002 * 109.46931 * 279.99595 * 16 14 12 20 20 C 1.53788 * 113.61223 * 278.41926 * 19 16 14 21 21 C 1.53961 * 87.01587 * 220.04862 * 20 19 16 22 22 C 1.53779 * 113.61403 * 180.81151 * 19 16 14 23 23 H 1.09004 * 109.47366 * 60.00011 * 1 2 3 24 24 H 1.08999 * 109.47654 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46967 * 300.00138 * 1 2 3 26 26 H 0.96998 * 119.99566 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46996 * 270.00543 * 13 12 2 28 28 H 1.09004 * 109.46826 * 29.99984 * 13 12 2 29 29 H 1.08996 * 109.47359 * 150.00167 * 13 12 2 30 30 H 1.00902 * 111.00156 * 292.55060 * 18 16 14 31 31 H 1.00902 * 111.00427 * 56.50499 * 18 16 14 32 32 H 1.08997 * 112.85127 * 49.61180 * 19 16 14 33 33 H 1.08998 * 113.61371 * 334.56597 * 20 19 16 34 34 H 1.09000 * 113.61472 * 105.46895 * 20 19 16 35 35 H 1.08997 * 113.53380 * 270.80912 * 21 20 19 36 36 H 1.09000 * 113.73833 * 139.94090 * 21 20 19 37 37 H 1.08992 * 113.61400 * 254.52809 * 22 19 16 38 38 H 1.09007 * 113.61450 * 25.43522 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 2.1381 -0.8591 3.5565 8 14 0.6248 1.2791 2.6542 9 1 -0.8028 0.8726 2.6998 10 1 0.9759 1.9950 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0182 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7931 -0.0357 -2.0833 15 8 3.0859 1.1256 -1.8915 16 6 3.2958 -0.7462 -3.3136 17 1 2.5067 -1.3831 -3.7132 18 7 3.6857 0.2441 -4.3260 19 6 4.5078 -1.6051 -2.9469 20 6 5.8251 -0.8145 -2.8786 21 6 6.4932 -2.0249 -3.5561 22 6 5.1118 -2.3606 -4.1425 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.9041 -0.5275 4.4375 27 1 2.4156 -2.7377 -0.9717 28 1 0.6903 -2.3002 -0.9846 29 1 1.6236 -2.2852 -2.5002 30 1 2.8801 0.7424 -4.6735 31 1 4.3759 0.8828 -3.9602 32 1 4.3315 -2.2360 -2.0757 33 1 5.8264 0.0857 -3.4932 34 1 6.1740 -0.6344 -1.8617 35 1 6.8610 -2.7701 -2.8509 36 1 7.2329 -1.7532 -4.3091 37 1 4.8857 -3.4268 -4.1445 38 1 4.9178 -1.8838 -5.1034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399105146.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:08 Heat of formation + Delta-G solvation = -30.050828 kcal Electronic energy + Delta-G solvation = -18301.114894 eV Core-core repulsion = 15564.590534 eV Total energy + Delta-G solvation = -2736.524360 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.40441 -39.37729 -37.35030 -34.91240 -34.39220 -32.31647 -28.36239 -27.74119 -27.17899 -26.43154 -24.82202 -22.45670 -20.13866 -19.78910 -19.01353 -18.03101 -17.59337 -17.47135 -16.53853 -16.21838 -15.49795 -15.37692 -15.03065 -14.67841 -14.18375 -13.99076 -13.94232 -13.61940 -13.15382 -13.07802 -13.02105 -12.87792 -12.60775 -12.52438 -12.09619 -11.62910 -11.46788 -11.39849 -11.28794 -11.07688 -10.90501 -10.83929 -9.69799 -9.42820 -8.39102 -6.43615 1.21606 1.31303 1.39726 1.67567 2.23372 2.29287 2.95989 3.45810 3.60631 3.79185 3.87303 3.95996 4.05384 4.34502 4.38456 4.41862 4.48456 4.56572 4.62173 4.74455 4.81544 4.93293 4.96627 5.02352 5.06192 5.11730 5.19403 5.28640 5.41528 5.45309 5.68229 5.70996 5.99371 6.17195 6.40093 6.58375 6.72511 7.17161 7.32946 8.77056 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032880 B = 0.007015 C = 0.006639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.386551 B = 3990.503417 C = 4216.599414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.229 3.771 3 H 0.027 0.973 4 C -0.526 4.526 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.939 5.939 8 Si 0.942 3.058 9 H -0.252 1.252 10 H -0.295 1.295 11 H -0.265 1.265 12 N -0.591 5.591 13 C 0.081 3.919 14 C 0.466 3.534 15 O -0.604 6.604 16 C 0.097 3.903 17 H 0.127 0.873 18 N -0.807 5.807 19 C -0.108 4.108 20 C -0.146 4.146 21 C -0.133 4.133 22 C -0.105 4.105 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.269 0.731 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.347 0.653 31 H 0.344 0.656 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.712 -3.531 -16.782 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.125 3.875 3 H 0.044 0.956 4 C -0.565 4.565 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.578 5.578 8 Si 0.769 3.231 9 H -0.177 1.177 10 H -0.222 1.222 11 H -0.190 1.190 12 N -0.321 5.321 13 C -0.061 4.061 14 C 0.254 3.746 15 O -0.486 6.486 16 C -0.019 4.019 17 H 0.145 0.855 18 N -0.337 5.337 19 C -0.127 4.127 20 C -0.184 4.184 21 C -0.170 4.170 22 C -0.142 4.142 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.110 -3.589 -16.924 17.336 hybrid contribution -0.696 1.470 1.918 2.515 sum 0.414 -2.119 -15.006 15.161 Atomic orbital electron populations 1.22308 0.96593 1.02348 0.99868 1.18944 0.91841 0.93281 0.83454 0.95559 1.21367 1.31732 1.13077 0.90296 0.93828 1.25662 0.97184 0.99474 0.95345 1.70002 1.47087 1.42140 0.98598 0.85960 0.79974 0.80116 0.77004 1.17719 1.22246 1.19033 1.48032 1.49097 1.13319 1.21648 1.21894 1.01530 0.80198 1.02491 1.22847 0.77698 0.87332 0.86764 1.90596 1.59962 1.19678 1.78402 1.21482 0.98731 0.94717 0.86957 0.85526 1.59300 1.17155 1.22007 1.35234 1.22558 0.92209 0.97621 1.00304 1.22995 0.96647 0.98930 0.99848 1.22774 0.97368 0.96932 0.99964 1.22791 0.94234 1.00013 0.97185 0.92547 0.90905 0.94092 0.92233 0.93465 0.90672 0.88013 0.84064 0.84117 0.89959 0.89241 0.94574 0.90408 0.90202 0.90306 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.33 8.65 71.98 0.62 -5.71 16 2 C 0.23 11.08 2.23 44.24 0.10 11.18 16 3 H 0.03 1.46 5.96 -2.39 -0.01 1.45 16 4 C -0.53 -29.92 8.95 25.60 0.23 -29.69 16 5 H 0.04 2.71 7.89 -2.91 -0.02 2.69 16 6 C 0.02 1.29 5.45 84.66 0.46 1.75 16 7 N -0.94 -58.09 13.96 21.45 0.30 -57.79 16 8 Si 0.94 45.61 24.37 68.60 1.67 47.28 16 9 H -0.25 -11.12 6.87 99.48 0.68 -10.43 16 10 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 11 H -0.27 -12.79 6.53 99.48 0.65 -12.14 16 12 N -0.59 -23.59 2.75 -826.79 -2.28 -25.86 16 13 C 0.08 2.46 8.92 127.77 1.14 3.60 16 14 C 0.47 17.82 6.91 87.66 0.61 18.42 16 15 O -0.60 -28.19 15.49 -3.04 -0.05 -28.24 16 16 C 0.10 2.57 2.48 44.17 0.11 2.68 16 17 H 0.13 2.68 6.31 -2.39 -0.02 2.67 16 18 N -0.81 -19.25 8.05 -171.80 -1.38 -20.63 16 19 C -0.11 -2.77 3.39 -10.26 -0.03 -2.81 16 20 C -0.15 -3.95 7.39 31.18 0.23 -3.72 16 21 C -0.13 -2.74 8.09 31.18 0.25 -2.48 16 22 C -0.10 -2.01 7.53 31.12 0.23 -1.77 16 23 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.07 2.74 6.66 -2.39 -0.02 2.72 16 25 H 0.04 1.76 3.27 -2.38 -0.01 1.75 16 26 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.05 1.51 7.76 -2.38 -0.02 1.49 16 28 H 0.07 2.25 6.43 -2.38 -0.02 2.23 16 29 H 0.10 2.14 5.94 -2.39 -0.01 2.13 16 30 H 0.35 7.63 9.08 -89.69 -0.81 6.82 16 31 H 0.34 9.25 6.35 -89.69 -0.57 8.68 16 32 H 0.08 2.37 7.28 -2.39 -0.02 2.35 16 33 H 0.09 2.36 5.86 -2.39 -0.01 2.34 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 1.83 7.68 -2.38 -0.02 1.82 16 Total: -1.00 -70.43 290.60 1.83 -68.60 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.39 Total: 25.19 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 3.95 Total: -8.56 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -3.36 Total: -104.28 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.05 Total: -28.24 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.67 Total: 47.28 kcal Total: -70.43 1.83 -68.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399105146.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.553 kcal (2) G-P(sol) polarization free energy of solvation -70.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds