Wall clock time and date at job start Mon Mar 30 2020 04:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47475 * 2 1 4 4 C 1.46502 * 119.99611 * 274.03493 * 3 2 1 5 5 C 1.50699 * 109.46776 * 269.99530 * 4 3 2 6 6 H 1.07994 * 120.00383 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99447 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99487 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00319 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47276 * 89.99717 * 9 7 5 11 11 H 1.48503 * 109.47061 * 209.99720 * 9 7 5 12 12 H 1.48497 * 109.46878 * 329.99700 * 9 7 5 13 13 C 1.34774 * 119.99915 * 94.03351 * 3 2 1 14 14 O 1.21280 * 120.00226 * 355.03351 * 13 3 2 15 15 C 1.50702 * 119.99893 * 175.03473 * 13 3 2 16 16 H 1.09001 * 109.47057 * 33.12174 * 15 13 3 17 17 N 1.46898 * 109.47313 * 153.12515 * 15 13 3 18 18 C 1.53004 * 109.46856 * 273.12774 * 15 13 3 19 19 C 1.53785 * 113.61173 * 178.31312 * 18 15 13 20 20 C 1.53779 * 87.08052 * 139.97575 * 19 18 15 21 21 C 1.53783 * 87.17509 * 334.52687 * 20 19 18 22 22 H 1.09004 * 109.46824 * 304.97545 * 1 2 3 23 23 H 1.09001 * 109.47066 * 64.97734 * 1 2 3 24 24 H 1.08999 * 109.47506 * 184.97785 * 1 2 3 25 25 H 1.09007 * 109.47213 * 239.99674 * 2 1 3 26 26 H 1.08999 * 109.47061 * 120.00426 * 2 1 3 27 27 H 1.08995 * 109.47414 * 30.00239 * 4 3 2 28 28 H 1.09003 * 109.46633 * 150.00226 * 4 3 2 29 29 H 0.97005 * 119.99419 * 179.97438 * 8 7 5 30 30 H 1.00899 * 110.99514 * 53.05698 * 17 15 13 31 31 H 1.00893 * 111.00371 * 177.01257 * 17 15 13 32 32 H 1.08995 * 112.90690 * 47.06259 * 18 15 13 33 33 H 1.09005 * 113.60960 * 25.43116 * 19 18 15 34 34 H 1.08991 * 113.61521 * 254.52929 * 19 18 15 35 35 H 1.09004 * 113.61303 * 89.11590 * 20 19 18 36 36 H 1.08997 * 113.61798 * 219.93084 * 20 19 18 37 37 H 1.09003 * 113.61338 * 140.01936 * 21 20 19 38 38 H 1.08997 * 113.61086 * 270.92523 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1784 2.1015 -1.2657 5 6 3.5695 1.8760 -1.7995 6 1 4.2647 1.2577 -1.2511 7 6 3.9547 2.4592 -2.9880 8 7 5.1686 2.2620 -3.4542 9 14 2.7524 3.5292 -3.9362 10 1 2.8851 4.9389 -3.4886 11 1 3.0500 3.4408 -5.3884 12 1 1.3666 3.0585 -3.6853 13 6 2.3205 1.9891 1.1643 14 8 2.1034 1.4263 2.2165 15 6 2.9279 3.3683 1.1588 16 1 2.5381 3.9336 0.3122 17 7 2.5848 4.0595 2.4088 18 6 4.4490 3.2551 1.0395 19 6 5.1654 4.6148 0.9835 20 6 6.2427 3.9959 1.8896 21 6 5.1584 3.0257 2.3876 22 1 -0.3633 0.5891 0.8421 23 1 -0.3633 0.4347 -0.9312 24 1 -0.3634 -1.0237 0.0892 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.4484 1.7348 -1.9872 28 1 2.0214 3.1673 -1.0994 29 1 5.4394 2.6719 -4.2906 30 1 2.8348 3.5010 3.2110 31 1 3.0207 4.9684 2.4508 32 1 4.7630 2.5636 0.2576 33 1 4.6072 5.4222 1.4576 34 1 5.5283 4.8764 -0.0104 35 1 7.0472 3.5069 1.3402 36 1 6.6082 4.6749 2.6599 37 1 5.5159 2.0054 2.5264 38 1 4.5985 3.3995 3.2448 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399134368.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:34 Heat of formation + Delta-G solvation = -16.336514 kcal Electronic energy + Delta-G solvation = -18544.488724 eV Core-core repulsion = 15808.559062 eV Total energy + Delta-G solvation = -2735.929663 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.88536 -38.03439 -35.31466 -33.17233 -32.62815 -30.68163 -27.70327 -26.85593 -25.29795 -23.77076 -22.67047 -21.63474 -18.83882 -18.04257 -17.00996 -16.83237 -15.72766 -15.54032 -14.85538 -14.63457 -14.34182 -13.77252 -13.18595 -13.06813 -12.74455 -12.50207 -12.20917 -12.07722 -11.91951 -11.66306 -11.63905 -11.23793 -10.91339 -10.75022 -10.46052 -10.30456 -10.26698 -10.09253 -9.84532 -9.57063 -8.94327 -8.72032 -8.29993 -7.73562 -6.24501 -4.25230 3.15818 3.24387 3.26287 3.38045 3.81856 4.24662 4.94875 4.99372 5.04955 5.07861 5.15340 5.19860 5.44716 5.67914 5.76102 5.82249 5.85683 5.89191 6.00644 6.03525 6.21018 6.22922 6.33102 6.36490 6.43025 6.51746 6.57347 6.63734 6.74044 6.99692 7.32825 7.41591 7.47968 7.77927 8.13893 8.40553 8.78516 8.97378 9.35481 10.87519 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.016173 B = 0.012070 C = 0.008108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.887171 B = 2319.234334 C = 3452.347728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.590 5.590 4 C 0.206 3.794 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.889 5.889 9 Si 0.868 3.132 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.530 3.470 14 O -0.567 6.567 15 C 0.086 3.914 16 H 0.105 0.895 17 N -0.833 5.833 18 C -0.130 4.130 19 C -0.135 4.135 20 C -0.138 4.138 21 C -0.144 4.144 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.266 0.734 30 H 0.347 0.653 31 H 0.339 0.661 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 2.794 6.454 7.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.321 5.321 4 C 0.085 3.915 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.694 3.306 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.318 3.682 14 O -0.447 6.447 15 C -0.028 4.028 16 H 0.122 0.878 17 N -0.366 5.366 18 C -0.150 4.150 19 C -0.173 4.173 20 C -0.175 4.175 21 C -0.182 4.182 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.163 0.837 31 H 0.153 0.847 32 H 0.143 0.857 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.429 2.493 6.569 7.819 hybrid contribution 0.566 0.586 -0.709 1.080 sum -2.863 3.079 5.861 7.213 Atomic orbital electron populations 1.22114 0.96885 1.01305 1.01860 1.21252 0.93386 0.83526 1.02653 1.47890 1.63338 1.13576 1.07277 1.19851 0.98228 0.92059 0.81403 1.21329 0.96634 1.32404 1.07105 0.90243 1.24844 0.94948 0.95862 0.96864 1.69890 1.17816 1.43878 1.21091 0.86972 0.82193 0.81529 0.79860 1.19827 1.20951 1.18891 1.20237 0.77175 0.87537 0.83276 1.90560 1.55646 1.67135 1.31330 1.21249 0.94142 0.93294 0.94131 0.87772 1.58868 1.66683 1.06942 1.04080 1.23399 0.93383 0.99310 0.98920 1.22894 0.97411 0.96460 1.00491 1.22736 0.96920 0.98714 0.99151 1.23079 0.97799 0.99818 0.97475 0.92679 0.92797 0.92366 0.90432 0.90874 0.94837 0.95219 0.92400 0.83749 0.84720 0.85655 0.90973 0.90801 0.90141 0.92164 0.91760 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.24 37.16 0.38 -2.20 16 2 C 0.12 2.12 6.14 -4.04 -0.02 2.09 16 3 N -0.59 -12.19 2.46 -175.06 -0.43 -12.62 16 4 C 0.21 4.51 4.01 -5.19 -0.02 4.49 16 5 C -0.54 -13.48 8.44 -34.44 -0.29 -13.77 16 6 H 0.08 2.23 7.34 -52.49 -0.39 1.84 16 7 C 0.08 2.04 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -24.90 13.96 55.43 0.77 -24.13 16 9 Si 0.87 19.46 27.47 -169.99 -4.67 14.80 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 13 C 0.53 11.04 6.86 -10.99 -0.08 10.96 16 14 O -0.57 -12.73 15.72 5.56 0.09 -12.64 16 15 C 0.09 1.59 2.71 -68.86 -0.19 1.40 16 16 H 0.10 2.00 5.92 -51.93 -0.31 1.69 16 17 N -0.83 -13.30 8.59 -5.65 -0.05 -13.35 16 18 C -0.13 -2.32 3.45 -89.66 -0.31 -2.63 16 19 C -0.13 -2.09 7.49 -25.92 -0.19 -2.28 16 20 C -0.14 -1.97 8.07 -25.92 -0.21 -2.18 16 21 C -0.14 -2.25 7.38 -25.78 -0.19 -2.44 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.40 8.10 -51.92 -0.42 0.98 16 26 H 0.07 1.36 7.38 -51.93 -0.38 0.98 16 27 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 28 H 0.03 0.64 5.34 -51.93 -0.28 0.36 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.35 5.59 6.45 -39.29 -0.25 5.34 16 31 H 0.34 4.57 7.33 -39.30 -0.29 4.28 16 32 H 0.13 2.72 5.84 -51.93 -0.30 2.42 16 33 H 0.07 0.97 6.61 -51.93 -0.34 0.62 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.08 5.92 -51.93 -0.31 0.77 16 LS Contribution 297.88 15.07 4.49 4.49 Total: -1.00 -28.12 297.88 -6.78 -34.90 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -5.77 Total: 13.18 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -1.22 Total: -4.61 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.30 Total: -50.11 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.67 Total: 14.80 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.12 -6.78 -34.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399134368.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.563 kcal (2) G-P(sol) polarization free energy of solvation -28.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds