Wall clock time and date at job start Mon Mar 30 2020 04:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47475 * 2 1 4 4 C 1.46502 * 119.99611 * 274.03493 * 3 2 1 5 5 C 1.50699 * 109.46776 * 269.99530 * 4 3 2 6 6 H 1.07994 * 120.00383 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99447 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99487 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00319 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47276 * 89.99717 * 9 7 5 11 11 H 1.48503 * 109.47061 * 209.99720 * 9 7 5 12 12 H 1.48497 * 109.46878 * 329.99700 * 9 7 5 13 13 C 1.34774 * 119.99915 * 94.03351 * 3 2 1 14 14 O 1.21280 * 120.00226 * 355.03351 * 13 3 2 15 15 C 1.50702 * 119.99893 * 175.03473 * 13 3 2 16 16 H 1.09001 * 109.47057 * 33.12174 * 15 13 3 17 17 N 1.46898 * 109.47313 * 153.12515 * 15 13 3 18 18 C 1.53004 * 109.46856 * 273.12774 * 15 13 3 19 19 C 1.53785 * 113.61173 * 178.31312 * 18 15 13 20 20 C 1.53779 * 87.08052 * 139.97575 * 19 18 15 21 21 C 1.53783 * 87.17509 * 334.52687 * 20 19 18 22 22 H 1.09004 * 109.46824 * 304.97545 * 1 2 3 23 23 H 1.09001 * 109.47066 * 64.97734 * 1 2 3 24 24 H 1.08999 * 109.47506 * 184.97785 * 1 2 3 25 25 H 1.09007 * 109.47213 * 239.99674 * 2 1 3 26 26 H 1.08999 * 109.47061 * 120.00426 * 2 1 3 27 27 H 1.08995 * 109.47414 * 30.00239 * 4 3 2 28 28 H 1.09003 * 109.46633 * 150.00226 * 4 3 2 29 29 H 0.97005 * 119.99419 * 179.97438 * 8 7 5 30 30 H 1.00899 * 110.99514 * 53.05698 * 17 15 13 31 31 H 1.00893 * 111.00371 * 177.01257 * 17 15 13 32 32 H 1.08995 * 112.90690 * 47.06259 * 18 15 13 33 33 H 1.09005 * 113.60960 * 25.43116 * 19 18 15 34 34 H 1.08991 * 113.61521 * 254.52929 * 19 18 15 35 35 H 1.09004 * 113.61303 * 89.11590 * 20 19 18 36 36 H 1.08997 * 113.61798 * 219.93084 * 20 19 18 37 37 H 1.09003 * 113.61338 * 140.01936 * 21 20 19 38 38 H 1.08997 * 113.61086 * 270.92523 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1784 2.1015 -1.2657 5 6 3.5695 1.8760 -1.7995 6 1 4.2647 1.2577 -1.2511 7 6 3.9547 2.4592 -2.9880 8 7 5.1686 2.2620 -3.4542 9 14 2.7524 3.5292 -3.9362 10 1 2.8851 4.9389 -3.4886 11 1 3.0500 3.4408 -5.3884 12 1 1.3666 3.0585 -3.6853 13 6 2.3205 1.9891 1.1643 14 8 2.1034 1.4263 2.2165 15 6 2.9279 3.3683 1.1588 16 1 2.5381 3.9336 0.3122 17 7 2.5848 4.0595 2.4088 18 6 4.4490 3.2551 1.0395 19 6 5.1654 4.6148 0.9835 20 6 6.2427 3.9959 1.8896 21 6 5.1584 3.0257 2.3876 22 1 -0.3633 0.5891 0.8421 23 1 -0.3633 0.4347 -0.9312 24 1 -0.3634 -1.0237 0.0892 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.4484 1.7348 -1.9872 28 1 2.0214 3.1673 -1.0994 29 1 5.4394 2.6719 -4.2906 30 1 2.8348 3.5010 3.2110 31 1 3.0207 4.9684 2.4508 32 1 4.7630 2.5636 0.2576 33 1 4.6072 5.4222 1.4576 34 1 5.5283 4.8764 -0.0104 35 1 7.0472 3.5069 1.3402 36 1 6.6082 4.6749 2.6599 37 1 5.5159 2.0054 2.5264 38 1 4.5985 3.3995 3.2448 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399134368.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:33 Heat of formation + Delta-G solvation = -34.870076 kcal Electronic energy + Delta-G solvation = -18545.292400 eV Core-core repulsion = 15808.559062 eV Total energy + Delta-G solvation = -2736.733338 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.40734 -39.48648 -37.00568 -34.75893 -34.36810 -32.21403 -29.53510 -28.25252 -26.57734 -25.16529 -24.53426 -23.06917 -20.24255 -19.67544 -18.87977 -18.42519 -17.34245 -16.92049 -16.37384 -16.15754 -15.93334 -15.33383 -14.73983 -14.60794 -14.33170 -14.16200 -13.69794 -13.52600 -13.24915 -13.17451 -13.13883 -12.66330 -12.57109 -12.42736 -12.07663 -11.86095 -11.70902 -11.59425 -11.34733 -11.15529 -10.75581 -10.49305 -9.64902 -9.43193 -8.26576 -6.31761 1.39814 1.42545 1.50410 1.73779 2.25648 2.35740 3.07022 3.53117 3.66992 3.74876 3.83246 3.88156 4.03073 4.25370 4.36651 4.43400 4.47228 4.53230 4.70549 4.73931 4.80342 4.89082 4.91823 4.99396 5.00479 5.02575 5.13233 5.29153 5.32976 5.46611 5.61852 5.72313 6.09137 6.22024 6.58336 6.62685 6.72378 7.26791 7.37123 8.88788 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.016173 B = 0.012070 C = 0.008108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.887171 B = 2319.234334 C = 3452.347728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.214 3.786 5 C -0.526 4.526 6 H 0.035 0.965 7 C 0.026 3.974 8 N -0.938 5.938 9 Si 0.930 3.070 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.243 1.243 13 C 0.521 3.479 14 O -0.586 6.586 15 C 0.094 3.906 16 H 0.098 0.902 17 N -0.825 5.825 18 C -0.140 4.140 19 C -0.127 4.127 20 C -0.127 4.127 21 C -0.138 4.138 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.266 0.734 30 H 0.348 0.652 31 H 0.356 0.644 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 4.326 7.077 9.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 N -0.326 5.326 4 C 0.092 3.908 5 C -0.564 4.564 6 H 0.054 0.946 7 C -0.173 4.173 8 N -0.577 5.577 9 Si 0.754 3.246 10 H -0.187 1.187 11 H -0.213 1.213 12 H -0.166 1.166 13 C 0.310 3.690 14 O -0.468 6.468 15 C -0.021 4.021 16 H 0.116 0.884 17 N -0.361 5.361 18 C -0.161 4.161 19 C -0.165 4.165 20 C -0.165 4.165 21 C -0.176 4.176 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.164 0.836 31 H 0.172 0.828 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.012 4.024 7.209 9.658 hybrid contribution 1.115 0.010 -0.849 1.401 sum -3.898 4.034 6.361 8.481 Atomic orbital electron populations 1.22010 0.94305 1.03010 1.01613 1.21423 0.95488 0.82429 1.02185 1.47994 1.63360 1.14379 1.06916 1.19691 0.96139 0.92925 0.82011 1.21358 0.97475 1.31035 1.06581 0.94625 1.25630 0.96511 0.97286 0.97874 1.70040 1.20134 1.45740 1.21820 0.85969 0.80744 0.80017 0.77913 1.18732 1.21328 1.16622 1.20727 0.76780 0.88506 0.82969 1.90537 1.56480 1.67939 1.31800 1.21107 0.93937 0.91954 0.95087 0.88415 1.58821 1.66803 1.07519 1.02922 1.23282 0.93540 1.00223 0.99059 1.22907 0.97580 0.95809 1.00182 1.22676 0.96002 0.98446 0.99330 1.23078 0.98124 0.99558 0.96824 0.93759 0.92218 0.89562 0.90614 0.91671 0.93801 0.94034 0.92440 0.83597 0.82817 0.90277 0.88030 0.92647 0.91395 0.88920 0.93343 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 10.24 71.98 0.74 -3.75 16 2 C 0.11 3.92 6.14 86.38 0.53 4.45 16 3 N -0.60 -24.58 2.46 -826.15 -2.03 -26.61 16 4 C 0.21 9.23 4.01 85.63 0.34 9.58 16 5 C -0.53 -27.07 8.44 25.60 0.22 -26.86 16 6 H 0.04 2.11 7.34 -2.91 -0.02 2.09 16 7 C 0.03 1.38 5.47 84.66 0.46 1.84 16 8 N -0.94 -54.11 13.96 21.45 0.30 -53.82 16 9 Si 0.93 39.39 27.47 68.60 1.88 41.28 16 10 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.24 -9.39 6.54 99.48 0.65 -8.73 16 13 C 0.52 21.62 6.86 87.66 0.60 22.22 16 14 O -0.59 -26.16 15.72 -3.03 -0.05 -26.21 16 15 C 0.09 3.37 2.71 44.17 0.12 3.49 16 16 H 0.10 3.63 5.92 -2.39 -0.01 3.61 16 17 N -0.83 -24.53 8.59 -171.80 -1.48 -26.00 16 18 C -0.14 -5.04 3.45 -10.17 -0.04 -5.07 16 19 C -0.13 -3.77 7.49 31.12 0.23 -3.54 16 20 C -0.13 -3.44 8.07 31.12 0.25 -3.19 16 21 C -0.14 -4.20 7.38 31.21 0.23 -3.97 16 22 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 25 H 0.08 2.75 8.10 -2.38 -0.02 2.73 16 26 H 0.06 2.45 7.38 -2.39 -0.02 2.44 16 27 H 0.04 1.82 7.13 -2.39 -0.02 1.81 16 28 H 0.04 1.72 5.34 -2.39 -0.01 1.71 16 29 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 30 H 0.35 10.46 6.45 -89.69 -0.58 9.88 16 31 H 0.36 8.42 7.33 -89.70 -0.66 7.76 16 32 H 0.08 3.63 5.84 -2.39 -0.01 3.62 16 33 H 0.10 2.40 6.61 -2.38 -0.02 2.39 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.10 2.51 5.92 -2.39 -0.01 2.50 16 Total: -1.00 -61.87 297.88 2.10 -59.77 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -0.22 Total: 36.40 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 3.69 Total: -4.81 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -3.21 Total: -106.43 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.05 Total: -26.21 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 1.88 Total: 41.28 kcal Total: -61.87 2.10 -59.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399134368.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.898 kcal (2) G-P(sol) polarization free energy of solvation -61.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds