Wall clock time and date at job start Mon Mar 30 2020 03:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00294 * 2 1 4 4 C 1.53005 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46316 * 305.00047 * 4 3 2 6 6 C 1.53001 * 109.46716 * 64.99728 * 4 3 2 7 7 C 1.50692 * 109.46923 * 184.99669 * 4 3 2 8 8 O 1.21282 * 120.00693 * 324.95919 * 7 4 3 9 9 N 1.34786 * 119.99635 * 144.95472 * 7 4 3 10 10 C 1.46501 * 120.00001 * 184.87832 * 9 7 4 11 11 C 1.53003 * 109.46901 * 175.79331 * 10 9 7 12 12 C 1.50696 * 115.55077 * 297.95547 * 11 10 9 13 13 H 1.07994 * 120.00184 * 93.69062 * 12 11 10 14 14 C 1.37880 * 119.99737 * 273.69739 * 12 11 10 15 15 N 1.31509 * 120.00192 * 6.90576 * 14 12 11 16 16 Si 1.86806 * 119.99538 * 186.91156 * 14 12 11 17 17 H 1.48497 * 109.47423 * 90.00011 * 16 14 12 18 18 H 1.48500 * 109.46743 * 209.99475 * 16 14 12 19 19 H 1.48497 * 109.47020 * 329.99233 * 16 14 12 20 20 C 1.53001 * 117.49631 * 152.28768 * 11 10 9 21 21 C 1.53000 * 117.49797 * 83.62885 * 11 10 9 22 22 H 1.08999 * 109.47359 * 60.00081 * 1 2 3 23 23 H 1.08997 * 109.47266 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46807 * 299.99916 * 1 2 3 25 25 H 1.00902 * 110.99772 * 123.95974 * 2 1 3 26 26 H 1.08994 * 109.47446 * 60.00063 * 3 2 1 27 27 H 1.09007 * 109.46908 * 299.99971 * 3 2 1 28 28 H 1.08997 * 109.47135 * 57.16585 * 6 4 3 29 29 H 1.09001 * 109.47317 * 297.15955 * 6 4 3 30 30 H 1.09001 * 109.46541 * 177.16441 * 6 4 3 31 31 H 0.96999 * 120.00048 * 4.88688 * 9 7 4 32 32 H 1.08995 * 109.47036 * 295.79497 * 10 9 7 33 33 H 1.09004 * 109.46588 * 55.79492 * 10 9 7 34 34 H 0.97005 * 119.99805 * 185.03017 * 15 14 12 35 35 H 1.09003 * 117.49747 * 359.97438 * 20 11 10 36 36 H 1.08999 * 117.49905 * 145.01786 * 20 11 10 37 37 H 1.08999 * 117.49765 * 214.97744 * 21 11 10 38 38 H 1.09005 * 117.49577 * 359.97248 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5250 1.3305 -0.0006 5 1 3.8727 0.7314 0.8410 6 6 4.0179 0.7076 -1.3083 7 6 4.0649 2.7320 0.1231 8 8 3.4806 3.6557 -0.4025 9 7 5.1973 2.9589 0.8180 10 6 5.6646 4.3313 1.0291 11 6 6.9019 4.3159 1.9290 12 6 6.6905 3.7644 3.3154 13 1 6.8859 2.7217 3.5173 14 6 6.2475 4.5911 4.3260 15 7 5.8800 5.8241 4.0535 16 14 6.1695 3.9598 6.0824 17 1 7.4607 4.2313 6.7639 18 1 5.0724 4.6492 6.8079 19 1 5.9133 2.4971 6.0717 20 6 7.9059 5.4593 1.7690 21 6 8.2555 4.0570 1.2644 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8305 -0.5262 0.7813 26 1 1.6461 1.8947 0.8899 27 1 1.6460 1.8947 -0.8901 28 1 3.6283 1.2776 -2.1518 29 1 3.6690 -0.3230 -1.3740 30 1 5.1075 0.7245 -1.3306 31 1 5.7029 2.2136 1.1782 32 1 5.9190 4.7801 0.0690 33 1 4.8762 4.9142 1.5053 34 1 5.6381 6.4283 4.7728 35 1 7.6851 6.2222 1.0224 36 1 8.4138 5.8123 2.6665 37 1 8.9933 3.4881 1.8302 38 1 8.2644 3.8972 0.1862 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404168878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:37 Heat of formation + Delta-G solvation = -27.971624 kcal Electronic energy + Delta-G solvation = -17471.056680 eV Core-core repulsion = 14734.622481 eV Total energy + Delta-G solvation = -2736.434199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.36087 -36.93444 -36.16858 -33.30060 -32.51507 -31.98464 -26.86635 -26.53144 -25.35451 -24.03262 -21.84743 -21.15466 -19.61083 -19.05729 -16.85663 -16.15282 -15.82281 -15.23131 -14.75306 -14.42315 -14.39106 -14.12605 -13.65931 -13.09106 -12.93747 -12.67525 -12.30199 -11.95123 -11.78943 -11.67968 -11.56497 -11.10346 -11.01285 -10.88006 -10.83990 -10.56719 -10.28549 -9.67200 -9.20276 -8.97022 -8.53949 -8.50144 -8.29413 -8.06375 -6.11568 -4.19783 3.21414 3.23538 3.31781 3.32352 3.77869 4.32732 4.40018 4.86081 5.13102 5.17194 5.20766 5.28185 5.35935 5.40702 5.66421 5.76328 5.82493 5.84155 5.99905 6.02933 6.17750 6.31651 6.34633 6.46371 6.54114 6.67889 6.86020 6.87569 7.07185 7.25763 7.29610 7.40697 7.47005 7.78270 8.30947 8.32486 8.81472 8.91073 9.47610 10.97058 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.006350 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.885941 B = 4408.408713 C = 5145.278123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.693 5.693 3 C 0.075 3.925 4 C -0.107 4.107 5 H 0.086 0.914 6 C -0.128 4.128 7 C 0.509 3.491 8 O -0.559 6.559 9 N -0.701 5.701 10 C 0.162 3.838 11 C 0.026 3.974 12 C -0.498 4.498 13 H 0.060 0.940 14 C 0.074 3.926 15 N -0.873 5.873 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.148 4.148 21 C -0.210 4.210 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.021 0.979 25 H 0.340 0.660 26 H 0.034 0.966 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.399 0.601 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.261 0.739 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.379 -10.024 -5.936 12.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.324 5.324 3 C -0.054 4.054 4 C -0.129 4.129 5 H 0.104 0.896 6 C -0.186 4.186 7 C 0.294 3.706 8 O -0.438 6.438 9 N -0.349 5.349 10 C 0.039 3.961 11 C 0.025 3.975 12 C -0.536 4.536 13 H 0.078 0.922 14 C -0.131 4.131 15 N -0.509 5.509 16 Si 0.716 3.284 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.186 4.186 21 C -0.248 4.248 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.040 0.960 25 H 0.157 0.843 26 H 0.052 0.948 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.233 0.767 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.891 -9.241 -6.892 12.523 hybrid contribution 0.076 -0.176 2.250 2.258 sum -4.815 -9.417 -4.642 11.550 Atomic orbital electron populations 1.22168 0.87814 1.01586 1.00590 1.60412 1.07721 1.14479 1.49769 1.21792 0.92763 0.88966 1.01896 1.21225 0.96180 0.94634 1.00888 0.89557 1.21591 1.00374 1.01373 0.95268 1.20419 0.81094 0.90371 0.78707 1.90644 1.59609 1.45658 1.47930 1.45987 1.24742 1.10611 1.53543 1.20993 0.97844 0.80990 0.96258 1.19053 0.85056 0.99124 0.94245 1.20342 1.45610 0.95844 0.91774 0.92206 1.24971 0.94066 0.95206 0.98812 1.70017 1.43069 1.05675 1.32146 0.86663 0.77714 0.79042 0.85025 1.20591 1.21291 1.19850 1.22475 1.05246 0.90023 1.00835 1.23040 1.02723 1.01278 0.97735 0.91686 0.91541 0.95991 0.84338 0.94765 0.89807 0.92339 0.90879 0.92797 0.76664 0.94717 0.90942 0.92879 0.91678 0.89824 0.90328 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.70 60.06 0.64 0.92 16 2 N -0.69 -7.76 6.36 -121.13 -0.77 -8.53 16 3 C 0.08 1.04 4.65 -3.82 -0.02 1.02 16 4 C -0.11 -1.51 2.85 -91.77 -0.26 -1.78 16 5 H 0.09 1.08 8.13 -51.93 -0.42 0.66 16 6 C -0.13 -1.59 9.03 37.16 0.34 -1.26 16 7 C 0.51 9.58 6.82 -10.99 -0.07 9.50 16 8 O -0.56 -12.57 16.38 5.56 0.09 -12.48 16 9 N -0.70 -13.65 5.42 -60.29 -0.33 -13.98 16 10 C 0.16 3.70 5.51 -4.04 -0.02 3.68 16 11 C 0.03 0.61 1.42 -155.66 -0.22 0.39 16 12 C -0.50 -12.70 8.57 -34.44 -0.30 -13.00 16 13 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 14 C 0.07 1.94 5.38 -17.82 -0.10 1.85 16 15 N -0.87 -24.22 12.89 55.43 0.71 -23.51 16 16 Si 0.89 20.42 29.55 -169.99 -5.02 15.40 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.15 -3.36 9.39 -26.69 -0.25 -3.61 16 21 C -0.21 -4.34 9.95 -26.69 -0.27 -4.60 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.34 3.36 8.82 -39.29 -0.35 3.01 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.26 8.02 -51.92 -0.42 0.84 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.80 7.83 -51.93 -0.41 0.40 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.40 7.07 8.35 -40.82 -0.34 6.73 16 32 H 0.03 0.78 8.11 -51.93 -0.42 0.36 16 33 H 0.07 1.91 8.14 -51.93 -0.42 1.49 16 34 H 0.26 6.97 8.32 -40.82 -0.34 6.64 16 35 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 37 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 321.16 15.07 4.84 4.84 Total: -1.00 -29.11 321.16 -7.55 -36.66 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.55 Total: 8.49 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.53 Total: -6.89 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.38 Total: -46.01 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.11 -7.55 -36.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404168878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.690 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds