Wall clock time and date at job start Mon Mar 30 2020 03:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00294 * 2 1 4 4 C 1.53005 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46316 * 305.00047 * 4 3 2 6 6 C 1.53001 * 109.46716 * 64.99728 * 4 3 2 7 7 C 1.50692 * 109.46923 * 184.99669 * 4 3 2 8 8 O 1.21282 * 120.00693 * 324.95919 * 7 4 3 9 9 N 1.34786 * 119.99635 * 144.95472 * 7 4 3 10 10 C 1.46501 * 120.00001 * 184.87832 * 9 7 4 11 11 C 1.53003 * 109.46901 * 175.79331 * 10 9 7 12 12 C 1.50696 * 115.55077 * 297.95547 * 11 10 9 13 13 H 1.07994 * 120.00184 * 93.69062 * 12 11 10 14 14 C 1.37880 * 119.99737 * 273.69739 * 12 11 10 15 15 N 1.31509 * 120.00192 * 6.90576 * 14 12 11 16 16 Si 1.86806 * 119.99538 * 186.91156 * 14 12 11 17 17 H 1.48497 * 109.47423 * 90.00011 * 16 14 12 18 18 H 1.48500 * 109.46743 * 209.99475 * 16 14 12 19 19 H 1.48497 * 109.47020 * 329.99233 * 16 14 12 20 20 C 1.53001 * 117.49631 * 152.28768 * 11 10 9 21 21 C 1.53000 * 117.49797 * 83.62885 * 11 10 9 22 22 H 1.08999 * 109.47359 * 60.00081 * 1 2 3 23 23 H 1.08997 * 109.47266 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46807 * 299.99916 * 1 2 3 25 25 H 1.00902 * 110.99772 * 123.95974 * 2 1 3 26 26 H 1.08994 * 109.47446 * 60.00063 * 3 2 1 27 27 H 1.09007 * 109.46908 * 299.99971 * 3 2 1 28 28 H 1.08997 * 109.47135 * 57.16585 * 6 4 3 29 29 H 1.09001 * 109.47317 * 297.15955 * 6 4 3 30 30 H 1.09001 * 109.46541 * 177.16441 * 6 4 3 31 31 H 0.96999 * 120.00048 * 4.88688 * 9 7 4 32 32 H 1.08995 * 109.47036 * 295.79497 * 10 9 7 33 33 H 1.09004 * 109.46588 * 55.79492 * 10 9 7 34 34 H 0.97005 * 119.99805 * 185.03017 * 15 14 12 35 35 H 1.09003 * 117.49747 * 359.97438 * 20 11 10 36 36 H 1.08999 * 117.49905 * 145.01786 * 20 11 10 37 37 H 1.08999 * 117.49765 * 214.97744 * 21 11 10 38 38 H 1.09005 * 117.49577 * 359.97248 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5250 1.3305 -0.0006 5 1 3.8727 0.7314 0.8410 6 6 4.0179 0.7076 -1.3083 7 6 4.0649 2.7320 0.1231 8 8 3.4806 3.6557 -0.4025 9 7 5.1973 2.9589 0.8180 10 6 5.6646 4.3313 1.0291 11 6 6.9019 4.3159 1.9290 12 6 6.6905 3.7644 3.3154 13 1 6.8859 2.7217 3.5173 14 6 6.2475 4.5911 4.3260 15 7 5.8800 5.8241 4.0535 16 14 6.1695 3.9598 6.0824 17 1 7.4607 4.2313 6.7639 18 1 5.0724 4.6492 6.8079 19 1 5.9133 2.4971 6.0717 20 6 7.9059 5.4593 1.7690 21 6 8.2555 4.0570 1.2644 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8305 -0.5262 0.7813 26 1 1.6461 1.8947 0.8899 27 1 1.6460 1.8947 -0.8901 28 1 3.6283 1.2776 -2.1518 29 1 3.6690 -0.3230 -1.3740 30 1 5.1075 0.7245 -1.3306 31 1 5.7029 2.2136 1.1782 32 1 5.9190 4.7801 0.0690 33 1 4.8762 4.9142 1.5053 34 1 5.6381 6.4283 4.7728 35 1 7.6851 6.2222 1.0224 36 1 8.4138 5.8123 2.6665 37 1 8.9933 3.4881 1.8302 38 1 8.2644 3.8972 0.1862 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404168878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:37 Heat of formation + Delta-G solvation = -48.236205 kcal Electronic energy + Delta-G solvation = -17471.935418 eV Core-core repulsion = 14734.622481 eV Total energy + Delta-G solvation = -2737.312937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.88471 -38.60861 -37.36101 -34.96465 -33.99171 -33.59680 -28.31614 -27.78127 -27.25147 -25.09907 -23.17303 -22.82825 -21.35038 -20.63765 -18.42548 -17.83718 -16.97519 -16.65681 -16.60538 -16.00084 -15.63957 -15.54507 -15.09891 -14.57705 -14.31109 -13.89380 -13.68576 -13.47310 -13.25597 -13.02504 -12.96395 -12.75947 -12.61677 -12.38980 -12.10783 -12.04698 -11.90775 -11.49308 -10.85547 -10.78328 -10.45109 -10.05410 -9.82000 -9.46644 -8.11741 -6.24386 1.41862 1.44112 1.51904 1.71006 2.33967 2.43174 3.17775 3.32406 3.52407 3.74042 3.95611 4.11220 4.25638 4.44977 4.51278 4.54365 4.59918 4.65588 4.70838 4.76196 4.77889 4.99474 5.01777 5.02040 5.03534 5.13656 5.26551 5.36910 5.56249 5.60765 5.68931 5.77211 5.90024 6.35652 6.43889 6.77797 6.84495 7.38963 7.45926 8.96797 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.006350 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.885941 B = 4408.408713 C = 5145.278123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.688 5.688 3 C 0.082 3.918 4 C -0.097 4.097 5 H 0.110 0.890 6 C -0.121 4.121 7 C 0.505 3.495 8 O -0.600 6.600 9 N -0.696 5.696 10 C 0.178 3.822 11 C 0.002 3.998 12 C -0.500 4.500 13 H 0.066 0.934 14 C 0.024 3.976 15 N -0.909 5.909 16 Si 0.947 3.053 17 H -0.277 1.277 18 H -0.294 1.294 19 H -0.262 1.262 20 C -0.160 4.160 21 C -0.174 4.174 22 H 0.061 0.939 23 H 0.089 0.911 24 H 0.019 0.981 25 H 0.350 0.650 26 H 0.015 0.985 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.411 0.589 32 H 0.034 0.966 33 H 0.027 0.973 34 H 0.258 0.742 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 -12.663 -6.050 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.319 5.319 3 C -0.048 4.048 4 C -0.118 4.118 5 H 0.128 0.872 6 C -0.179 4.179 7 C 0.292 3.708 8 O -0.482 6.482 9 N -0.345 5.345 10 C 0.053 3.947 11 C 0.002 3.998 12 C -0.538 4.538 13 H 0.084 0.916 14 C -0.177 4.177 15 N -0.547 5.547 16 Si 0.774 3.226 17 H -0.202 1.202 18 H -0.221 1.221 19 H -0.186 1.186 20 C -0.198 4.198 21 C -0.212 4.212 22 H 0.080 0.920 23 H 0.107 0.893 24 H 0.037 0.963 25 H 0.169 0.831 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.247 0.753 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.431 -11.932 -7.000 14.526 hybrid contribution -0.082 0.642 2.246 2.337 sum -4.512 -11.290 -4.754 13.055 Atomic orbital electron populations 1.22248 0.86794 1.02981 1.00320 1.60391 1.08664 1.12546 1.50292 1.21622 0.92609 0.90305 1.00246 1.21223 0.96149 0.91509 1.02955 0.87195 1.21569 1.00854 1.02008 0.93424 1.21304 0.80184 0.91995 0.77271 1.90623 1.60552 1.47578 1.49490 1.45895 1.25315 1.09569 1.53722 1.20565 0.96271 0.82338 0.95520 1.19090 0.86294 1.00293 0.94156 1.20671 1.44366 0.96040 0.92710 0.91634 1.25701 0.94126 0.95399 1.02458 1.70149 1.44711 1.06902 1.32901 0.85718 0.77335 0.78910 0.80685 1.20237 1.22091 1.18587 1.22417 1.05659 0.91224 1.00546 1.23029 1.00276 0.98847 0.99002 0.92036 0.89270 0.96259 0.83139 0.96657 0.91476 0.93618 0.88760 0.91950 0.75346 0.94792 0.95464 0.93308 0.91253 0.91801 0.89378 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.70 127.69 1.37 1.82 16 2 N -0.69 -13.83 6.36 -537.15 -3.42 -17.24 16 3 C 0.08 2.19 4.65 86.31 0.40 2.59 16 4 C -0.10 -2.55 2.85 -11.54 -0.03 -2.59 16 5 H 0.11 2.42 8.13 -2.39 -0.02 2.40 16 6 C -0.12 -2.69 9.03 71.98 0.65 -2.04 16 7 C 0.51 18.80 6.82 87.65 0.60 19.39 16 8 O -0.60 -27.54 16.38 -3.04 -0.05 -27.59 16 9 N -0.70 -26.61 5.42 -463.05 -2.51 -29.12 16 10 C 0.18 8.18 5.51 86.38 0.48 8.66 16 11 C 0.00 0.11 1.42 -52.93 -0.07 0.04 16 12 C -0.50 -25.16 8.57 25.60 0.22 -24.94 16 13 H 0.07 3.15 7.82 -2.91 -0.02 3.13 16 14 C 0.02 1.24 5.38 84.66 0.46 1.70 16 15 N -0.91 -51.54 12.89 21.45 0.28 -51.26 16 16 Si 0.95 41.75 29.55 68.60 2.03 43.77 16 17 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 18 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 C -0.16 -7.26 9.39 30.62 0.29 -6.97 16 21 C -0.17 -6.80 9.95 30.62 0.30 -6.50 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.35 5.88 8.82 -89.69 -0.79 5.09 16 26 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 2.01 8.02 -2.38 -0.02 1.99 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.74 7.83 -2.39 -0.02 1.72 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.41 13.75 8.35 -92.71 -0.77 12.97 16 32 H 0.03 1.54 8.11 -2.39 -0.02 1.52 16 33 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.26 14.13 8.32 -92.70 -0.77 13.36 16 35 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 38 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 Total: -1.00 -63.22 321.16 0.45 -62.77 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.53 Total: 27.51 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 4.65 Total: -8.84 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -5.65 Total: -97.62 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.05 Total: -27.59 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -63.22 0.45 -62.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404168878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.534 kcal (2) G-P(sol) polarization free energy of solvation -63.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds